HEADER TRANSFERASE/TRANSFERASE INHIBITOR 06-MAY-16 5JRQ TITLE BRAFV600E KINASE DOMAIN IN COMPLEX WITH CHEMICALLY LINKED VEMURAFENIB TITLE 2 INHIBITOR VEM-6-VEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 448-723); COMPND 5 SYNONYM: PROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE COMPND 6 HOMOLOG B1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, DIMER, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.GRASSO,R.MARMORSTEIN REVDAT 7 18-OCT-23 5JRQ 1 REMARK REVDAT 6 02-NOV-22 5JRQ 1 COMPND HETNAM FORMUL ATOM REVDAT 5 04-DEC-19 5JRQ 1 REMARK REVDAT 4 27-SEP-17 5JRQ 1 REMARK REVDAT 3 02-NOV-16 5JRQ 1 JRNL REVDAT 2 21-SEP-16 5JRQ 1 JRNL REVDAT 1 14-SEP-16 5JRQ 0 JRNL AUTH M.GRASSO,M.A.ESTRADA,C.VENTOCILLA,M.SAMANTA,J.MAKSIMOSKA, JRNL AUTH 2 J.VILLANUEVA,J.D.WINKLER,R.MARMORSTEIN JRNL TITL CHEMICALLY LINKED VEMURAFENIB INHIBITORS PROMOTE AN INACTIVE JRNL TITL 2 BRAF(V600E) CONFORMATION. JRNL REF ACS CHEM.BIOL. V. 11 2876 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 27571413 JRNL DOI 10.1021/ACSCHEMBIO.6B00529 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 22345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2133 - 5.4996 0.93 1474 151 0.2137 0.2525 REMARK 3 2 5.4996 - 4.3699 0.94 1437 141 0.1790 0.2038 REMARK 3 3 4.3699 - 3.8189 0.93 1418 142 0.1579 0.2229 REMARK 3 4 3.8189 - 3.4703 0.95 1461 142 0.1693 0.2200 REMARK 3 5 3.4703 - 3.2219 0.95 1444 141 0.1867 0.2318 REMARK 3 6 3.2219 - 3.0322 0.96 1478 144 0.1936 0.2719 REMARK 3 7 3.0322 - 2.8805 0.97 1465 147 0.2042 0.2907 REMARK 3 8 2.8805 - 2.7552 0.97 1457 146 0.2119 0.2973 REMARK 3 9 2.7552 - 2.6492 0.97 1484 148 0.2168 0.2658 REMARK 3 10 2.6492 - 2.5578 0.97 1492 149 0.2104 0.2884 REMARK 3 11 2.5578 - 2.4779 0.98 1473 129 0.2242 0.3209 REMARK 3 12 2.4779 - 2.4071 0.97 1469 146 0.2247 0.3223 REMARK 3 13 2.4071 - 2.3437 0.98 1490 142 0.2275 0.3071 REMARK 3 14 2.3437 - 2.2866 0.87 1307 128 0.2418 0.3224 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3999 REMARK 3 ANGLE : 1.178 5419 REMARK 3 CHIRALITY : 0.076 599 REMARK 3 PLANARITY : 0.005 681 REMARK 3 DIHEDRAL : 14.653 1444 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22366 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.287 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WO5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS PH 8.5, 14% PEG MONOMETHYL REMARK 280 ETHER 2000, AND 200MM TRIMETHYL AMINE N-OXIDE DIHYDRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.87650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 444 REMARK 465 SER A 445 REMARK 465 GLU A 446 REMARK 465 TRP A 604 REMARK 465 SER A 605 REMARK 465 GLY A 606 REMARK 465 SER A 