HEADER HYDROLASE 04-MAY-16 5JPS TITLE STRUCTURE OF THE ZIKA VIRUS NS3 HELICASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 HELICASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1674-2115; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 STRAIN: MR 766; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZIKA VIRUS, NS3 HELICASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.JIA,J.WANG REVDAT 1 17-MAY-17 5JPS 0 JRNL AUTH Z.JIA,J.WANG JRNL TITL STRUCTURE OF THE ZIKA VIRUS NS3 HELICASE DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 37162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1963 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2474 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3406 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57000 REMARK 3 B22 (A**2) : -1.06000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.653 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3473 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3348 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4695 ; 1.625 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7698 ; 0.922 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.769 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;32.699 ;22.866 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 615 ;17.171 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;19.081 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3867 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 790 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39152 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% TACSIMATE 6.0, 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.51950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 195 REMARK 465 PRO A 196 REMARK 465 GLY A 197 REMARK 465 ALA A 198 REMARK 465 GLY A 199 REMARK 465 THR A 246 REMARK 465 ALA A 247 REMARK 465 VAL A 248 REMARK 465 ASN A 249 REMARK 465 VAL A 250 REMARK 465 THR A 251 REMARK 465 HIS A 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ASP A 335 NH1 ARG A 457 1.84 REMARK 500 O HOH A 706 O HOH A 1058 1.95 REMARK 500 OE1 GLU A 573 O HOH A 701 2.01 REMARK 500 OD2 ASP A 335 NH1 ARG A 457 2.05 REMARK 500 O HOH A 707 O HOH A 1026 2.08 REMARK 500 O HOH A 1033 O HOH A 1074 2.09 REMARK 500 OE1 GLU A 482 O HOH A 702 2.10 REMARK 500 OE2 GLU A 402 O HOH A 703 2.12 REMARK 500 NH2 ARG A 462 O HOH A 704 2.15 REMARK 500 OD2 ASP A 481 O HOH A 705 2.16 REMARK 500 O HOH A 721 O HOH A 1032 2.16 REMARK 500 OE1 GLU A 611 O HOH A 707 2.18 REMARK 500 NE ARG A 275 O HOH A 706 2.18 REMARK 500 OE1 GLU A 342 O HOH A 708 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 897 O HOH A 1055 1556 2.03 REMARK 500 O HOH A 703 O HOH A 992 1554 2.14 REMARK 500 O HOH A 1046 O HOH A 1079 1554 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 298 CD ARG A 298 NE -0.202 REMARK 500 PRO A 327 C ASP A 328 N 0.220 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 218 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 218 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 VAL A 220 CB - CA - C ANGL. DEV. = -11.8 DEGREES REMARK 500 VAL A 220 CG1 - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 ASP A 291 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 298 CG - CD - NE ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG A 298 CD - NE - CZ ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 298 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 298 NE - CZ - NH2 ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG A 428 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 491 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 VAL A 599 CG1 - CB - CG2 ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 617 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 617 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 187 -6.91 85.73 REMARK 500 ARG A 202 -140.44 30.64 REMARK 500 MET A 244 57.99 -97.65 REMARK 500 MET A 414 53.87 -107.05 REMARK 500 LEU A 499 -55.64 -127.81 REMARK 500 ASP A 501 120.61 -34.76 REMARK 500 LYS A 537 -76.43 -92.82 REMARK 500 CYS A 600 25.10 -144.