data_5JRF # _entry.id 5JRF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5JRF WWPDB D_1000220798 # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 4XTL _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5JRF _pdbx_database_status.recvd_initial_deposition_date 2016-05-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Melnikov, I.' 1 'Polovinkin, V.' 2 'Kovalev, K.' 3 'Shevchenko, V.' 4 'Gushchin, I.' 5 'Popov, A.' 6 'Gordeliy, V.' 7 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 3 _citation.language ? _citation.page_first e1602952 _citation.page_last e1602952 _citation.title 'Fast iodide-SAD phasing for high-throughput membrane protein structure determination.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.1602952 _citation.pdbx_database_id_PubMed 28508075 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Melnikov, I.' 1 primary 'Polovinkin, V.' 2 primary 'Kovalev, K.' 3 primary 'Gushchin, I.' 4 primary 'Shevtsov, M.' 5 primary 'Shevchenko, V.' 6 primary 'Mishin, A.' 7 primary 'Alekseev, A.' 8 primary 'Rodriguez-Valera, F.' 9 primary 'Borshchevskiy, V.' 10 primary 'Cherezov, V.' 11 primary 'Leonard, G.A.' 12 primary 'Gordeliy, V.' 13 primary 'Popov, A.' 14 # _cell.entry_id 5JRF _cell.length_a 40.506 _cell.length_b 83.749 _cell.length_c 234.102 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JRF _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sodium pumping rhodopsin' 32879.008 1 ? ? ? ? 2 non-polymer syn EICOSANE 282.547 8 ? ? ? ? 3 non-polymer syn 'IODIDE ION' 126.904 20 ? ? ? ? 4 water nat water 18.015 49 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MTQELGNANFENFIGATEGFSEIAYQFTSHILTLGYAVMLAGLLYFILTIKNVDKKFQMSNILSAVVMVSAFLLLYAQAQ NWTSSFTFNEEVGRYFLDPSGDLFNNGYRYLNWLIDVPMLLFQILFVVSLTTSKFSSVRNQFWFSGAMMIITGYIGQFYE VSNLTAFLVWGAISSAFFFHILWVMKKVINEGKEGISPAGQKILSNIWILFLISWTLYPGAYLMPYLTGVDGFLYSEDGV MARQLVYTIADVSS(LYR)VIYGVLLGNLAITLSKNKELVEANSLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MTQELGNANFENFIGATEGFSEIAYQFTSHILTLGYAVMLAGLLYFILTIKNVDKKFQMSNILSAVVMVSAFLLLYAQAQ NWTSSFTFNEEVGRYFLDPSGDLFNNGYRYLNWLIDVPMLLFQILFVVSLTTSKFSSVRNQFWFSGAMMIITGYIGQFYE VSNLTAFLVWGAISSAFFFHILWVMKKVINEGKEGISPAGQKILSNIWILFLISWTLYPGAYLMPYLTGVDGFLYSEDGV MARQLVYTIADVSSKVIYGVLLGNLAITLSKNKELVEANSLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 GLN n 1 4 GLU n 1 5 LEU n 1 6 GLY n 1 7 ASN n 1 8 ALA n 1 9 ASN n 1 10 PHE n 1 11 GLU n 1 12 ASN n 1 13 PHE n 1 14 ILE n 1 15 GLY n 1 16 ALA n 1 17 THR n 1 18 GLU n 1 19 GLY n 1 20 PHE n 1 21 SER n 1 22 GLU n 1 23 ILE n 1 24 ALA n 1 25 TYR n 1 26 GLN n 1 27 PHE n 1 28 THR n 1 29 SER n 1 30 HIS n 1 31 ILE n 1 32 LEU n 1 33 THR n 1 34 LEU n 1 35 GLY n 1 36 TYR n 1 37 ALA n 1 38 VAL n 1 39 MET n 1 40 LEU n 1 41 ALA n 1 42 GLY n 1 43 LEU n 1 44 LEU n 1 45 TYR n 1 46 PHE n 1 47 ILE n 1 48 LEU n 1 49 THR n 1 50 ILE n 1 51 LYS n 1 52 ASN n 1 53 VAL n 1 54 ASP n 1 55 LYS n 1 56 LYS n 1 57 PHE n 1 58 GLN n 1 59 MET n 1 60 SER n 1 61 ASN n 1 62 ILE n 1 63 LEU n 1 64 SER n 1 65 ALA n 1 66 VAL n 1 67 VAL n 1 68 MET n 1 69 VAL n 1 70 SER n 1 71 ALA n 1 72 PHE n 1 73 LEU n 1 74 LEU n 1 75 LEU n 1 76 TYR n 1 77 ALA n 1 78 GLN n 1 79 ALA n 1 80 GLN n 1 81 ASN n 1 82 TRP n 1 83 THR n 1 84 SER n 1 85 SER n 1 86 PHE n 1 87 THR n 1 88 PHE n 1 89 ASN n 1 90 GLU n 1 91 GLU n 1 92 VAL n 1 93 GLY n 1 94 ARG n 1 95 TYR n 1 96 PHE n 1 97 LEU n 1 98 ASP n 1 99 PRO n 1 100 SER n 1 101 GLY n 1 102 ASP n 1 103 LEU n 1 104 PHE n 1 105 ASN n 1 106 ASN n 1 107 GLY n 1 108 TYR n 1 109 ARG n 1 110 TYR n 1 111 LEU n 1 112 ASN n 1 113 TRP n 1 114 LEU n 1 115 ILE n 1 116 ASP n 1 117 VAL n 1 118 PRO n 1 119 MET n 1 120 LEU n 1 121 LEU n 1 122 PHE n 1 123 GLN n 1 124 ILE n 1 125 LEU n 1 126 PHE n 1 127 VAL n 1 128 VAL n 1 129 SER n 1 130 LEU n 1 131 THR n 1 132 THR n 1 133 SER n 1 134 LYS n 1 135 PHE n 1 136 SER n 1 137 SER n 1 