HEADER SIGNALING PROTEIN 04-MAY-16 5JPV TITLE EFFICIENT TARGETING OF THE ASIALOGLYCOPROTEIN RECEPTOR BY POLYVALENT TITLE 2 DISPLAY OF A COMPACT GALACTOSEAMINE MIMIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASIALOGLYCOPROTEIN RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASGPR 1,C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER H1,HEPATIC COMPND 5 LECTIN H1,HL-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASGR1, CLEC4H1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 7 PPPARG4; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS ASIALOGLYCOPROTEIN RECEPTOR, CARBOHYDRATES, LIVER TARGETING, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LIU REVDAT 3 27-SEP-23 5JPV 1 HETSYN REVDAT 2 29-JUL-20 5JPV 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 FORMUL LINK SITE ATOM REVDAT 1 14-JUN-17 5JPV 0 JRNL AUTH C.A.SANHUEZA,M.M.BAKSH,B.THUMA,M.D.ROY,S.DUTTA,C.PREVILLE, JRNL AUTH 2 B.A.CHRUNYK,K.BEAUMONT,R.DULLEA,M.AMMIRATI,S.LIU,D.GEBHARD, JRNL AUTH 3 J.E.FINLEY,C.T.SALATTO,A.KING-AHMAD,I.STOCK,K.ATKINSON, JRNL AUTH 4 B.REIDICH,W.LIN,R.KUMAR,M.TU,E.MENHAJI-KLOTZ,D.A.PRICE, JRNL AUTH 5 S.LIRAS,M.G.FINN,V.MASCITTI JRNL TITL EFFICIENT LIVER TARGETING BY POLYVALENT DISPLAY OF A COMPACT JRNL TITL 2 LIGAND FOR THE ASIALOGLYCOPROTEIN RECEPTOR. JRNL REF J. AM. CHEM. SOC. V. 139 3528 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28230359 JRNL DOI 10.1021/JACS.6B12964 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 24043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1251 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1736 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2142 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : 1.32000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.74000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.957 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2284 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3132 ; 1.142 ; 1.903 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 5.933 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;34.190 ;23.971 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 308 ;14.613 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.132 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 296 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1854 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1268 ; 0.585 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2034 ; 1.153 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1016 ; 1.631 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1098 ; 2.659 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25588 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DV8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA CACODYLATE, PH=6.8-7.4, 0.1 REMARK 280 -0.2M (NH4)2SO4,14-20% PEG 8000, 2% MPD, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.89250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 GLU A 149 REMARK 465 ARG A 150 REMARK 465 THR A 151 REMARK 465 CYS A 152 REMARK 465 ASP A 281 REMARK 465 LYS A 282 REMARK 465 ALA A 283 REMARK 