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1098 DISTANCE = 6.76 ANGSTROMS DBREF 5JPS A 176 617 UNP Q32ZE1 POLG_ZIKV 1674 2115 SEQRES 1 A 442 VAL GLU CYS PHE GLU PRO SER MET LEU LYS LYS LYS GLN SEQRES 2 A 442 LEU THR VAL LEU ASP LEU HIS PRO GLY ALA GLY LYS THR SEQRES 3 A 442 ARG ARG VAL LEU PRO GLU ILE VAL ARG GLU ALA ILE LYS SEQRES 4 A 442 LYS ARG LEU ARG THR VAL ILE LEU ALA PRO THR ARG VAL SEQRES 5 A 442 VAL ALA ALA GLU MET GLU GLU ALA LEU ARG GLY LEU PRO SEQRES 6 A 442 VAL ARG TYR MET THR THR ALA VAL ASN VAL THR HIS SER SEQRES 7 A 442 GLY THR GLU ILE VAL ASP LEU MET CYS HIS ALA THR PHE SEQRES 8 A 442 THR SER ARG LEU LEU GLN PRO ILE ARG VAL PRO ASN TYR SEQRES 9 A 442 ASN LEU ASN ILE MET ASP GLU ALA HIS PHE THR ASP PRO SEQRES 10 A 442 SER SER ILE ALA ALA ARG GLY TYR ILE SER THR ARG VAL SEQRES 11 A 442 GLU MET GLY GLU ALA ALA ALA ILE PHE MET THR ALA THR SEQRES 12 A 442 PRO PRO GLY THR ARG ASP ALA PHE PRO ASP SER ASN SER SEQRES 13 A 442 PRO ILE MET ASP THR GLU VAL GLU VAL PRO GLU ARG ALA SEQRES 14 A 442 TRP SER SER GLY PHE ASP TRP VAL THR ASP HIS SER GLY SEQRES 15 A 442 LYS THR VAL TRP PHE VAL PRO SER VAL ARG ASN GLY ASN SEQRES 16 A 442 GLU ILE ALA ALA CYS LEU THR LYS ALA GLY LYS ARG VAL SEQRES 17 A 442 ILE GLN LEU SER ARG LYS THR PHE GLU THR GLU PHE GLN SEQRES 18 A 442 LYS THR LYS ASN GLN GLU TRP ASP PHE VAL ILE THR THR SEQRES 19 A 442 ASP ILE SER GLU MET GLY ALA ASN PHE LYS ALA ASP ARG SEQRES 20 A 442 VAL ILE ASP SER ARG ARG CYS LEU LYS PRO VAL ILE LEU SEQRES 21 A 442 ASP GLY GLU ARG VAL ILE LEU ALA GLY PRO MET PRO VAL SEQRES 22 A 442 THR HIS ALA SER ALA ALA GLN ARG ARG GLY ARG ILE GLY SEQRES 23 A 442 ARG ASN PRO ASN LYS PRO GLY ASP GLU TYR MET TYR GLY SEQRES 24 A 442 GLY GLY CYS ALA GLU THR ASP GLU GLY HIS ALA HIS TRP SEQRES 25 A 442 LEU GLU ALA ARG MET LEU LEU ASP ASN ILE TYR LEU GLN SEQRES 26 A 442 ASP GLY LEU ILE ALA SER LEU TYR ARG PRO GLU ALA ASP SEQRES 27 A 442 LYS VAL ALA ALA ILE GLU GLY GLU PHE LYS LEU ARG THR SEQRES 28 A 442 GLU GLN ARG LYS THR PHE VAL GLU LEU MET LYS ARG GLY SEQRES 29 A 442 ASP LEU PRO VAL TRP LEU ALA TYR GLN VAL ALA SER ALA SEQRES 30 A 442 GLY ILE THR TYR THR ASP ARG ARG TRP CYS PHE ASP GLY SEQRES 31 A 442 THR THR ASN ASN THR ILE MET GLU ASP SER VAL PRO ALA SEQRES 32 A 442 GLU VAL TRP THR LYS TYR GLY GLU LYS ARG VAL LEU LYS SEQRES 33 A 442 PRO ARG TRP MET ASP ALA ARG VAL CYS SER ASP HIS ALA SEQRES 34 A 442 ALA LEU LYS SER PHE LYS GLU PHE ALA ALA GLY LYS ARG FORMUL 2 HOH *398(H2 O) HELIX 1 AA1 GLU A 180 LYS A 185 5 6 HELIX 2 AA2 ARG A 203 LYS A 215 1 13 HELIX 3 AA3 THR A 225 LEU A 236 1 12 HELIX 4 AA4 HIS A 263 GLN A 272 1 10 HELIX 5 AA5 ASP A 291 MET A 307 1 17 HELIX 6 AA6 PHE A 349 ASP A 354 1 6 HELIX 7 AA7 SER A 365 ALA A 379 1 15 HELIX 8 AA8 THR A 390 PHE A 395 1 6 HELIX 9 AA9 GLN A 396 GLN A 401 1 6 HELIX 10 AB1 ASP A 410 MET A 414 5 5 HELIX 11 AB2 THR A 449 GLY A 458 1 10 HELIX 12 AB3 HIS A 484 ASP A 495 1 12 HELIX 13 AB4 TYR A 508 VAL A 515 5 8 HELIX 14 AB5 ARG A 525 LYS A 537 1 13 HELIX 15 AB6 PRO A 542 ALA A 552 1 11 HELIX 16 AB7 ARG A 559 PHE A 563 5 5 HELIX 17 AB8 THR A 566 THR A 570 5 5 HELIX 18 AB9 ARG A 598 CYS A 600 5 3 HELIX 19 AC1 ASP A 602 ALA A 614 1 13 SHEET 1 AA1 6 LEU A 189 LEU A 192 0 SHEET 2 AA1 6 ALA A 311 MET A 315 1 O PHE A 314 N THR A 190 SHEET 3 AA1 6 LEU A 281 ASP A 285 1 N MET A 284 O MET A 315 SHEET 4 AA1 6 THR A 219 ALA A 223 1 N VAL A 220 O ILE A 283 SHEET 5 AA1 6 VAL A 258 CYS A 262 1 O ASP A 259 N THR A 219 SHEET 6 AA1 6 VAL A 241 TYR A 243 1 N ARG A 242 O VAL A 258 SHEET 1 AA2 6 ILE A 333 GLU A 337 0 SHEET 2 AA2 6 ASP A 469 TYR A 473 1 O TYR A 471 N THR A 336 SHEET 3 AA2 6 ARG A 422 ASP A 425 1 N ASP A 425 O MET A 472 SHEET 4 AA2 6 THR A 359 PHE A 362 1 N PHE A 362 O ILE A 424 SHEET 5 AA2 6 PHE A 405 THR A 408 1 O VAL A 406 N TRP A 361 SHEET 6 AA2 6 VAL A 383 LEU A 386 1 N ILE A 384 O ILE A 407 SHEET 1 AA3 3 ARG A 428 LEU A 435 0 SHEET 2 AA3 3 ARG A 439 PRO A 447 -1 O ALA A 443 N LYS A 431 SHEET 3 AA3 3 MET A 595 ASP A 596 1 O MET A 595 N VAL A 440 SHEET 1 AA4 2 MET A 572 GLU A 573 0 SHEET 2 AA4 2 VAL A 576 PRO A 577 -1 O VAL A 576 N GLU A 573 SHEET 1 AA5 2 GLU A 579 TRP A 581 0 SHEET 2 AA5 2 LYS A 587 VAL A 589 -1 O ARG A 588 N VAL A 580 LINK OD1 ASP A 335 NH1 ARG A 457 1555 1555 1.24 CISPEP 1 ASP A 193 LEU A 194 0 14.81 CISPEP 2 GLY A 444 PRO A 445 0 4.61 CRYST1 53.549 69.039 57.151 90.00 91.91 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018674 0.000000 0.000621 0.00000 SCALE2 0.000000 0.014485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017507 0.00000