138 VAL n 1 139 ARG n 1 140 ASN n 1 141 GLN n 1 142 PHE n 1 143 TRP n 1 144 PHE n 1 145 SER n 1 146 GLY n 1 147 ALA n 1 148 MET n 1 149 MET n 1 150 ILE n 1 151 ILE n 1 152 THR n 1 153 GLY n 1 154 TYR n 1 155 ILE n 1 156 GLY n 1 157 GLN n 1 158 PHE n 1 159 TYR n 1 160 GLU n 1 161 VAL n 1 162 SER n 1 163 ASN n 1 164 LEU n 1 165 THR n 1 166 ALA n 1 167 PHE n 1 168 LEU n 1 169 VAL n 1 170 TRP n 1 171 GLY n 1 172 ALA n 1 173 ILE n 1 174 SER n 1 175 SER n 1 176 ALA n 1 177 PHE n 1 178 PHE n 1 179 PHE n 1 180 HIS n 1 181 ILE n 1 182 LEU n 1 183 TRP n 1 184 VAL n 1 185 MET n 1 186 LYS n 1 187 LYS n 1 188 VAL n 1 189 ILE n 1 190 ASN n 1 191 GLU n 1 192 GLY n 1 193 LYS n 1 194 GLU n 1 195 GLY n 1 196 ILE n 1 197 SER n 1 198 PRO n 1 199 ALA n 1 200 GLY n 1 201 GLN n 1 202 LYS n 1 203 ILE n 1 204 LEU n 1 205 SER n 1 206 ASN n 1 207 ILE n 1 208 TRP n 1 209 ILE n 1 210 LEU n 1 211 PHE n 1 212 LEU n 1 213 ILE n 1 214 SER n 1 215 TRP n 1 216 THR n 1 217 LEU n 1 218 TYR n 1 219 PRO n 1 220 GLY n 1 221 ALA n 1 222 TYR n 1 223 LEU n 1 224 MET n 1 225 PRO n 1 226 TYR n 1 227 LEU n 1 228 THR n 1 229 GLY n 1 230 VAL n 1 231 ASP n 1 232 GLY n 1 233 PHE n 1 234 LEU n 1 235 TYR n 1 236 SER n 1 237 GLU n 1 238 ASP n 1 239 GLY n 1 240 VAL n 1 241 MET n 1 242 ALA n 1 243 ARG n 1 244 GLN n 1 245 LEU n 1 246 VAL n 1 247 TYR n 1 248 THR n 1 249 ILE n 1 250 ALA n 1 251 ASP n 1 252 VAL n 1 253 SER n 1 254 SER n 1 255 LYR n 1 256 VAL n 1 257 ILE n 1 258 TYR n 1 259 GLY n 1 260 VAL n 1 261 LEU n 1 262 LEU n 1 263 GLY n 1 264 ASN n 1 265 LEU n 1 266 ALA n 1 267 ILE n 1 268 THR n 1 269 LEU n 1 270 SER n 1 271 LYS n 1 272 ASN n 1 273 LYS n 1 274 GLU n 1 275 LEU n 1 276 VAL n 1 277 GLU n 1 278 ALA n 1 279 ASN n 1 280 SER n 1 281 LEU n 1 282 GLU n 1 283 HIS n 1 284 HIS n 1 285 HIS n 1 286 HIS n 1 287 HIS n 1 288 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 288 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NaR _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Dokdonia eikasta' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 308116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code N0DKS8_9FLAO _struct_ref.pdbx_db_accession N0DKS8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTQELGNANFENFIGATEGFSEIAYQFTSHILTLGYAVMLAGLLYFILTIKNVDKKFQMSNILSAVVMVSAFLLLYAQAQ NWTSSFTFNEEVGRYFLDPSGDLFNNGYRYLNWLIDVPMLLFQILFVVSLTTSKFSSVRNQFWFSGAMMIITGYIGQFYE VSNLTAFLVWGAISSAFFFHILWVMKKVINEGKEGISPAGQKILSNIWILFLISWTLYPGAYLMPYLTGVDGFLYSEDGV MARQLVYTIADVSSKVIYGVLLGNLAITLSKNKELVEANS ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5JRF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 280 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession N0DKS8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 280 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 280 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5JRF LEU A 281 ? UNP N0DKS8 ? ? 'expression tag' 281 1 1 5JRF GLU A 282 ? UNP N0DKS8 ? ? 'expression tag' 282 2 1 5JRF HIS A 283 ? UNP N0DKS8 ? ? 'expression tag' 283 3 1 5JRF HIS A 284 ? UNP N0DKS8 ? ? 'expression tag' 284 4 1 5JRF HIS A 285 ? UNP N0DKS8 ? ? 'expression tag' 285 5 1 5JRF HIS A 286 ? UNP N0DKS8 ? ? 'expression tag' 286 6 1 5JRF HIS A 287 ? UNP N0DKS8 ? ? 'expression tag' 287 7 1 5JRF HIS A 288 ? UNP N0DKS8 ? ? 'expression tag' 288 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LFA non-polymer . EICOSANE 'LIPID FRAGMENT' 'C20 H42' 282.547 LYR 'L-peptide linking' n 'N~6~-[(2Z,4E,6E,8E)-3,7-DIMETHYL-9-(2,6,6-TRIMETHYLCYCLOHEX-1-EN-1-YL)NONA-2,4,6,8-TETRAENYL]LYSINE' ? 