465 SER A 284 REMARK 465 GLN A 285 REMARK 465 GLU A 286 REMARK 465 PRO A 287 REMARK 465 PRO A 288 REMARK 465 LEU A 289 REMARK 465 LEU A 290 REMARK 465 MET B 146 REMARK 465 GLY B 147 REMARK 465 SER B 148 REMARK 465 GLU B 149 REMARK 465 ARG B 150 REMARK 465 THR B 151 REMARK 465 CYS B 152 REMARK 465 ASP B 281 REMARK 465 LYS B 282 REMARK 465 ALA B 283 REMARK 465 SER B 284 REMARK 465 GLN B 285 REMARK 465 GLU B 286 REMARK 465 PRO B 287 REMARK 465 PRO B 288 REMARK 465 LEU B 289 REMARK 465 LEU B 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 195 OD2 ASP B 185 2655 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 234 46.30 -144.03 REMARK 500 ASN B 156 -3.13 81.59 REMARK 500 ALA B 186 -169.26 -126.46 REMARK 500 ASN B 234 45.22 -150.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 534 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 190 O REMARK 620 2 GLU A 196 OE1 84.9 REMARK 620 3 GLU A 196 OE2 74.6 46.7 REMARK 620 4 GLU A 277 OE1 81.7 93.3 134.2 REMARK 620 5 GLU A 277 OE2 130.0 85.6 127.4 50.1 REMARK 620 6 HOH A 428 O 84.7 122.2 75.8 140.5 139.7 REMARK 620 7 HOH A 448 O 103.1 160.8 152.1 71.0 75.9 76.4 REMARK 620 8 HOH A 493 O 151.5 88.0 80.4 126.4 76.7 76.0 92.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 215 OD1 REMARK 620 2 ASP A 215 OD2 48.0 REMARK 620 3 ASP A 242 OD1 161.7 149.5 REMARK 620 4 GLU A 252 O 88.7 127.7 78.8 REMARK 620 5 ASP A 253 OD1 75.2 113.0 88.0 71.2 REMARK 620 6 HOH A 441 O 97.8 85.2 91.0 71.8 142.5 REMARK 620 7 HOH A 488 O 117.5 69.6 80.3 139.9 141.5 74.7 REMARK 620 8 HOH A 497 O 95.6 78.1 86.9 143.6 75.0 142.4 68.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 239 OE1 REMARK 620 2 ASP A 241 OD1 73.8 REMARK 620 3 GLU A 252 OE2 151.7 78.0 REMARK 620 4 ASN A 264 OD1 66.7 140.5 141.4 REMARK 620 5 ASP A 265 O 131.6 137.3 70.7 74.4 REMARK 620 6 ASP A 265 OD1 77.4 81.3 96.6 89.4 74.4 REMARK 620 7 GAL C 2 O3 122.2 127.6 77.3 77.1 72.9 146.9 REMARK 620 8 GAL C 2 O4 75.8 72.8 97.8 97.5 138.7 146.8 65.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 190 O REMARK 620 2 GLU B 196 OE1 82.5 REMARK 620 3 GLU B 196 OE2 72.3 47.1 REMARK 620 4 GLU B 277 OE1 79.9 90.7 131.1 REMARK 620 5 GLU B 277 OE2 127.9 83.4 126.4 50.4 REMARK 620 6 HOH B 421 O 80.2 125.1 78.0 135.7 145.0 REMARK 620 7 HOH B 485 O 105.4 162.6 149.8 75.9 79.5 72.0 REMARK 620 8 HOH B 505 O 145.4 87.6 76.7 133.5 83.3 78.8 93.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 215 OD1 REMARK 620 2 ASP B 215 OD2 49.2 REMARK 620 3 ASP B 242 OD1 159.6 149.9 REMARK 620 4 GLU B 252 O 91.5 125.6 78.1 REMARK 620 5 ASP B 253 OD1 72.6 115.0 87.6 74.1 REMARK 620 6 HOH B 434 O 102.7 84.0 89.8 68.2 142.0 REMARK 620 7 HOH B 497 O 94.3 82.5 84.9 145.1 74.9 142.6 REMARK 620 8 HOH B 500 O 120.6 71.7 78.3 133.9 143.1 72.6 70.