HEADER HYDROLASE/RNA 07-MAY-16 5JS1 TITLE HUMAN ARGONAUTE2 BOUND TO AN SIRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGONAUTE-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAGO2,ARGONAUTE RISC CATALYTIC COMPONENT 2,EUKARYOTIC COMPND 5 TRANSLATION INITIATION FACTOR 2C 2,EIF2C 2,PAZ PIWI DOMAIN PROTEIN, COMPND 6 PPD,PROTEIN SLICER; COMPND 7 EC: 3.1.26.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SIRNA; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: SIRNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGO2, EIF2C2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS ARGONAUTE, SIRNA, RNAI, NUCLEASE, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.T.SCHIRLE,I.J.MACRAE REVDAT 3 27-SEP-23 5JS1 1 REMARK LINK REVDAT 2 10-AUG-16 5JS1 1 JRNL REVDAT 1 20-JUL-16 5JS1 0 JRNL AUTH N.T.SCHIRLE,G.A.KINBERGER,H.F.MURRAY,W.F.LIMA,T.P.PRAKASH, JRNL AUTH 2 I.J.MACRAE JRNL TITL STRUCTURAL ANALYSIS OF HUMAN ARGONAUTE-2 BOUND TO A MODIFIED JRNL TITL 2 SIRNA GUIDE. JRNL REF J.AM.CHEM.SOC. V. 138 8694 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27380263 JRNL DOI 10.1021/JACS.6B04454 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 29366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.5336 - 5.5494 0.97 2550 143 0.1836 0.2061 REMARK 3 2 5.5494 - 4.4085 0.98 2556 135 0.1851 0.2155 REMARK 3 3 4.4085 - 3.8524 0.98 2541 148 0.1933 0.2124 REMARK 3 4 3.8524 - 3.5007 0.99 2576 121 0.2221 0.2484 REMARK 3 5 3.5007 - 3.2500 0.97 2508 115 0.2427 0.2728 REMARK 3 6 3.2500 - 3.0586 0.99 2564 150 0.2475 0.3043 REMARK 3 7 3.0586 - 2.9055 0.99 2553 137 0.2552 0.2826 REMARK 3 8 2.9055 - 2.7791 0.98 2510 133 0.2563 0.2909 REMARK 3 9 2.7791 - 2.6722 0.97 2518 140 0.2564 0.3023 REMARK 3 10 2.6722 - 2.5800 0.98 2528 141 0.2684 0.3413 REMARK 3 11 2.5800 - 2.4994 0.97 2471 128 0.2886 0.3531 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6834 REMARK 3 ANGLE : 1.288 9288 REMARK 3 CHIRALITY : 0.083 1039 REMARK 3 PLANARITY : 0.006 1163 REMARK 3 DIHEDRAL : 17.230 2607 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JS1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29397 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.499 REMARK 200 RESOLUTION RANGE LOW (A) : 38.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : 0.39000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OLA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 50MM PHENOL, 10% REMARK 280 ISOPROPANOL, 5MM MAGNESIUM CHLORIDE, 100MM TRIS, PH 9.