'C26 H42 N2 O2' 414.624 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5JRF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.31 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'in meso lipidic cubic phase crystallization' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-11-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.85 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.85 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5JRF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.35 _reflns.d_resolution_low 60 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 26628 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.73 _reflns.pdbx_Rmerge_I_obs 0.126 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.25 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.5 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.54 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 95.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.971 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.50 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5JRF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13612 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 117.05 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.88 _refine.ls_R_factor_obs 0.19180 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18978 _refine.ls_R_factor_R_free 0.22609 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 720 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.917 _refine.correlation_coeff_Fo_to_Fc_free 0.833 _refine.B_iso_mean 38.610 _refine.aniso_B[1][1] 0.16 _refine.aniso_B[2][2] -0.02 _refine.aniso_B[3][3] -0.14 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.339 _refine.pdbx_overall_ESU_R_Free 0.234 _refine.overall_SU_ML 0.158 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.143 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 2122 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 89 _refine_hist.number_atoms_solvent 49 _refine_hist.number_atoms_total 2260 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 117.05 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.020 ? 2242 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 2189 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.749 1.967 ? 3022 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.065 3.000 ? 4986 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.466 5.000 ? 267 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.965 23.678 ? 87 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.469 15.000 ? 329 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 27.203 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.101 0.200 ? 335 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 2470 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 558 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.987 3.734 ? 1071 'X-RAY DIFFRACTION' ? r_mcbond_other 2.971 3.732 ? 1070 'X-RAY DIFFRACTION' ? r_mcangle_it 4.329 5.598 ? 1337 'X-RAY DIFFRACTION' ? r_mcangle_other 4.328 5.600 ? 1338 'X-RAY DIFFRACTION' ? r_scbond_it 3.732 4.182 ? 1171 'X-RAY DIFFRACTION' ? r_scbond_other 3.730 4.185 ? 1172 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 5.739 6.094 ? 1686 'X-RAY DIFFRACTION' ? r_long_range_B_refined 7.099 43.999 ? 2658 'X-RAY DIFFRACTION' ? r_long_range_B_other 7.094 43.998 ? 2657 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.number_reflns_R_work 989 _refine_ls_shell.R_factor_R_work 0.228 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.295 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5JRF _struct.title 'Crystal structure of the light-driven sodium pump KR2 bound with iodide ions' _struct.pdbx_descriptor 'Sodium pumping rhodopsin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5JRF _struct_keywords.text 'membrane protein, sodium pump, iodide, TRANSPORT PROTEIN' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 3 ? U N N 3 ? V N N 3 ? W N N 3 ? X N N 3 ? Y N N 3 ? Z N N 3 ? AA N N 3 ? BA N N 3 ? CA N N 3 ? DA N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 9 ? THR A 17 ? ASN A 9 THR A 17 1 ? 