607 REMARK 465 HIS A 608 REMARK 465 GLN A 609 REMARK 465 PHE A 610 REMARK 465 GLU A 611 REMARK 465 GLN A 612 REMARK 465 LEU A 613 REMARK 465 SER A 614 REMARK 465 GLY A 615 REMARK 465 GLN A 628 REMARK 465 ASP A 629 REMARK 465 SER A 630 REMARK 465 GLU A 720 REMARK 465 LEU A 721 REMARK 465 SER A 722 REMARK 465 GLY A 723 REMARK 465 GLY B 444 REMARK 465 SER B 445 REMARK 465 GLU B 446 REMARK 465 PHE B 468 REMARK 465 GLY B 469 REMARK 465 LYS B 601 REMARK 465 SER B 602 REMARK 465 ARG B 603 REMARK 465 TRP B 604 REMARK 465 SER B 605 REMARK 465 GLY B 606 REMARK 465 SER B 607 REMARK 465 HIS B 608 REMARK 465 GLN B 609 REMARK 465 PHE B 610 REMARK 465 GLU B 611 REMARK 465 GLN B 612 REMARK 465 LEU B 613 REMARK 465 SER B 614 REMARK 465 GLY B 615 REMARK 465 SER B 616 REMARK 465 GLN B 628 REMARK 465 ASP B 629 REMARK 465 SER B 630 REMARK 465 ASN B 658 REMARK 465 ILE B 659 REMARK 465 ASN B 660 REMARK 465 ASN B 661 REMARK 465 ARG B 662 REMARK 465 ASP B 663 REMARK 465 GLN B 664 REMARK 465 LEU B 721 REMARK 465 SER B 722 REMARK 465 GLY B 723 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 447 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 467 OG REMARK 470 PHE A 468 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 475 CG CD CE NZ REMARK 470 LYS A 499 CE NZ REMARK 470 LYS A 507 NZ REMARK 470 ARG A 509 NH1 NH2 REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 GLU A 533 CG CD OE1 OE2 REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 LYS A 547 CG CD CE NZ REMARK 470 GLU A 549 CG CD OE1 OE2 REMARK 470 LYS A 551 CD CE NZ REMARK 470 GLU A 586 CG CD OE1 OE2 REMARK 470 ARG A 603 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 631 CG OD1 ND2 REMARK 470 GLN A 636 OE1 NE2 REMARK 470 GLN A 653 CD OE1 NE2 REMARK 470 ASN A 658 CG OD1 ND2 REMARK 470 ILE A 659 CG1 CG2 CD1 REMARK 470 ASN A 660 CG OD1 ND2 REMARK 470 ARG A 662 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 663 CG OD1 OD2 REMARK 470 GLN A 664 CG CD OE1 NE2 REMARK 470 ILE A 665 CG1 CG2 CD1 REMARK 470 ILE A 666 CG1 CG2 CD1 REMARK 470 GLU A 667 CG CD OE1 OE2 REMARK 470 LYS A 680 CE NZ REMARK 470 SER A 683 OG REMARK 470 LYS A 687 CG CD CE NZ REMARK 470 LYS A 690 CD CE NZ REMARK 470 ARG A 691 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 698 CE NZ REMARK 470 LYS A 700 CG CD CE NZ REMARK 470 PHE B 447 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 462 CZ NH1 NH2 REMARK 470 LYS B 499 CE NZ REMARK 470 ARG B 506 CZ NH1 NH2 REMARK 470 LYS B 507 CG CD CE NZ REMARK 470 ARG B 509 CD NE CZ NH1 NH2 REMARK 470 LYS B 522 CG CD CE NZ REMARK 470 GLU B 533 CG CD OE1 OE2 REMARK 470 GLU B 545 CG CD OE1 OE2 REMARK 470 LYS B 547 CG CD CE NZ REMARK 470 GLU B 549 CG