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.55950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 PRO A 16 REMARK 465 PRO A 17 REMARK 465 ILE A 18 REMARK 465 GLN A 19 REMARK 465 GLY A 20 REMARK 465 TYR A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 121 REMARK 465 GLU A 122 REMARK 465 GLY A 123 REMARK 465 LYS A 124 REMARK 465 ASP A 125 REMARK 465 PRO A 152 REMARK 465 SER A 153 REMARK 465 GLU A 186 REMARK 465 GLY A 187 REMARK 465 CYS A 188 REMARK 465 CYS A 272 REMARK 465 GLY A 273 REMARK 465 GLN A 274 REMARK 465 MET A 275 REMARK 465 LYS A 276 REMARK 465 ALA A 603 REMARK 465 GLY A 604 REMARK 465 ASP A 605 REMARK 465 LYS A 820 REMARK 465 GLU A 821 REMARK 465 HIS A 822 REMARK 465 ASP A 823 REMARK 465 SER A 824 REMARK 465 ALA A 825 REMARK 465 GLU A 826 REMARK 465 GLY A 827 REMARK 465 SER A 828 REMARK 465 HIS A 829 REMARK 465 THR A 830 REMARK 465 SER A 831 REMARK 465 GLY A 832 REMARK 465 GLN A 833 REMARK 465 SER A 834 REMARK 465 ASN A 835 REMARK 465 GLY A 836 REMARK 465 ARG A 837 REMARK 465 A B 10 REMARK 465 U B 11 REMARK 465 G B 12 REMARK 465 A B 13 REMARK 465 U B 14 REMARK 465 C B 15 REMARK 465 A B 16 REMARK 465 G B 17 REMARK 465 G B 18 REMARK 465 U B 19 REMARK 465 A B 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 478 O MET A 483 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 674 C GLY A 674 O 0.129 REMARK 500 PRO A 700 CD PRO A 700 N 0.193 REMARK 500 U B 1 P U B 1 OP3 -0.168 REMARK 500 U B 4 O3' C B 5 P -0.072 REMARK 500 C B 5 O3' U B 6 P -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 673 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 GLY A 674 CA - C - O ANGL. DEV. = 12.5 DEGREES REMARK 500 U B 2 C4' - C3' - O3' ANGL. DEV. = 14.7 DEGREES REMARK 500 U B 2 N1 - C1' - C2' ANGL. DEV. = -8.8 DEGREES REMARK 500 U B 2 C1' - C2' - O2' ANGL. DEV. = -23.1 DEGREES REMARK 500 A B 3 N9 - C1' - C2' ANGL. DEV. = -6.7 DEGREES REMARK 500 A B 3 C1' - C2' - O2' ANGL. DEV. = -18.4 DEGREES REMARK 500 C B 5 N1 - C1' - C2' ANGL. DEV. = -7.5 DEGREES REMARK 500 C B 5 C1' - C2' - O2' ANGL. DEV. = -18.6 DEGREES REMARK 500 A B 7 C4' - C3' - O3' ANGL. DEV. = 12.5 DEGREES REMARK 500 A B 7 N9 - C1' - C2' ANGL. DEV. = -8.5 DEGREES REMARK 500 U B 8 N1 - C1' - C2' ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 43 44.14 -76.81 REMARK 500 PHE A 82 40.27 -99.19 REMARK 500 ARG A 97 -85.72 -120.63 REMARK 500 LYS A 212 148.19 -176.42 REMARK 500 GLN A 246 61.89 61.97 REMARK 500 MET A 483 79.27 -113.97 REMARK 500 VAL A 539 -72.54 -89.55 REMARK 500 ASP A 641 36.31 -94.17 REMARK 500 LYS A 739 -57.49 70.