9 HELX_P HELX_P2 AA2 SER A 21 ? THR A 49 ? SER A 21 THR A 49 1 ? 29 HELX_P HELX_P3 AA3 ILE A 50 ? VAL A 53 ? ILE A 50 VAL A 53 5 ? 4 HELX_P HELX_P4 AA4 ASP A 54 ? LYS A 56 ? ASP A 54 LYS A 56 5 ? 3 HELX_P HELX_P5 AA5 PHE A 57 ? SER A 85 ? PHE A 57 SER A 85 1 ? 29 HELX_P HELX_P6 AA6 ASN A 106 ? ILE A 124 ? ASN A 106 ILE A 124 1 ? 19 HELX_P HELX_P7 AA7 LEU A 125 ? VAL A 127 ? LEU A 125 VAL A 127 5 ? 3 HELX_P HELX_P8 AA8 LYS A 134 ? TYR A 159 ? LYS A 134 TYR A 159 1 ? 26 HELX_P HELX_P9 AA9 ASN A 163 ? GLU A 194 ? ASN A 163 GLU A 194 1 ? 32 HELX_P HELX_P10 AB1 SER A 197 ? MET A 224 ? SER A 197 MET A 224 1 ? 28 HELX_P HELX_P11 AB2 PRO A 225 ? LEU A 227 ? PRO A 225 LEU A 227 5 ? 3 HELX_P HELX_P12 AB3 SER A 236 ? LYR A 255 ? SER A 236 LYR A 255 1 ? 20 HELX_P HELX_P13 AB4 LYR A 255 ? SER A 270 ? LYR A 255 SER A 270 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A SER 254 C ? ? ? 1_555 A LYR 255 N ? ? A SER 254 A LYR 255 1_555 ? ? ? ? ? ? ? 1.320 ? covale2 covale both ? A LYR 255 C ? ? ? 1_555 A VAL 256 N ? ? A LYR 255 A VAL 256 1_555 ? ? ? ? ? ? ? 1.312 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 86 ? ASN A 89 ? PHE A 86 ASN A 89 AA1 2 ARG A 94 ? LEU A 97 ? ARG A 94 LEU A 97 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id THR _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 87 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id THR _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 87 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id PHE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 96 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 96 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A LFA 302 ? 2 'binding site for residue LFA A 302' AC2 Software A LFA 303 ? 1 'binding site for residue LFA A 303' AC3 Software A LFA 306 ? 2 'binding site for residue LFA A 306' AC4 Software A LFA 308 ? 2 'binding site for residue LFA A 308' AC5 Software A IOD 309 ? 1 'binding site for residue IOD A 309' AC6 Software A IOD 310 ? 1 'binding site for residue IOD A 310' AC7 Software A IOD 311 ? 2 'binding site for residue IOD A 311' AC8 Software A IOD 312 ? 1 'binding site for residue IOD A 312' AC9 Software A IOD 314 ? 1 'binding site for residue IOD A 314' AD1 Software A IOD 315 ? 1 'binding site for residue IOD A 315' AD2 Software A IOD 316 ? 2 'binding site for residue IOD A 316' AD3 Software A IOD 317 ? 1 'binding site for residue IOD A 317' AD4 Software A IOD 318 ? 1 'binding site for residue IOD A 318' AD5 Software A IOD 319 ? 1 'binding site for residue IOD A 319' AD6 Software A IOD 320 ? 2 'binding site for residue IOD A 320' AD7 Software A IOD 322 ? 2 'binding site for residue IOD A 322' AD8 Software A IOD 323 ? 2 'binding site for residue IOD A 323' AD9 Software A IOD 324 ? 1 'binding site for residue IOD A 324' AE1 Software A IOD 326 ? 1 'binding site for residue IOD A 326' AE2 Software A IOD 327 ? 3 'binding site for residue IOD A 327' AE3 Software A IOD 328 ? 1 'binding site for residue IOD A 328' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 TYR A 76 ? TYR A 76 . ? 1_555 ? 2 AC1 2 TYR A 76 ? TYR A 76 . ? 2_665 ? 3 AC2 1 ASN A 105 ? ASN A 105 . ? 1_555 ? 4 AC3 2 ASN A 163 ? ASN A 163 . ? 1_555 ? 5 AC3 2 ILE A 173 ? ILE A 173 . ? 1_555 ? 6 AC4 2 HIS A 180 ? HIS A 180 . ? 1_555 ? 7 AC4 2 TRP A 183 ? TRP A 183 . ? 1_555 ? 8 AC5 1 TYR A 247 ? TYR A 247 . ? 1_555 ? 9 AC6 1 LYS A 134 ? LYS A 134 . ? 8_455 ? 10 AC7 2 PHE A 122 ? PHE A 122 . ? 1_555 ? 11 AC7 2 HOH DA . ? HOH A 448 . ? 1_555 ? 12 AC8 1 HIS A 30 ? HIS A 30 . ? 1_555 ? 13 AC9 1 SER A 162 ? SER A 162 . ? 1_555 ? 14 AD1 1 SER A 136 ? SER A 136 . ? 1_555 ? 15 AD2 2 SER A 197 ? SER A 197 . ? 1_555 ? 16 AD2 2 LEU A 269 ? LEU A 269 . ? 1_555 ? 17 AD3 1 GLN A 141 ? GLN A 141 . ? 1_555 ? 18 AD4 1 TRP A 208 ? TRP A 208 . ? 