CD OE1 OE2 REMARK 470 LYS B 551 CD CE NZ REMARK 470 ARG B 575 CZ NH1 NH2 REMARK 470 GLU B 586 CG CD OE1 OE2 REMARK 470 ILE B 617 CG1 CG2 CD1 REMARK 470 LEU B 618 CG CD1 CD2 REMARK 470 ASN B 631 CG OD1 ND2 REMARK 470 GLN B 636 OE1 NE2 REMARK 470 GLN B 653 CD OE1 NE2 REMARK 470 LEU B 654 CG CD1 CD2 REMARK 470 ILE B 665 CG1 CG2 CD1 REMARK 470 GLU B 667 CG CD OE1 OE2 REMARK 470 LYS B 680 CG CD CE NZ REMARK 470 SER B 683 OG REMARK 470 LYS B 687 CG CD CE NZ REMARK 470 LYS B 690 CD CE NZ REMARK 470 ARG B 691 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 700 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 562 O HOH B 901 2.03 REMARK 500 O HOH A 972 O HOH A 981 2.17 REMARK 500 ND2 ASN A 580 O HOH A 901 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 468 -19.21 75.94 REMARK 500 TRP A 476 86.76 -162.27 REMARK 500 SER A 535 -145.26 53.17 REMARK 500 ALA A 543 -71.41 -96.93 REMARK 500 GLU A 545 34.30 37.78 REMARK 500 ARG A 575 -16.20 83.15 REMARK 500 ARG A 626 47.96 -105.85 REMARK 500 ARG A 662 -72.29 -57.94 REMARK 500 ASP A 663 -17.01 -48.69 REMARK 500 ARG A 682 154.43 -48.28 REMARK 500 ASP B 448 -56.75 -19.31 REMARK 500 TRP B 476 90.06 -170.04 REMARK 500 ARG B 509 114.44 -160.99 REMARK 500 SER B 535 -162.94 63.02 REMARK 500 ALA B 543 -79.08 -124.52 REMARK 500 ARG B 575 -17.58 74.70 REMARK 500 THR B 599 3.79 -56.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6N9 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMA A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6N9 B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMA B 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JSM RELATED DB: PDB REMARK 900 RELATED ID: 5JT2 RELATED DB: PDB DBREF 5JRQ A 448 723 UNP P15056 BRAF_HUMAN 448 723 DBREF 5JRQ B 448 723 UNP P15056 BRAF_HUMAN 448 723 SEQADV 5JRQ GLY A 444 UNP P15056 EXPRESSION TAG SEQADV 5JRQ SER A 445 UNP P15056 EXPRESSION TAG SEQADV 5JRQ GLU A 446 UNP P15056 EXPRESSION TAG SEQADV 5JRQ PHE A 447 UNP P15056 EXPRESSION TAG SEQADV 5JRQ ALA A 543 UNP P15056 ILE 543 ENGINEERED MUTATION SEQADV 5JRQ SER A 544 UNP P15056 ILE 544 ENGINEERED MUTATION SEQADV 5JRQ LYS A 551 UNP P15056 ILE 551 ENGINEERED MUTATION SEQADV 5JRQ ARG A 562 UNP P15056 GLN 562 ENGINEERED MUTATION SEQADV 5JRQ ASN A 588 UNP P15056 LEU 588 ENGINEERED MUTATION SEQADV 5JRQ GLU A 600 UNP P15056 VAL 600 ENGINEERED MUTATION SEQADV 5JRQ SER A 630 UNP P15056 LYS 630 ENGINEERED MUTATION SEQADV 5JRQ GLU A 667 UNP P15056 PHE 667 ENGINEERED MUTATION SEQADV 5JRQ SER A 673 UNP P15056 TYR 673 ENGINEERED MUTATION SEQADV 5JRQ ARG A 688 UNP P15056 ALA 688 ENGINEERED MUTATION SEQADV 5JRQ SER A 706 UNP P15056 LEU 706 ENGINEERED MUTATION SEQADV 5JRQ ARG A 709 UNP P15056 GLN 709 ENGINEERED MUTATION SEQADV 5JRQ GLU A 713 UNP P15056 SER 713 ENGINEERED MUTATION SEQADV 5JRQ GLU A 716 UNP P15056 LEU 716 ENGINEERED MUTATION SEQADV 5JRQ GLU A 720 UNP P15056 SER 720 ENGINEERED MUTATION SEQADV 5JRQ SER A 722 UNP P15056 PRO 722 ENGINEERED MUTATION SEQADV 5JRQ GLY A 723 UNP P15056 LYS 723 ENGINEERED MUTATION SEQADV 5JRQ GLY B 444 UNP P15056 EXPRESSION TAG SEQADV 5JRQ SER B 445 UNP P15056 EXPRESSION TAG SEQADV 5JRQ GLU B 446 UNP P15056 EXPRESSION TAG SEQADV 5JRQ PHE B 447 UNP P15056 EXPRESSION TAG SEQADV 5JRQ ALA B 543 UNP P15056 ILE 543 ENGINEERED MUTATION SEQADV 5JRQ SER B 544 UNP P15056 ILE 544 ENGINEERED MUTATION SEQADV 5JRQ LYS B 551 UNP P15056 ILE 551 ENGINEERED MUTATION SEQADV 5JRQ ARG B 562 UNP P15056 GLN 562 ENGINEERED MUTATION SEQADV 5JRQ ASN B 588 UNP P15056 LEU 588 ENGINEERED MUTATION SEQADV 5JRQ GLU B 600 UNP P15056 VAL 600 ENGINEERED MUTATION SEQADV 5JRQ SER B 630 UNP P15056 LYS 630 ENGINEERED MUTATION SEQADV 5JRQ GLU B 667 UNP P15056 PHE 667 ENGINEERED MUTATION SEQADV 5JRQ SER B 673 UNP P15056 TYR 673 ENGINEERED MUTATION SEQADV 5JRQ ARG B 688 UNP P15056 ALA 688 ENGINEERED MUTATION SEQADV 5JRQ SER B 706 UNP P15056 LEU 706 ENGINEERED MUTATION SEQADV 5JRQ ARG B 709 UNP P15056 GLN 709 ENGINEERED MUTATION SEQADV 5JRQ GLU B 713 UNP P15056 SER 713 ENGINEERED MUTATION SEQADV 5JRQ GLU B 716 UNP P15056 LEU 716 ENGINEERED MUTATION SEQADV 5JRQ GLU B 720 UNP P15056 SER 720 ENGINEERED MUTATION SEQADV 5JRQ SER B 722 UNP P15056 PRO 722 ENGINEERED MUTATION SEQADV 5JRQ GLY B 723 UNP P15056 LYS 723 ENGINEERED MUTATION SEQRES 1 A 280 GLY SER GLU PHE ASP ASP TRP GLU ILE PRO ASP GLY GLN SEQRES 2 A 280 ILE THR VAL GLY GLN ARG ILE GLY SER GLY SER PHE GLY SEQRES 3 A 280 THR VAL TYR LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL SEQRES 4 A 280 LYS MET LEU ASN VAL THR ALA PRO THR PRO GLN GLN LEU SEQRES 5 A 280 GLN ALA PHE LYS ASN GLU VAL GLY VAL LEU ARG LYS THR SEQRES 6 A 280 ARG HIS VAL ASN ILE LEU LEU PHE MET GLY TYR SER THR SEQRES 7 A 280 LYS PRO GLN LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SEQRES 8 A 280 SER SER LEU TYR HIS HIS LEU HIS ALA SER GLU THR LYS SEQRES 9 A 280 PHE GLU MET LYS LYS LEU ILE ASP ILE ALA ARG GLN THR SEQRES 10 A 280 ALA ARG GLY MET ASP TYR LEU HIS ALA LYS SER ILE ILE SEQRES 11 A 280 HIS ARG ASP LEU LYS SER ASN ASN ILE PHE LEU HIS GLU SEQRES 12 A 280 ASP ASN THR VAL LYS ILE GLY ASP PHE GLY LEU ALA THR SEQRES 13 A 280 GLU LYS SER ARG TRP SER GLY SER HIS GLN PHE GLU GLN SEQRES 14 A 280 LEU SER GLY SER ILE LEU TRP MET ALA PRO GLU VAL ILE SEQRES 15 A 280 ARG MET GLN ASP SER ASN PRO TYR SER PHE GLN SER ASP SEQRES 16 A 280 VAL TYR ALA PHE GLY ILE VAL