HEADER LYASE 03-MAY-16 5JOS TITLE CRYSTAL STRUCTURE OF AN ANCESTRAL CYCLOHEXADIENYL DEHYDRATASE, ANCCDT- TITLE 2 3(P188L). COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLOHEXADIENYL DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.51, 4.2.1.91; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDOTS7 KEYWDS LYASE, PHENYLALANINE BIOSYNTHESIS, CYCLOHEXADIENYL DEHYDRATASE, KEYWDS 2 PERIPLASMIC BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.E.CLIFTON,P.D.CARR,C.J.JACKSON REVDAT 2 27-SEP-23 5JOS 1 LINK REVDAT 1 03-MAY-17 5JOS 0 JRNL AUTH B.E.CLIFTON,J.A.KACZMARSKI,P.D.CARR,C.J.JACKSON JRNL TITL TO BE PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1282 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1702 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1928 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.741 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2000 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1881 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2706 ; 2.047 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4346 ; 0.918 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 6.600 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;38.451 ;24.409 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 349 ;15.517 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.118 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2249 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 451 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 965 ; 2.629 ; 2.947 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 964 ; 2.598 ; 2.944 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1205 ; 3.455 ; 4.398 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1206 ; 3.470 ; 4.400 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1035 ; 4.023 ; 3.401 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1033 ; 4.026 ; 3.398 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1500 ; 5.900 ; 4.911 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2263 ; 7.753 ;23.996 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2264 ; 7.751 ;24.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9452 4.8399 -17.6094 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.1386 REMARK 3 T33: 0.0562 T12: 0.0248 REMARK 3 T13: -0.0133 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 3.9966 L22: 3.1120 REMARK 3 L33: 3.4640 L12: -1.6441 REMARK 3 L13: 0.5726 L23: 0.3320 REMARK 3 S TENSOR REMARK 3 S11: 0.1951 S12: 0.6076 S13: 0.0981 REMARK 3 S21: -0.3865 S22: -0.2308 S23: 0.0275 REMARK 3 S31: -0.0339 S32: -0.1209 S33: 0.0357 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7048 -2.9217 12.2805 REMARK 3 T TENSOR REMARK 3 T11: 0.1268 T22: 0.0485 REMARK 3 T33: 0.0473 T12: 0.0029 REMARK 3 T13: -0.0411 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 4.7758 L22: 3.0655 REMARK 3 L33: 2.6313 L12: -0.3406 REMARK 3 L13: 0.1960 L23: -0.3849 REMARK 3 S TENSOR REMARK 3 S11: -0.1675 S12: -0.3141 S13: 0.3267 REMARK 3 S21: 0.4136 S22: 0.0452 S23: -0.0413 REMARK 3 S31: -0.2393 S32: -0.0435 S33: 0.1223 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 206 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): -25.8438 9.6651 -8.0679 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.0905 REMARK 3 T33: 0.1091 T12: 0.0292 REMARK 3 T13: -0.0094 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 3.7100 L22: 4.9234 REMARK 3 L33: 2.2822 L12: -0.8765 REMARK 3 L13: 1.2873 L23: -1.4000 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: -0.0729 S13: 0.2134 REMARK 3 S21: 0.1905 S22: -0.0061 S23: 0.2681 REMARK 3 S31: -0.3361 S32: -0.2804 S33: -0.0299 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JOS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 1.0.7 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25229 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: 3KBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL PROTEIN (18 MG/ML IN 20 MM HEPES REMARK 280 PH 7.5, 50 MM NACL) + 1 UL PRECIPITANT (1.2 M SODIUM CITRATE, 50 REMARK 280 MM TRIS PH 8.0)., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.90500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.18500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.18500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.35750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.18500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.18500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.45250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.18500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.18500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.35750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.18500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.18500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.45250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.90500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 227 CB TRP A 227 CG -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 MET A 231 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 9 63.93 -53.32 REMARK 500 SER A 37 107.55 -161.02 REMARK 500 PRO A 41 -15.27 -49.89 REMARK 500 TYR A 160 -134.45 -100.05 REMARK 500 ASP A 201 -150.58 -84.08 REMARK 500 HIS A 206 -6.79 -142.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 140 GLY A 141 148.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 189 O REMARK 620 2 HIS A 192 O 92.4 REMARK 620 3 LEU A 195 O 101.9 90.7 REMARK 620 4 HOH A 454 O 83.3 89.2 174.8 REMARK 620 5 HOH A 458 O 165.6 101.5 81.9 93.1 REMARK 620 6 HOH A 463 O 79.8 170.9 95.5 85.3 86.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 303 DBREF 5JOS A 1 247 PDB 5JOS 5JOS 1 247 SEQRES 1 A 247 MET ARG GLY SER HIS HIS HIS HIS HIS HIS ILE ALA ALA SEQRES 2 A 247 SER ARG LEU ASP GLU ILE MET GLU ARG GLY THR LEU ARG SEQRES 3 A 247 VAL GLY THR THR GLY ASP TYR LYS PRO PHE SER TYR ARG SEQRES 4 A 247 ASP PRO ASP GLY GLN TYR THR GLY PHE ASP ILE ASP VAL SEQRES 5 A 247 ALA LYS SER LEU ALA LYS SER LEU GLY VAL LYS VAL GLU SEQRES 6 A 247 PHE VAL PRO THR THR TRP PRO THR LEU MET SER ASP LEU SEQRES 7 A 247 GLN ALA ASP LYS PHE ASP ILE ALA MET GLY GLY VAL THR SEQRES 8 A 247 VAL THR PRO GLU ARG GLN LYS LYS ALA ASP PHE SER ASP SEQRES 9 A 247 PRO TYR MET THR PHE GLY LYS THR PRO LEU VAL ARG LYS SEQRES 10 A 247 GLU ASP ALA ASP LYS PHE LYS SER LEU GLU ASP ILE ASN SEQRES 11 A 247 ARG PRO ASP VAL ARG VAL ALA VAL ASN PRO GLY GLY THR SEQRES 12 A 247 ASN GLU LYS PHE ALA ARG GLU HIS LEU LYS LYS ALA LYS SEQRES 13 A 247 ILE THR VAL TYR GLU ASN ASN VAL GLU ILE PHE GLN GLU SEQRES 14 A 247 VAL ALA SER GLY ARG ALA ASP VAL MET ILE THR ASP THR SEQRES 15 A 247 VAL GLU ALA LEU TYR TYR ALA LYS LYS HIS PRO GLY LEU SEQRES 16 A 247 ALA ALA VAL LEU VAL ASP LYS PRO PHE THR HIS SER GLU SEQRES 17 A 