1_555 ? 19 AD5 1 LYS A 193 ? LYS A 193 . ? 1_555 ? 20 AD6 2 ASN A 206 ? ASN A 206 . ? 1_555 ? 21 AD6 2 HOH DA . ? HOH A 433 . ? 1_555 ? 22 AD7 2 IOD BA . ? IOD A 327 . ? 8_455 ? 23 AD7 2 HOH DA . ? HOH A 427 . ? 1_555 ? 24 AD8 2 GLU A 237 ? GLU A 237 . ? 1_555 ? 25 AD8 2 HOH DA . ? HOH A 441 . ? 1_555 ? 26 AD9 1 LYS A 56 ? LYS A 56 . ? 1_555 ? 27 AE1 1 LYS A 55 ? LYS A 55 . ? 1_555 ? 28 AE2 3 LEU A 130 ? LEU A 130 . ? 1_555 ? 29 AE2 3 IOD W . ? IOD A 322 . ? 8_555 ? 30 AE2 3 HOH DA . ? HOH A 410 . ? 1_555 ? 31 AE3 1 ASN A 140 ? ASN A 140 . ? 1_555 ? # _atom_sites.entry_id 5JRF _atom_sites.fract_transf_matrix[1][1] 0.024688 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011940 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004272 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 HIS 30 30 30 HIS HIS A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 MET 39 39 39 MET MET A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 TRP 82 82 82 TRP TRP A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 TRP 113 113 113 TRP TRP A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 MET 119 119 119 MET MET A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 PHE 126 126 126 PHE PHE A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 TRP 143 143 143 TRP TRP A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 MET 148 148 148 MET MET A . n A 1 149 MET 149 149 149 MET MET A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 TYR 154 154 154 TYR TYR A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 GLN 157 157 157 GLN GLN A . n A 1 158 PHE 158 158 158 PHE PHE A . n A 1 159 TYR 159 159 159 TYR TYR A . n A 1 160 GLU 160 160 160 GLU GLU A . n A 1 161 VAL 161 161 161 VAL VAL A . n A 1 162 SER 162 162 162 SER SER A . n A 1 163 ASN 163 163 163 ASN ASN A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 PHE 167 167 167 PHE PHE A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 VAL 169 169 169 VAL VAL A . n A 1 170 TRP 170 170 170 TRP TRP A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 SER 174 174 174 SER SER A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 ALA 176 176 176 ALA ALA A . n A 1 177 PHE 177 177 177 PHE PHE A . n A 1 178 PHE 178 178 178 PHE PHE A . n A 1 179 PHE 179 179 179 PHE PHE A . n A 1 180 HIS 180 180 180 HIS HIS A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 TRP 183 183 183 TRP TRP A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 MET 185 185 185 MET MET A . n A 1 186 LYS 186 186 186 LYS LYS A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 VAL 188 188 188 VAL VAL A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 GLU 191 191 191 GLU GLU A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 GLU 194 194 194 GLU GLU A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 ALA 199 199 199 ALA ALA A . n A 1 200 GLY 200 200 200 GLY GLY A . n A 1 201 GLN 201 201 201 GLN GLN A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 ILE 203 203 203 ILE ILE A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 SER 205 205 205 SER SER A . n A 1 206 ASN 206 206 206 ASN ASN A . n A 1 207 ILE 207 207 207 ILE ILE A . n A 1 208 TRP 208 208 208 TRP TRP A . n A 1 209 ILE 209 209 209 ILE ILE A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 PHE 211 211 211 PHE PHE A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 SER 214 214 214 SER SER A . n A 1 215 TRP 215 215 215 TRP TRP A . n A 1 216 THR 216 216 216 THR THR A . n A 1 217 LEU 217 217 217 LEU LEU A . n A 1 218 TYR 218 218 218 TYR TYR A . n A 1 219 PRO 219 219 219 PRO PRO A . n A 1 220 GLY 220 220 220 GLY GLY A . n A 1 221 ALA 221 221 221 ALA ALA A . n A 1 222 TYR 222 222 222 TYR TYR A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 MET 224 224 224 MET MET A . n A 1 225 PRO 225 225 225 PRO PRO A . n A 1 226 TYR 226 226 226 TYR TYR