LEU TYR GLU LEU MET THR SEQRES 17 A 280 GLY GLN LEU PRO TYR SER ASN ILE ASN ASN ARG ASP GLN SEQRES 18 A 280 ILE ILE GLU MET VAL GLY ARG GLY SER LEU SER PRO ASP SEQRES 19 A 280 LEU SER LYS VAL ARG SER ASN CYS PRO LYS ARG MET LYS SEQRES 20 A 280 ARG LEU MET ALA GLU CYS LEU LYS LYS LYS ARG ASP GLU SEQRES 21 A 280 ARG PRO SER PHE PRO ARG ILE LEU ALA GLU ILE GLU GLU SEQRES 22 A 280 LEU ALA ARG GLU LEU SER GLY SEQRES 1 B 280 GLY SER GLU PHE ASP ASP TRP GLU ILE PRO ASP GLY GLN SEQRES 2 B 280 ILE THR VAL GLY GLN ARG ILE GLY SER GLY SER PHE GLY SEQRES 3 B 280 THR VAL TYR LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL SEQRES 4 B 280 LYS MET LEU ASN VAL THR ALA PRO THR PRO GLN GLN LEU SEQRES 5 B 280 GLN ALA PHE LYS ASN GLU VAL GLY VAL LEU ARG LYS THR SEQRES 6 B 280 ARG HIS VAL ASN ILE LEU LEU PHE MET GLY TYR SER THR SEQRES 7 B 280 LYS PRO GLN LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SEQRES 8 B 280 SER SER LEU TYR HIS HIS LEU HIS ALA SER GLU THR LYS SEQRES 9 B 280 PHE GLU MET LYS LYS LEU ILE ASP ILE ALA ARG GLN THR SEQRES 10 B 280 ALA ARG GLY MET ASP TYR LEU HIS ALA LYS SER ILE ILE SEQRES 11 B 280 HIS ARG ASP LEU LYS SER ASN ASN ILE PHE LEU HIS GLU SEQRES 12 B 280 ASP ASN THR VAL LYS ILE GLY ASP PHE GLY LEU ALA THR SEQRES 13 B 280 GLU LYS SER ARG TRP SER GLY SER HIS GLN PHE GLU GLN SEQRES 14 B 280 LEU SER GLY SER ILE LEU TRP MET ALA PRO GLU VAL ILE SEQRES 15 B 280 ARG MET GLN ASP SER ASN PRO TYR SER PHE GLN SER ASP SEQRES 16 B 280 VAL TYR ALA PHE GLY ILE VAL LEU TYR GLU LEU MET THR SEQRES 17 B 280 GLY GLN LEU PRO TYR SER ASN ILE ASN ASN ARG ASP GLN SEQRES 18 B 280 ILE ILE GLU MET VAL GLY ARG GLY SER LEU SER PRO ASP SEQRES 19 B 280 LEU SER LYS VAL ARG SER ASN CYS PRO LYS ARG MET LYS SEQRES 20 B 280 ARG LEU MET ALA GLU CYS LEU LYS LYS LYS ARG ASP GLU SEQRES 21 B 280 ARG PRO SER PHE PRO ARG ILE LEU ALA GLU ILE GLU GLU SEQRES 22 B 280 LEU ALA ARG GLU LEU SER GLY HET 6N9 A 801 53 HET DMS A 802 10 HET GOL A 803 14 HET TMA A 804 17 HET 6N9 B 801 53 HET DMS B 802 10 HET TMA B 803 17 HETNAM 6N9 N-{2,4-DIFLUORO-3-[5-(4-METHOXYPHENYL)-1H-PYRROLO[2,3- HETNAM 2 6N9 B]PYRIDINE-3-CARBONYL]PHENYL}PROPANE-1-SULFONAMIDE HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETNAM TMA TETRAMETHYLAMMONIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 6N9 2(C24 H21 F2 N3 O4 S) FORMUL 4 DMS 2(C2 H6 O S) FORMUL 5 GOL C3 H8 O3 FORMUL 6 TMA 2(C4 H12 N 1+) FORMUL 10 HOH *175(H2 O) HELIX 1 AA1 PHE A 447 GLU A 451 5 5 HELIX 2 AA2 PRO A 453 ILE A 457 5 5 HELIX 3 AA3 THR A 491 ARG A 506 1 16 HELIX 4 AA4 SER A 536 ALA A 543 1 8 HELIX 5 AA5 GLU A 549 LYS A 570 1 22 HELIX 6 AA6 LYS A 578 ASN A 580 5 3 HELIX 7 AA7 LEU A 597 ARG A 603 1 