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 597 OD1 REMARK 620 2 ASP A 669 OD2 85.8 REMARK 620 3 HOH A1005 O 86.5 143.9 REMARK 620 4 HOH A1011 O 80.0 105.4 107.9 REMARK 620 5 HOH A1016 O 90.2 74.8 70.0 170.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPH A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPH A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JS2 RELATED DB: PDB DBREF 5JS1 A 1 859 UNP Q9UKV8 AGO2_HUMAN 1 859 DBREF 5JS1 B 1 21 PDB 5JS1 5JS1 1 21 SEQADV 5JS1 ASP A 387 UNP Q9UKV8 SER 387 ENGINEERED MUTATION SEQRES 1 A 859 MET TYR SER GLY ALA GLY PRO ALA LEU ALA PRO PRO ALA SEQRES 2 A 859 PRO PRO PRO PRO ILE GLN GLY TYR ALA PHE LYS PRO PRO SEQRES 3 A 859 PRO ARG PRO ASP PHE GLY THR SER GLY ARG THR ILE LYS SEQRES 4 A 859 LEU GLN ALA ASN PHE PHE GLU MET ASP ILE PRO LYS ILE SEQRES 5 A 859 ASP ILE TYR HIS TYR GLU LEU ASP ILE LYS PRO GLU LYS SEQRES 6 A 859 CYS PRO ARG ARG VAL ASN ARG GLU ILE VAL GLU HIS MET SEQRES 7 A 859 VAL GLN HIS PHE LYS THR GLN ILE PHE GLY ASP ARG LYS SEQRES 8 A 859 PRO VAL PHE ASP GLY ARG LYS ASN LEU TYR THR ALA MET SEQRES 9 A 859 PRO LEU PRO ILE GLY ARG ASP LYS VAL GLU LEU GLU VAL SEQRES 10 A 859 THR LEU PRO GLY GLU GLY LYS ASP ARG ILE PHE LYS VAL SEQRES 11 A 859 SER ILE LYS TRP VAL SER CYS VAL SER LEU GLN ALA LEU SEQRES 12 A 859 HIS ASP ALA LEU SER GLY ARG LEU PRO SER VAL PRO PHE SEQRES 13 A 859 GLU THR ILE GLN ALA LEU ASP VAL VAL MET ARG HIS LEU SEQRES 14 A 859 PRO SER MET ARG TYR THR PRO VAL GLY ARG SER PHE PHE SEQRES 15 A 859 THR ALA SER GLU GLY CYS SER ASN PRO LEU GLY GLY GLY SEQRES 16 A 859 ARG GLU VAL TRP PHE GLY PHE HIS GLN SER VAL ARG PRO SEQRES 17 A 859 SER LEU TRP LYS MET MET LEU ASN ILE ASP VAL SER ALA SEQRES 18 A 859 THR ALA PHE TYR LYS ALA GLN PRO VAL ILE GLU PHE VAL SEQRES 19 A 859 CYS GLU VAL LEU ASP PHE LYS SER ILE GLU GLU GLN GLN SEQRES 20 A 859 LYS PRO LEU THR ASP SER GLN ARG VAL LYS PHE THR LYS SEQRES 21 A 859 GLU ILE LYS GLY LEU LYS VAL GLU ILE THR HIS CYS GLY SEQRES 22 A 859 GLN MET LYS ARG LYS TYR ARG VAL CYS ASN VAL THR ARG SEQRES 23 A 859 ARG PRO ALA SER HIS GLN THR PHE PRO LEU