A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 THR 228 228 228 THR THR A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 VAL 230 230 230 VAL VAL A . n A 1 231 ASP 231 231 231 ASP ASP A . n A 1 232 GLY 232 232 232 GLY GLY A . n A 1 233 PHE 233 233 233 PHE PHE A . n A 1 234 LEU 234 234 234 LEU LEU A . n A 1 235 TYR 235 235 235 TYR TYR A . n A 1 236 SER 236 236 236 SER SER A . n A 1 237 GLU 237 237 237 GLU GLU A . n A 1 238 ASP 238 238 238 ASP ASP A . n A 1 239 GLY 239 239 239 GLY GLY A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 MET 241 241 241 MET MET A . n A 1 242 ALA 242 242 242 ALA ALA A . n A 1 243 ARG 243 243 243 ARG ARG A . n A 1 244 GLN 244 244 244 GLN GLN A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 VAL 246 246 246 VAL VAL A . n A 1 247 TYR 247 247 247 TYR TYR A . n A 1 248 THR 248 248 248 THR THR A . n A 1 249 ILE 249 249 249 ILE ILE A . n A 1 250 ALA 250 250 250 ALA ALA A . n A 1 251 ASP 251 251 251 ASP ASP A . n A 1 252 VAL 252 252 252 VAL VAL A . n A 1 253 SER 253 253 253 SER SER A . n A 1 254 SER 254 254 254 SER SER A . n A 1 255 LYR 255 255 255 LYR LYR A . n A 1 256 VAL 256 256 256 VAL VAL A . n A 1 257 ILE 257 257 257 ILE ILE A . n A 1 258 TYR 258 258 258 TYR TYR A . n A 1 259 GLY 259 259 259 GLY GLY A . n A 1 260 VAL 260 260 260 VAL VAL A . n A 1 261 LEU 261 261 261 LEU LEU A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 GLY 263 263 263 GLY GLY A . n A 1 264 ASN 264 264 264 ASN ASN A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 ALA 266 266 266 ALA ALA A . n A 1 267 ILE 267 267 267 ILE ILE A . n A 1 268 THR 268 268 268 THR THR A . n A 1 269 LEU 269 269 269 LEU LEU A . n A 1 270 SER 270 270 270 SER SER A . n A 1 271 LYS 271 271 ? ? ? A . n A 1 272 ASN 272 272 ? ? ? A . n A 1 273 LYS 273 273 ? ? ? A . n A 1 274 GLU 274 274 ? ? ? A . n A 1 275 LEU 275 275 ? ? ? A . n A 1 276 VAL 276 276 ? ? ? A . n A 1 277 GLU 277 277 ? ? ? A . n A 1 278 ALA 278 278 ? ? ? A . n A 1 279 ASN 279 279 ? ? ? A . n A 1 280 SER 280 280 ? ? ? A . n A 1 281 LEU 281 281 ? ? ? A . n A 1 282 GLU 282 282 ? ? ? A . n A 1 283 HIS 283 283 ? ? ? A . n A 1 284 HIS 284 284 ? ? ? A . n A 1 285 HIS 285 285 ? ? ? A . n A 1 286 HIS 286 286 ? ? ? A . n A 1 287 HIS 287 287 ? ? ? A . n A 1 288 HIS 288 288 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA 1 301 1 LFA LFA A . C 2 LFA 1 302 2 LFA LFA A . D 2 LFA 1 303 3 LFA LFA A . E 2 LFA 1 304 4 LFA LFA A . F 2 LFA 1 305 5 LFA LFA A . G 2 LFA 1 306 8 LFA LFA A . H 2 LFA 1 307 9 LFA LFA A . I 2 LFA 1 308 11 LFA LFA A . J 3 IOD 1 309 1 IOD IOD A . K 3 IOD 1 310 2 IOD IOD A . L 3 IOD 1 311 3 IOD IOD A . M 3 IOD 1 312 4 IOD IOD A . N 3 IOD 1 313 5 IOD IOD A . O 3 IOD 1 314 6 IOD IOD A . P 3 IOD 1 315 7 IOD IOD A . Q 3 IOD 1 316 8 IOD IOD A . R 3 IOD 1 317 9 IOD IOD A . S 3 IOD 1 318 10 IOD IOD A . T 3 IOD 1 319 11 IOD IOD A . U 3 IOD 1 320 12 IOD IOD A . V 3 IOD 1 321 13 IOD IOD A . W 3 IOD 1 322 14 IOD IOD A . X 3 IOD 1 323 15 IOD IOD A . Y 3 IOD 1 324 16 IOD IOD A . Z 3 IOD 1 325 17 IOD IOD A . AA 3 IOD 1 326 18 IOD IOD A . BA 3 IOD 1 327 19 IOD IOD A . CA 3 IOD 1 328 20 IOD IOD A . DA 4 HOH 1 401 9 HOH HOH A . DA 4 HOH 2 402 7 HOH HOH A . DA 4 HOH 3 403 28 HOH HOH A . DA 4 HOH 4 404 22 HOH HOH A . DA 4 HOH 5 405 31 HOH HOH A . DA 4 HOH 6 406 6 HOH HOH A . DA 4 HOH 7 407 8 HOH HOH A . DA 4 HOH 8 408 20 HOH HOH A . DA 4 HOH 9 409 2 HOH HOH A . DA 4 HOH 10 410 11 HOH HOH A . DA 4 HOH 11 411 3 HOH HOH A . DA 4 HOH 12 412 34 HOH HOH A . DA 4 HOH 13 413 27 HOH HOH A . DA 4 HOH 14 414 13 HOH HOH A . DA 4 HOH 15 415 1 HOH HOH A . DA 4 HOH 16 416 25 HOH HOH A . DA 4 HOH 17 417 35 HOH HOH A . DA 4 HOH 18 418 24 HOH HOH A . DA 4 HOH 19 419 5 HOH HOH A . DA 4 HOH 20 420 10 HOH HOH A . DA 4 HOH 21 421 32 HOH HOH A . DA 4 HOH 22 422 4 HOH HOH A . DA 4 HOH 23 423 23 HOH HOH A . DA 4 HOH 24 424 12 HOH HOH A . DA 4 HOH 25 425 15 HOH HOH A . DA 4 HOH 26 426 33 HOH HOH A . DA 4 HOH 27 427 48 HOH HOH A . DA 4 HOH 28 428 30 HOH HOH A . DA 4 HOH 29 429 42 HOH HOH A . DA 4 HOH 30 430 26 HOH HOH A . DA 4 HOH 31 431 16 HOH HOH A . DA 4 HOH 32 432 40 HOH HOH A . DA 4 HOH 33 433 37 HOH HOH A . DA 4 HOH 34 434 21 HOH HOH A . DA 4 HOH 35 435 45 HOH HOH A . DA 4 HOH 36 436 39 HOH HOH A . DA 4 HOH 37 437 19 HOH HOH A . DA 4 HOH 38 438 14 HOH HOH A . DA 4 HOH 39 439 29 HOH HOH A . DA 4 HOH 40 440 44 HOH HOH A . DA 4 HOH 41 441 18 HOH HOH A . DA 4 HOH 42 442 49 HOH HOH A . DA 4 HOH 43 443 43 HOH HOH A . DA 4 HOH 44 444 36 HOH HOH A . DA 4 HOH 45 445 41 HOH HOH A . DA 4 HOH 46 446 17 HOH HOH A . DA 4 HOH 47 447 38 HOH HOH A . DA 4 HOH 48 448 47 HOH HOH A . DA 4 HOH 49 449 46 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id LYR _pdbx_struct_mod_residue.label_seq_id 255 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id LYR _pdbx_struct_mod_residue.auth_seq_id 255 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5050 ? 1 MORE 29 ? 1 'SSA (A^2)' 11930 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 431 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id DA _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2017-05-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0155 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXCD ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 SER _pdbx_validate_rmsd_bond.auth_seq_id_1 214 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 SER _pdbx_validate_rmsd_bond.auth_seq_id_2 214 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.333 _pdbx_validate_rmsd_bond.bond_target_value 1.418 _pdbx_validate_rmsd_bond.bond_deviation -0.085 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 17 ? ? -106.38 -78.30 2 1 LEU A 103 ? ? 77.71 144.17 3 1 THR A 131 ? ? -115.90 -77.33 4 1 ASN A 163 ? ? -156.16 79.64 5 1 SER A 236 ? ? 176.82 176.87 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 449 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 7.94 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 4 ? CG ? A GLU 4 CG 2 1 Y 1 A GLU 4 ? CD ? A GLU 4 CD 3 1 Y 1 A GLU 4 ? OE1 ? A GLU 4 OE1 4 1 Y 1 A GLU 4 ? OE2 ? A GLU 4 OE2 5 1 Y 1 A ASN 7 ? CG ? A ASN 7 CG 6 1 Y 1 A ASN 7 ? OD1 ? A ASN 7 OD1 7 1 Y 1 A ASN 7 ? ND2 ? A ASN 7 ND2 8 1 Y 1 A GLU 18 ? CD ? A GLU 18 CD 9 1 Y 1 A GLU 18 ? OE1 ? A GLU 18 OE1 10 1 Y 1 A GLU 18 ? OE2 ? A GLU 18 OE2 11 1 Y 1 A LYS 56 ? CE ? A LYS 56 CE 12 1 Y 1 A LYS 56 ? NZ ? A LYS 56 NZ 13 1 Y 1 A GLU 90 ? CG ? A GLU 90 CG 14 1 Y 1 A GLU 90 ? CD ? A GLU 90 CD 15 1 Y 1 A GLU 90 ? OE1 ? A GLU 90 OE1 16 1 Y 1 A GLU 90 ? OE2 ? A GLU 90 OE2 17 1 Y 1 A GLU 91 ? CG ? A GLU 91 CG 18 1 Y 1 A GLU 91 ? CD ? A GLU 91 CD 19 1 Y 1 A GLU 91 ? OE1 ? A GLU 91 OE1 20 1 Y 1 A GLU 91 ? OE2 ? A GLU 91 OE2 21 1 Y 1 A LYS 134 ? CE ? A LYS 134 CE 22 1 Y 1 A LYS 134 ? NZ ? A LYS 134 NZ 23 1 Y 1 A LYS 186 ? CE ? A LYS 186 CE 24 1 Y 1 A LYS 186 ? NZ ? A LYS 186 NZ 25 1 Y 1 A LYS 202 ? CG ? A LYS 202 CG 26 1 Y 1 A LYS 202 ? CD ? A LYS 202 CD 27 1 Y 1 A LYS 202 ? CE ? A LYS 202 CE 28 1 Y 1 A LYS 202 ? NZ ? A LYS 202 NZ 29 1 Y 1 A VAL 230 ? CB ? A VAL 230 CB 30 1 Y 1 A VAL 230 ? CG1 ? A VAL 230 CG1 31 1 Y 1 A VAL 230 ? CG2 ? A VAL 230 CG2 32 1 Y 1 A ASP 231 ? CB ? A ASP 231 CB 33 1 Y 1 A ASP 231 ? CG ? A ASP 231 CG 34 1 Y 1 A ASP 231 ? OD1 ? A ASP 231 OD1 35 1 Y 1 A ASP 231 ? OD2 ? A ASP 231 OD2 36 1 N 1 A LFA 301 ? C12 ? B LFA 1 C12 37 1 N 1 A LFA 301 ? C13 ? B LFA 1 C13 38 1 N 1 A LFA 301 ? C14 ? B LFA 1 C14 39 1 N 1 A LFA 301 ? C15 ? B LFA 1 C15 40 1 N 1 A LFA 301 ? C16 ? B LFA 1 C16 41 1 N 1 A LFA 301 ? C17 ? B LFA 1 C17 42 1 N 1 A LFA 301 ? C18 ? B LFA 1 C18 43 1 N 1 A LFA 301 ? C19 ? B LFA 1 C19 44 1 N 1 A LFA 301 ? C20 ? B LFA 1 C20 45 1 N 1 A LFA 302 ? C9 ? C LFA 1 C9 46 1 N 1 A LFA 302 ? C10 ? C LFA 1 