247 LYS GLY TYR MET MET PRO LYS GLY ASP GLN GLU PHE LEU SEQRES 18 A 247 ASN TYR VAL ASN GLN TRP LEU ASP GLN MET LYS GLN GLN SEQRES 19 A 247 GLY THR TYR GLU LYS LEU TYR GLU LYS TRP LEU LYS LEU HET NA A 301 1 HET BEZ A 302 9 HET CIT A 303 13 HETNAM NA SODIUM ION HETNAM BEZ BENZOIC ACID HETNAM CIT CITRIC ACID FORMUL 2 NA NA 1+ FORMUL 3 BEZ C7 H6 O2 FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *70(H2 O) HELIX 1 AA1 SER A 14 GLY A 23 1 10 HELIX 2 AA2 GLY A 47 GLY A 61 1 15 HELIX 3 AA3 THR A 70 PRO A 72 5 3 HELIX 4 AA4 THR A 73 ALA A 80 1 8 HELIX 5 AA5 THR A 93 LYS A 98 1 6 HELIX 6 AA6 GLU A 118 ALA A 120 5 3 HELIX 7 AA7 SER A 125 ASN A 130 1 6 HELIX 8 AA8 GLY A 142 LEU A 152 1 11 HELIX 9 AA9 GLU A 165 SER A 172 1 8 HELIX 10 AB1 THR A 182 LYS A 191 1 10 HELIX 11 AB2 ASP A 217 GLN A 234 1 18 HELIX 12 AB3 GLY A 235 LYS A 246 1 12 SHEET 1 AA1 3 LYS A 63 PRO A 68 0 SHEET 2 AA1 3 THR A 24 THR A 29 1 N LEU A 25 O LYS A 63 SHEET 3 AA1 3 ILE A 85 ALA A 86 1 O ILE A 85 N GLY A 28 SHEET 1 AA2 2 TYR A 38 ARG A 39 0 SHEET 2 AA2 2 TYR A 45 THR A 46 -1 O THR A 46 N TYR A 38 SHEET 1 AA3 2 ASP A 101 PHE A 102 0 SHEET 2 AA3 2 MET A 212 MET A 213 -1 O MET A 213 N ASP A 101 SHEET 1 AA4 5 LYS A 156 VAL A 159 0 SHEET 2 AA4 5 ARG A 135 VAL A 138 1 N VAL A 136 O THR A 158 SHEET 3 AA4 5 VAL A 177 ASP A 181 1 O VAL A 177 N ALA A 137 SHEET 4 AA4 5 MET A 107 ARG A 116 -1 N THR A 112 O THR A 180 SHEET 5 AA4 5 LEU A 195 ALA A 197 -1 O ALA A 196 N VAL A 115 SHEET 1 AA5 5 LYS A 156 VAL A 159 0 SHEET 2 AA5 5 ARG A 135 VAL A 138 1 N VAL A 136 O THR A 158 SHEET 3 AA5 5 VAL A 177 ASP A 181 1 O VAL A 177 N ALA A 137 SHEET 4 AA5 5 MET A 107 ARG A 116 -1 N THR A 112 O THR A 180 SHEET 5 AA5 5 THR A 205 LYS A 209 -1 O HIS A 206 N PHE A 109 LINK N HIS A 7 CB HIS A 10 1555 8554 1.25 LINK CA HIS A 7 CA HIS A 10 1555 8554 1.32 LINK CA HIS A 7 CG HIS A 10 1555 8554 1.59 LINK C HIS A 7 CA HIS A 10 1555 8554 1.46 LINK CB HIS A 7 CB HIS A 10 1555 8554 1.51 LINK CB HIS A 7 CG HIS A 10 1555 8554 1.43 LINK CG HIS A 7 CG HIS A 10 1555 8554 1.39 LINK CG HIS A 7 CE1 HIS A 10 1555 8554 1.35 LINK ND1 HIS A 7 ND1 HIS A 10 1555 8554 1.31 LINK CD2 HIS A 7 ND1 HIS A 10 1555 8554 1.35 LINK CD2 HIS A 7 CD2 HIS A 10 1555 8554 1.53 LINK CE1 HIS A 7 CE1 HIS A 10 1555 8554 1.54 LINK CB HIS A 8 CG HIS A 9 1555 8554 1.27 LINK CB HIS A 8 CD2 HIS A 9 1555 8554 1.62 LINK CB HIS A 8 CB HIS A 9 1555 8554 1.60 LINK CG HIS A 8 ND1 HIS A 9 1555 8554 1.39 LINK CG HIS A 8 NE2 HIS A 9 1555 8554 1.49 LINK ND1 HIS A 8 CG HIS A 9 1555 8554 1.39 LINK ND1 HIS A 8 CE1 HIS A 9 1555 8554 1.27 LINK CE1 HIS A 8 ND1 HIS A 9 1555 8554 1.40 LINK NE2 HIS A 8 NE2 HIS A 9 1555 8554 1.18 LINK O ALA A 189 NA NA A 301 1555 1555 2.29 LINK O HIS A 192 NA NA A 301 1555 1555 2.34 LINK O LEU A 195 NA NA A 301 1555 1555 2.53 LINK NA NA A 301 O HOH A 454 1555 4445 2.40 LINK NA NA A 301 O HOH A 458 1555 1555 2.41 LINK NA NA A 301 O HOH A 463 1555 1555 2.33 CISPEP 1 LYS A 34 PRO A 35 0 6.11 CISPEP 2 LYS A 202 PRO A 203 0 0.51 SITE 1 AC1 6 ALA A 189 HIS A 192 LEU A 195 HOH A 454 SITE 2 AC1 6 HOH A 458 HOH A 463 SITE 1 AC2 8 TYR A 33 PHE A 36 ASN A 162 ASN A 163 SITE 2 AC2 8 VAL A 183 LEU A 186 HOH A 445 HOH A 456 SITE 1 AC3 6 ASN A 139 GLY A 142 THR A 143 ASN A 144 SITE 2 AC3 6 HOH A 401 HOH A 414 CRYST1 90.370 90.370 101.810 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011066 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009822 0.00000