GLN GLN GLU SEQRES 24 A 859 SER GLY GLN THR VAL GLU CYS THR VAL ALA GLN TYR PHE SEQRES 25 A 859 LYS ASP ARG HIS LYS LEU VAL LEU ARG TYR PRO HIS LEU SEQRES 26 A 859 PRO CYS LEU GLN VAL GLY GLN GLU GLN LYS HIS THR TYR SEQRES 27 A 859 LEU PRO LEU GLU VAL CYS ASN ILE VAL ALA GLY GLN ARG SEQRES 28 A 859 CYS ILE LYS LYS LEU THR ASP ASN GLN THR SER THR MET SEQRES 29 A 859 ILE ARG ALA THR ALA ARG SER ALA PRO ASP ARG GLN GLU SEQRES 30 A 859 GLU ILE SER LYS LEU MET ARG SER ALA ASP PHE ASN THR SEQRES 31 A 859 ASP PRO TYR VAL ARG GLU PHE GLY ILE MET VAL LYS ASP SEQRES 32 A 859 GLU MET THR ASP VAL THR GLY ARG VAL LEU GLN PRO PRO SEQRES 33 A 859 SER ILE LEU TYR GLY GLY ARG ASN LYS ALA ILE ALA THR SEQRES 34 A 859 PRO VAL GLN GLY VAL TRP ASP MET ARG ASN LYS GLN PHE SEQRES 35 A 859 HIS THR GLY ILE GLU ILE LYS VAL TRP ALA ILE ALA CYS SEQRES 36 A 859 PHE ALA PRO GLN ARG GLN CYS THR GLU VAL HIS LEU LYS SEQRES 37 A 859 SER PHE THR GLU GLN LEU ARG LYS ILE SER ARG ASP ALA SEQRES 38 A 859 GLY MET PRO ILE GLN GLY GLN PRO CYS PHE CYS LYS TYR SEQRES 39 A 859 ALA GLN GLY ALA ASP SER VAL GLU PRO MET PHE ARG HIS SEQRES 40 A 859 LEU LYS ASN THR TYR ALA GLY LEU GLN LEU VAL VAL VAL SEQRES 41 A 859 ILE LEU PRO GLY LYS THR PRO VAL TYR ALA GLU VAL LYS SEQRES 42 A 859 ARG VAL GLY ASP THR VAL LEU GLY MET ALA THR GLN CYS SEQRES 43 A 859 VAL GLN MET LYS ASN VAL GLN ARG THR THR PRO GLN THR SEQRES 44 A 859 LEU SER ASN LEU CYS LEU LYS ILE ASN VAL LYS LEU GLY SEQRES 45 A 859 GLY VAL ASN ASN ILE LEU LEU PRO GLN GLY ARG PRO PRO SEQRES 46 A 859 VAL PHE GLN GLN PRO VAL ILE PHE LEU GLY ALA ASP VAL SEQRES 47 A 859 THR HIS PRO PRO ALA GLY ASP GLY LYS LYS PRO SER ILE SEQRES 48 A 859 ALA ALA VAL VAL GLY SER MET ASP ALA HIS PRO ASN ARG SEQRES 49 A 859 TYR CYS ALA THR VAL ARG VAL GLN GLN HIS ARG GLN GLU SEQRES 50 A 859 ILE ILE GLN ASP LEU ALA ALA MET VAL ARG GLU LEU LEU SEQRES 51 A 859 ILE GLN PHE TYR LYS SER THR ARG PHE LYS PRO THR ARG SEQRES 52 A 859 ILE ILE PHE TYR ARG ASP GLY VAL SER GLU GLY GLN PHE SEQRES 53 A 859 GLN GLN VAL LEU HIS HIS GLU LEU LEU ALA ILE ARG GLU SEQRES 54 A 859 ALA CYS ILE LYS LEU GLU LYS ASP TYR GLN PRO GLY ILE SEQRES 55 A 859 THR PHE ILE VAL VAL GLN LYS ARG HIS HIS THR ARG LEU SEQRES 56 A 859 PHE CYS THR ASP LYS ASN GLU ARG VAL GLY LYS SER GLY SEQRES 57 A 859 ASN ILE PRO ALA GLY THR THR VAL ASP THR LYS ILE THR SEQRES 58 A 859 HIS PRO THR GLU PHE ASP PHE TYR LEU