C10 47 1 N 1 A LFA 302 ? C11 ? C LFA 1 C11 48 1 N 1 A LFA 302 ? C12 ? C LFA 1 C12 49 1 N 1 A LFA 302 ? C13 ? C LFA 1 C13 50 1 N 1 A LFA 302 ? C14 ? C LFA 1 C14 51 1 N 1 A LFA 302 ? C15 ? C LFA 1 C15 52 1 N 1 A LFA 302 ? C16 ? C LFA 1 C16 53 1 N 1 A LFA 302 ? C17 ? C LFA 1 C17 54 1 N 1 A LFA 302 ? C18 ? C LFA 1 C18 55 1 N 1 A LFA 302 ? C19 ? C LFA 1 C19 56 1 N 1 A LFA 302 ? C20 ? C LFA 1 C20 57 1 N 1 A LFA 303 ? C12 ? D LFA 1 C12 58 1 N 1 A LFA 303 ? C13 ? D LFA 1 C13 59 1 N 1 A LFA 303 ? C14 ? D LFA 1 C14 60 1 N 1 A LFA 303 ? C15 ? D LFA 1 C15 61 1 N 1 A LFA 303 ? C16 ? D LFA 1 C16 62 1 N 1 A LFA 303 ? C17 ? D LFA 1 C17 63 1 N 1 A LFA 303 ? C18 ? D LFA 1 C18 64 1 N 1 A LFA 303 ? C19 ? D LFA 1 C19 65 1 N 1 A LFA 303 ? C20 ? D LFA 1 C20 66 1 N 1 A LFA 304 ? C11 ? E LFA 1 C11 67 1 N 1 A LFA 304 ? C12 ? E LFA 1 C12 68 1 N 1 A LFA 304 ? C13 ? E LFA 1 C13 69 1 N 1 A LFA 304 ? C14 ? E LFA 1 C14 70 1 N 1 A LFA 304 ? C15 ? E LFA 1 C15 71 1 N 1 A LFA 304 ? C16 ? E LFA 1 C16 72 1 N 1 A LFA 304 ? C17 ? E LFA 1 C17 73 1 N 1 A LFA 304 ? C18 ? E LFA 1 C18 74 1 N 1 A LFA 304 ? C19 ? E LFA 1 C19 75 1 N 1 A LFA 304 ? C20 ? E LFA 1 C20 76 1 N 1 A LFA 305 ? C1 ? F LFA 1 C1 77 1 N 1 A LFA 305 ? C2 ? F LFA 1 C2 78 1 N 1 A LFA 305 ? C3 ? F LFA 1 C3 79 1 N 1 A LFA 305 ? C12 ? F LFA 1 C12 80 1 N 1 A LFA 305 ? C13 ? F LFA 1 C13 81 1 N 1 A LFA 305 ? C14 ? F LFA 1 C14 82 1 N 1 A LFA 305 ? C15 ? F LFA 1 C15 83 1 N 1 A LFA 305 ? C16 ? F LFA 1 C16 84 1 N 1 A LFA 305 ? C17 ? F LFA 1 C17 85 1 N 1 A LFA 305 ? C18 ? F LFA 1 C18 86 1 N 1 A LFA 305 ? C19 ? F LFA 1 C19 87 1 N 1 A LFA 305 ? C20 ? F LFA 1 C20 88 1 N 1 A LFA 306 ? C1 ? G LFA 1 C1 89 1 N 1 A LFA 306 ? C2 ? G LFA 1 C2 90 1 N 1 A LFA 306 ? C13 ? G LFA 1 C13 91 1 N 1 A LFA 306 ? C14 ? G LFA 1 C14 92 1 N 1 A LFA 306 ? C15 ? G LFA 1 C15 93 1 N 1 A LFA 306 ? C16 ? G LFA 1 C16 94 1 N 1 A LFA 306 ? C17 ? G LFA 1 C17 95 1 N 1 A LFA 306 ? C18 ? G LFA 1 C18 96 1 N 1 A LFA 306 ? C19 ? G LFA 1 C19 97 1 N 1 A LFA 306 ? C20 ? G LFA 1 C20 98 1 N 1 A LFA 307 ? C1 ? H LFA 1 C1 99 1 N 1 A LFA 307 ? C2 ? H LFA 1 C2 100 1 N 1 A LFA 307 ? C3 ? H LFA 1 C3 101 1 N 1 A LFA 307 ? C9 ? H LFA 1 C9 102 1 N 1 A LFA 307 ? C10 ? H LFA 1 C10 103 1 N 1 A LFA 307 ? C11 ? H LFA 1 C11 104 1 N 1 A LFA 307 ? C12 ? H LFA 1 C12 105 1 N 1 A LFA 307 ? C13 ? H LFA 1 C13 106 1 N 1 A LFA 307 ? C14 ? H LFA 1 C14 107 1 N 1 A LFA 307 ? C15 ? H LFA 1 C15 108 1 N 1 A LFA 307 ? C16 ? H LFA 1 C16 109 1 N 1 A LFA 307 ? C17 ? H LFA 1 C17 110 1 N 1 A LFA 307 ? C18 ? H LFA 1 C18 111 1 N 1 A LFA 307 ? C19 ? H LFA 1 C19 112 1 N 1 A LFA 307 ? C20 ? H LFA 1 C20 113 1 N 1 A LFA 308 ? C1 ? I LFA 1 C1 114 1 N 1 A LFA 308 ? C2 ? I LFA 1 C2 115 1 N 1 A LFA 308 ? C3 ? I LFA 1 C3 116 1 N 1 A LFA 308 ? C10 ? I LFA 1 C10 117 1 N 1 A LFA 308 ? C11 ? I LFA 1 C11 118 1 N 1 A LFA 308 ? C12 ? I LFA 1 C12 119 1 N 1 A LFA 308 ? C13 ? I LFA 1 C13 120 1 N 1 A LFA 308 ? C14 ? I LFA 1 C14 121 1 N 1 A LFA 308 ? C15 ? I LFA 1 C15 122 1 N 1 A LFA 308 ? C16 ? I LFA 1 C16 123 1 N 1 A LFA 308 ? C17 ? I LFA 1 C17 124 1 N 1 A LFA 308 ? C18 ? I LFA 1 C18 125 1 N 1 A LFA 308 ? C19 ? I LFA 1 C19 126 1 N 1 A LFA 308 ? C20 ? I LFA 1 C20 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A LYS 271 ? A LYS 271 4 1 Y 1 A ASN 272 ? A ASN 272 5 1 Y 1 A LYS 273 ? A LYS 273 6 1 Y 1 A GLU 274 ? A GLU 274 7 1 Y 1 A LEU 275 ? A LEU 275 8 1 Y 1 A VAL 276 ? A VAL 276 9 1 Y 1 A GLU 277 ? A GLU 277 10 1 Y 1 A ALA 278 ? A ALA 278 11 1 Y 1 A ASN 279 ? A ASN 279 12 1 Y 1 A SER 280 ? A SER 280 13 1 Y 1 A LEU 281 ? A LEU 281 14 1 Y 1 A GLU 282 ? A GLU 282 15 1 Y 1 A HIS 283 ? A HIS 283 16 1 Y 1 A HIS 284 ? A HIS 284 17 1 Y 1 A HIS 285 ? A HIS 285 18 1 Y 1 A HIS 286 ? A HIS 286 19 1 Y 1 A HIS 287 ? A HIS 287 20 1 Y 1 A HIS 288 ? A HIS 288 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 EICOSANE LFA 3 'IODIDE ION' IOD 4 water HOH #