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 239 OE1 REMARK 620 2 ASP B 241 OD1 73.1 REMARK 620 3 GLU B 252 OE2 147.6 75.3 REMARK 620 4 ASN B 264 OD1 70.5 143.5 141.1 REMARK 620 5 ASP B 265 O 130.8 136.0 71.1 73.7 REMARK 620 6 ASP B 265 OD1 75.0 81.1 93.4 92.0 73.6 REMARK 620 7 GAL D 2 O3 127.3 126.5 78.3 76.1 72.9 146.3 REMARK 620 8 GAL D 2 O4 79.1 71.8 97.6 98.5 139.4 146.9 66.7 REMARK 620 N 1 2 3 4 5 6 7 DBREF 5JPV A 147 290 UNP P07306 ASGR1_HUMAN 148 291 DBREF 5JPV B 147 290 UNP P07306 ASGR1_HUMAN 148 291 SEQADV 5JPV MET A 146 UNP P07306 EXPRESSION TAG SEQADV 5JPV MET B 146 UNP P07306 EXPRESSION TAG SEQRES 1 A 145 MET GLY SER GLU ARG THR CYS CYS PRO VAL ASN TRP VAL SEQRES 2 A 145 GLU HIS GLU ARG SER CYS TYR TRP PHE SER ARG SER GLY SEQRES 3 A 145 LYS ALA TRP ALA ASP ALA ASP ASN TYR CYS ARG LEU GLU SEQRES 4 A 145 ASP ALA HIS LEU VAL VAL VAL THR SER TRP GLU GLU GLN SEQRES 5 A 145 LYS PHE VAL GLN HIS HIS ILE GLY PRO VAL ASN THR TRP SEQRES 6 A 145 MET GLY LEU HIS ASP GLN ASN GLY PRO TRP LYS TRP VAL SEQRES 7 A 145 ASP GLY THR ASP TYR GLU THR GLY PHE LYS ASN TRP ARG SEQRES 8 A 145 PRO GLU GLN PRO ASP ASP TRP TYR GLY HIS GLY LEU GLY SEQRES 9 A 145 GLY GLY GLU ASP CYS ALA HIS PHE THR ASP ASP GLY ARG SEQRES 10 A 145 TRP ASN ASP ASP VAL CYS GLN ARG PRO TYR ARG TRP VAL SEQRES 11 A 145 CYS GLU THR GLU LEU ASP LYS ALA SER GLN GLU PRO PRO SEQRES 12 A 145 LEU LEU SEQRES 1 B 145 MET GLY SER GLU ARG THR CYS CYS PRO VAL ASN TRP VAL SEQRES 2 B 145 GLU HIS GLU ARG SER CYS TYR TRP PHE SER ARG SER GLY SEQRES 3 B 145 LYS ALA TRP ALA ASP ALA ASP ASN TYR CYS ARG LEU GLU SEQRES 4 B 145 ASP ALA HIS LEU VAL VAL VAL THR SER TRP GLU GLU GLN SEQRES 5 B 145 LYS PHE VAL GLN HIS HIS ILE GLY PRO VAL ASN THR TRP SEQRES 6 B 145 MET GLY LEU HIS ASP GLN ASN GLY PRO TRP LYS TRP VAL SEQRES 7 B 145 ASP GLY THR ASP TYR GLU THR GLY PHE LYS ASN TRP ARG SEQRES 8 B 145 PRO GLU GLN PRO ASP ASP TRP TYR GLY HIS GLY LEU GLY SEQRES 9 B 145 GLY GLY GLU ASP CYS ALA HIS PHE THR ASP ASP GLY ARG SEQRES 10 B 145 TRP ASN ASP ASP VAL CYS GLN ARG PRO TYR ARG TRP VAL SEQRES 11 B 145 CYS GLU THR GLU LEU ASP LYS ALA SER GLN GLU PRO PRO SEQRES 12 B 145 LEU LEU HET GLC C 1 12 HET GAL C 2 11 HET GLC D 1 12 HET GAL D 2 11 HET CA A 302 1 HET CA A 303 1 HET CA A 304 1 HET CL A 305 1 HET CA B 302 1 HET CA B 303 1 HET CA B 304 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 3 GLC 2(C6 H12 O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 CA 6(CA 2+) FORMUL 8 CL CL 1- FORMUL 12 HOH *276(H2 O) HELIX 1 AA1 ALA A 173 GLU A 184 1 12 HELIX 2 AA2 SER A 193 GLY A 205 1 13 HELIX 3 AA3 ALA B 173 GLU B 184 1 12 HELIX 4 AA4 SER B 193 GLY B 205 1 13 SHEET 1 AA1 5 VAL A 158 HIS A 160 0 SHEET 2 AA1 5 SER A 163 PHE A 167 -1 O TYR A 165 N VAL A 158 SHEET 3 AA1 5 ARG A 273 GLU A 279 -1 O THR A 278 N CYS A 164 SHEET 4 AA1 5 THR A 209 HIS A 214 1 N TRP A 210 O ARG A 273 SHEET 5 AA1 5 LYS A 221 TRP A 222 -1 O LYS A 221 N HIS A 214 SHEET 1 AA2 5 HIS A 187 LEU A 188 0 SHEET 2 AA2 5 ARG A 273 GLU A 279 -1 O GLU A 277 N HIS A 187 SHEET 3 AA2 5 THR A 209 HIS A 214 1 N TRP A 210 O ARG A 273 SHEET 4 AA2 5 CYS A 254 PHE A 257 -1 O ALA A 255 N LEU A 213 SHEET 5 AA2 5 TRP A 263 ASP A 266 -1 O ASP A 266 N CYS A 254 SHEET 1 AA3 5 VAL B 158 HIS B 160 0 SHEET 2 AA3 5 SER B 163 PHE B 167 -1 O TYR B 165 N VAL B 158 SHEET 3 AA3 5 ARG B 273 GLU B 279 -1 O THR B 278 N CYS B 164 SHEET 4 AA3 5 THR B 209 HIS B 214 1 N TRP B 210 O ARG B 273 SHEET 5 AA3 5 LYS B 221 TRP B 222 -1 O LYS B 221 N HIS B 214 SHEET 1 AA4 5 HIS B 187 LEU B 188 0 SHEET 2 AA4 5 ARG B 273 GLU B 279 -1 O GLU B 277 N HIS B 187 SHEET 3 AA4 5 THR B 209 HIS B 214 1 N TRP B 210 O ARG B 273 SHEET 4 AA4 5 CYS B 254 PHE B 257 -1 O ALA B 255 N LEU B 213 SHEET 5 AA4 5 TRP B 263 ASP B 266 -1 O ASP B 266 N CYS B 254 SSBOND 1 CYS A 153 CYS A 164 1555 1555 2.03 SSBOND 2 CYS A 181 CYS A 276 1555 1555 2.06 SSBOND 3 CYS A 254 CYS A 268 1555 1555 2.04 SSBOND 4 CYS B 153 CYS B 164 1555 1555 2.04 SSBOND 5 CYS B 181 CYS B 276 1555 1555 2.06 SSBOND 6 CYS B 254 CYS B 268 1555 1555 2.03 LINK O4 GLC C 1 C1 GAL C 2 1555 1555 1.43 LINK O4 GLC D 1 C1 GAL D 2 1555 1555 1.43 LINK O VAL A 190 CA CA A 304 1555 1555 2.36 LINK OE1 GLU A 196 CA CA A 304 1555 1555 2.33 LINK OE2 GLU A 196 CA CA A 304 1555 1555 3.01 LINK OD1 ASP A 215 CA CA A 302 1555 1555 2.72 LINK OD2 ASP A 215 CA CA A 302 1555 1555 2.62 LINK OE1 GLN A 239 CA CA A 303 1555 1555 2.59 LINK OD1 ASP A 241 CA CA A 303 1555 1555 2.46 LINK OD1 ASP A 242 CA CA A 302 1555 1555 2.43 LINK O GLU A 252 CA CA A 302 1555 1555 2.43 LINK OE2 GLU A 252 CA CA A 303 1555 1555 2.34 LINK OD1 ASP A 253 CA CA A 302 1555 1555 2.59 LINK OD1 ASN A 264 CA CA A 303 1555 1555 2.50 LINK O ASP A 265 CA CA A 303 1555 1555 2.54 LINK OD1 ASP A 265 CA CA A 303 1555 1555 2.44 LINK OE1 GLU A 277 CA CA A 304 1555 1555 2.70 LINK OE2 GLU A 277 CA CA A 304 1555 1555 2.48 LINK CA CA A 302 O HOH A 441 1555 1555 2.48 LINK CA CA A 302 O HOH A 488 1555 1555 2.61 LINK CA CA A 302 O HOH A 497 1555 1555 2.45 LINK CA CA A 303 O3 GAL C 2 1555 1555 2.57 LINK CA CA A 303 O4 GAL C 2 1555 1555 2.51 LINK CA CA A 304 O HOH A 428 1555 1555 2.33 LINK CA CA A 304 O HOH A 448 1555 1555 2.47 LINK CA CA A 304 O HOH A 493 1555 1555 2.38 LINK O VAL B 190 CA CA B 304 1555 1555 2.34 LINK OE1 GLU B 196 CA CA B 304 1555 1555 2.26 LINK OE2 GLU B 196 CA CA B 304 1555 1555 2.98 LINK OD1 ASP B 215 CA CA B 302 1555 1555 2.67 LINK OD2 ASP B 215 CA CA B 302 1555 1555 2.55 LINK OE1 GLN B 239 CA CA B 303 1555 1555 2.56 LINK OD1 ASP B 241 CA CA B 303 1555 1555 2.50 LINK OD1 ASP B 242 CA CA B 302 1555 1555 2.53 LINK O GLU B 252 CA CA B 302 1555 1555 2.48 LINK OE2 GLU B 252 CA CA B 303 1555 1555 2.36 LINK OD1 ASP B 253 CA CA B 302 1555 1555 2.57 LINK OD1 ASN B 264 CA CA B 303 1555 1555 2.45 LINK O ASP B 265 CA CA B 303 1555 1555 2.51 LINK OD1 ASP B 265 CA CA B 303 1555 1555 2.35 LINK OE1 GLU B 277 CA CA B 304 1555 1555 2.71 LINK OE2 GLU B 277 CA CA B 304 1555 1555 2.37 LINK CA CA B 302 O HOH B 434 1555 1555 2.32 LINK CA CA B 302 O HOH B 497 1555 1555 2.39 LINK CA CA B 302 O HOH B 500 1555 1555 2.67 LINK CA CA B 303 O3 GAL D 2 1555 1555 2.49 LINK CA CA B 303 O4 GAL D 2 1555 1555 2.55 LINK CA CA B 304 O HOH B 421 1555 1555 2.40 LINK CA CA B 304 O HOH B 485 1555 1555 2.32 LINK CA CA B 304 O HOH B 505 1555 1555 2.38 CISPEP 1 GLN A 239 PRO A 240 0 -6.58 CISPEP 2 GLN B 239 PRO B 240 0 -3.45 CRYST1 41.100 59.785 68.818 90.00 93.27 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024331 0.000000 0.001390 0.00000 SCALE2 0.000000 0.016727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014555 0.00000