CYS SER HIS ALA SEQRES 59 A 859 GLY ILE GLN GLY THR SER ARG PRO SER HIS TYR HIS VAL SEQRES 60 A 859 LEU TRP ASP ASP ASN ARG PHE SER SER ASP GLU LEU GLN SEQRES 61 A 859 ILE LEU THR TYR GLN LEU CYS HIS THR TYR VAL ARG CYS SEQRES 62 A 859 THR ARG SER VAL SER ILE PRO ALA PRO ALA TYR TYR ALA SEQRES 63 A 859 HIS LEU VAL ALA PHE ARG ALA ARG TYR HIS LEU VAL ASP SEQRES 64 A 859 LYS GLU HIS ASP SER ALA GLU GLY SER HIS THR SER GLY SEQRES 65 A 859 GLN SER ASN GLY ARG ASP HIS GLN ALA LEU ALA LYS ALA SEQRES 66 A 859 VAL GLN VAL HIS GLN ASP THR LEU ARG THR MET TYR PHE SEQRES 67 A 859 ALA SEQRES 1 B 21 U U A U C U A U A A U G A SEQRES 2 B 21 U C A G G U A A HET IPH A 901 7 HET IPH A 902 7 HET MG A 903 1 HETNAM IPH PHENOL HETNAM MG MAGNESIUM ION FORMUL 3 IPH 2(C6 H6 O) FORMUL 5 MG MG 2+ FORMUL 6 HOH *52(H2 O) HELIX 1 AA1 PRO A 67 PHE A 82 1 16 HELIX 2 AA2 LEU A 140 LEU A 147 1 8 HELIX 3 AA3 PRO A 155 ARG A 167 1 13 HELIX 4 AA4 ARG A 167 TYR A 174 1 8 HELIX 5 AA5 PRO A 229 LEU A 238 1 10 HELIX 6 AA6 THR A 251 LYS A 263 1 13 HELIX 7 AA7 VAL A 308 ARG A 315 1 8 HELIX 8 AA8 GLN A 332 HIS A 336 5 5 HELIX 9 AA9 THR A 357 ALA A 369 1 13 HELIX 10 AB1 SER A 371 ASP A 387 1 17 HELIX 11 AB2 PHE A 388 THR A 390 5 3 HELIX 12 AB3 ASP A 391 PHE A 397 1 7 HELIX 13 AB4 THR A 463 GLY A 482 1 20 HELIX 14 AB5 GLY A 497 ASP A 499 5 3 HELIX 15 AB6 SER A 500 TYR A 512 1 13 HELIX 16 AB7 PRO A 527 THR A 538 1 12 HELIX 17 AB8 MET A 549 ARG A 554 1 6 HELIX 18 AB9 THR A 556 LEU A 571 1 16 HELIX 19 AC1 PRO A 580 ARG A 583 5 4 HELIX 20 AC2 PRO A 584 GLN A 589 5 6 HELIX 21 AC3 ASP A 641 ARG A 658 1 18 HELIX 22 AC4 GLY A 674 GLU A 695 1 22 HELIX 23 AC5 ASP A 719 ARG A 723 5 5 HELIX 24 AC6 SER A 775 CYS A 787 1 13 HELIX 25 AC7 PRO A 800 LEU A 817 1 18 HELIX 26 AC8 HIS A 839 GLN A 847 1 9 HELIX 27 AC9 HIS A 849 THR A 855 1 7 SHEET 1 AA111 TYR A 625 GLN A 632 0 SHEET 2 AA111 SER A 610 SER A 617 -1 N ALA A 612 O ARG A 630 SHEET 3 AA111 VAL A 591 THR A 599 -1 N THR A 599 O ILE A 611 SHEET 4 AA111 ARG A 663 ASP A 669 1 O ILE A 665 N LEU A 594 SHEET 5 AA111 GLY A 701 GLN A 708 1 O ILE A 705 N ARG A 668 SHEET 6 AA111 SER A 763 ASP A 770 -1 O HIS A 764 N GLN A 708 SHEET 7 AA111 ASP A 747 CYS A 751 -1 N PHE A 748 O TYR A 765 SHEET 8 AA111 THR A 734 VAL A 736 -1 N VAL A 736 O TYR A 749 SHEET 9 AA111 THR A 406 VAL A 412 -1 N ARG A 411 O THR A 735 SHEET 10 AA111 ARG A 36 ALA A 42 -1 N ILE A 38 O GLY