7 HELIX 8 AA8 SER A 616 MET A 620 5 5 HELIX 9 AA9 ALA A 621 ARG A 626 1 6 HELIX 10 AB1 SER A 634 GLY A 652 1 19 HELIX 11 AB2 ASN A 661 ARG A 671 1 11 HELIX 12 AB3 ASP A 677 VAL A 681 5 5 HELIX 13 AB4 PRO A 686 LEU A 697 1 12 HELIX 14 AB5 LYS A 700 ARG A 704 5 5 HELIX 15 AB6 SER A 706 ARG A 719 1 14 HELIX 16 AB7 PHE B 447 GLU B 451 5 5 HELIX 17 AB8 PRO B 453 ILE B 457 5 5 HELIX 18 AB9 THR B 491 ARG B 506 1 16 HELIX 19 AC1 SER B 536 ALA B 543 1 8 HELIX 20 AC2 GLU B 549 LYS B 570 1 22 HELIX 21 AC3 LYS B 578 ASN B 580 5 3 HELIX 22 AC4 ALA B 621 ARG B 626 1 6 HELIX 23 AC5 SER B 634 GLY B 652 1 19 HELIX 24 AC6 ILE B 666 ARG B 671 1 6 HELIX 25 AC7 ASP B 677 VAL B 681 5 5 HELIX 26 AC8 PRO B 686 LEU B 697 1 12 HELIX 27 AC9 LYS B 700 ARG B 704 5 5 HELIX 28 AD1 SER B 706 GLU B 720 1 15 SHEET 1 AA1 5 THR A 458 SER A 465 0 SHEET 2 AA1 5 GLY A 469 LYS A 475 -1 O VAL A 471 N ILE A 463 SHEET 3 AA1 5 ASP A 479 LEU A 485 -1 O MET A 484 N THR A 470 SHEET 4 AA1 5 ALA A 526 GLN A 530 -1 O ILE A 527 N LYS A 483 SHEET 5 AA1 5 PHE A 516 SER A 520 -1 N MET A 517 O VAL A 528 SHEET 1 AA2 2 ILE A 582 LEU A 584 0 SHEET 2 AA2 2 VAL A 590 ILE A 592 -1 O LYS A 591 N PHE A 583 SHEET 1 AA3 5 THR B 458 GLY B 464 0 SHEET 2 AA3 5 VAL B 471 LYS B 475 -1 O VAL B 471 N GLY B 464 SHEET 3 AA3 5 ASP B 479 MET B 484 -1 O VAL B 482 N TYR B 472 SHEET 4 AA3 5 ALA B 526 GLN B 530 -1 O ILE B 527 N LYS B 483 SHEET 5 AA3 5 PHE B 516 SER B 520 -1 N GLY B 518 O VAL B 528 SHEET 1 AA4 2 ILE B 582 LEU B 584 0 SHEET 2 AA4 2 VAL B 590 ILE B 592 -1 O LYS B 591 N PHE B 583 CISPEP 1 LYS A 522 PRO A 523 0 3.75 CISPEP 2 LYS B 522 PRO B 523 0 1.01 CISPEP 3 ASN B 631 PRO B 632 0 -5.70 SITE 1 AC1 18 ILE A 463 VAL A 471 ALA A 481 LYS A 483 SITE 2 AC1 18 LEU A 514 ILE A 527 THR A 529 GLN A 530 SITE 3 AC1 18 TRP A 531 CYS A 532 SER A 535 PHE A 583 SITE 4 AC1 18 GLY A 593 ASP A 594 PHE A 595 GLY A 596 SITE 5 AC1 18 DMS A 802 HOH A 928 SITE 1 AC2 5 GLY A 466 ASN A 580 6N9 A 801 HOH A 928 SITE 2 AC2 5 HOH A 988 SITE 1 AC3 4 GLN A 530 ASP A 587 LYS A 591 HOH A 911 SITE 1 AC4 6 TRP A 450 ARG A 506 THR A 508 ARG A 509 SITE 2 AC4 6 LEU A 515 PHE A 516 SITE 1 AC5 16 ILE B 463 VAL B 471 ALA B 481 LYS B 483 SITE 2 AC5 16 LEU B 514 THR B 529 GLN B 530 TRP B 531 SITE 3 AC5 16 CYS B 532 SER B 535 PHE B 583 GLY B 593 SITE 4 AC5 16 ASP B 594 PHE B 595 GLY B 596 HOH B 917 SITE 1 AC6 2 ALA B 712 GLU B 716 SITE 1 AC7 6 TRP B 450 ARG B 506 THR B 508 ARG B 509 SITE 2 AC7 6 LEU B 515 PHE B 516 CRYST1 56.836 67.753 67.881 90.00 90.32 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017594 0.000000 0.000097 0.00000 SCALE2 0.000000 0.014759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014732 0.00000