A 410 SHEET 11 AA111 LEU A 715 CYS A 717 -1 O PHE A 716 N GLN A 41 SHEET 1 AA2 4 THR A 175 VAL A 177 0 SHEET 2 AA2 4 SER A 180 THR A 183 -1 O PHE A 182 N THR A 175 SHEET 3 AA2 4 ARG A 196 SER A 209 -1 O PHE A 202 N PHE A 181 SHEET 4 AA2 4 PRO A 191 GLY A 193 -1 N LEU A 192 O ARG A 196 SHEET 1 AA3 6 THR A 175 VAL A 177 0 SHEET 2 AA3 6 SER A 180 THR A 183 -1 O PHE A 182 N THR A 175 SHEET 3 AA3 6 ARG A 196 SER A 209 -1 O PHE A 202 N PHE A 181 SHEET 4 AA3 6 LYS A 212 TYR A 225 -1 O ASP A 218 N HIS A 203 SHEET 5 AA3 6 PHE A 44 ASP A 48 -1 N MET A 47 O MET A 213 SHEET 6 AA3 6 MET A 400 VAL A 401 -1 O MET A 400 N ASP A 48 SHEET 1 AA4 5 VAL A 93 PHE A 94 0 SHEET 2 AA4 5 ASN A 99 THR A 102 -1 O TYR A 101 N VAL A 93 SHEET 3 AA4 5 ASP A 53 LYS A 62 -1 N TYR A 57 O LEU A 100 SHEET 4 AA4 5 ILE A 127 SER A 139 -1 O VAL A 138 N ILE A 54 SHEET 5 AA4 5 VAL A 113 THR A 118 -1 N LEU A 115 O VAL A 130 SHEET 1 AA5 5 THR A 337 PRO A 340 0 SHEET 2 AA5 5 PRO A 326 VAL A 330 -1 N LEU A 328 O LEU A 339 SHEET 3 AA5 5 LYS A 278 PRO A 288 -1 N ASN A 283 O GLN A 329 SHEET 4 AA5 5 LYS A 266 ILE A 269 -1 N VAL A 267 O TYR A 279 SHEET 5 AA5 5 CYS A 344 ILE A 346 -1 O ASN A 345 N GLU A 268 SHEET 1 AA6 2 THR A 293 GLN A 297 0 SHEET 2 AA6 2 THR A 303 THR A 307 -1 O VAL A 304 N LEU A 296 SHEET 1 AA7 3 ILE A 427 ALA A 428 0 SHEET 2 AA7 3 ILE A 418 LEU A 419 -1 N ILE A 418 O ALA A 428 SHEET 3 AA7 3 ILE A 577 LEU A 578 -1 O ILE A 577 N LEU A 419 SHEET 1 AA8 4 PHE A 491 TYR A 494 0 SHEET 2 AA8 4 TRP A 451 CYS A 455 1 N ILE A 453 O PHE A 491 SHEET 3 AA8 4 LEU A 517 LEU A 522 1 O VAL A 519 N ALA A 454 SHEET 4 AA8 4 THR A 544 GLN A 548 1 O VAL A 547 N LEU A 522 LINK OD1 ASP A 597 MG MG A 903 1555 1555 2.13 LINK OD2 ASP A 669 MG MG A 903 1555 1555 2.30 LINK MG MG A 903 O HOH A1005 1555 1555 2.34 LINK MG MG A 903 O HOH A1011 1555 1555 2.31 LINK MG MG A 903 O HOH A1016 1555 1555 2.16 CISPEP 1 LYS A 62 PRO A 63 0 21.23 CISPEP 2 HIS A 621 PRO A 622 0 -7.30 SITE 1 AC1 5 LEU A 650 TYR A 654 LYS A 660 LEU A 694 SITE 2 AC1 5 TYR A 698 SITE 1 AC2 4 PRO A 590 VAL A 591 ALA A 620 PHE A 653 SITE 1 AC3 6 ASP A 597 VAL A 598 ASP A 669 HOH A1005 SITE 2 AC3 6 HOH A1011 HOH A1016 CRYST1 62.932 107.119 68.198 90.00 106.98 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015890 0.000000 0.004854 0.00000 SCALE2 0.000000 0.009335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015332 0.00000