HEADER UNKNOWN FUNCTION 08-MAY-16 5JSI TITLE STRUCTURE OF MEMBRANE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIORHODOPSIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS ACTINOMARINA MINUTA; SOURCE 3 ORGANISM_TAXID: 1389454; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN, IODIDE, UNKNOWN FUNCTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.MELNIKOV,V.POLOVINKIN,K.KOVALEV,V.SHEVCHENKO,I.GUSHCHIN,A.POPOV, AUTHOR 2 V.GORDELIY REVDAT 2 08-MAR-23 5JSI 1 REMARK LINK REVDAT 1 31-MAY-17 5JSI 0 JRNL AUTH I.MELNIKOV,V.POLOVINKIN,K.KOVALEV,I.GUSHCHIN,M.SHEVTSOV, JRNL AUTH 2 V.SHEVCHENKO,A.MISHIN,A.ALEKSEEV,F.RODRIGUEZ-VALERA, JRNL AUTH 3 V.BORSHCHEVSKIY,V.CHEREZOV,G.A.LEONARD,V.GORDELIY,A.POPOV JRNL TITL FAST IODIDE-SAD PHASING FOR HIGH-THROUGHPUT MEMBRANE PROTEIN JRNL TITL 2 STRUCTURE DETERMINATION. JRNL REF SCI ADV V. 3 02952 2017 JRNL REFN ESSN 2375-2548 JRNL PMID 28508075 JRNL DOI 10.1126/SCIADV.1602952 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 25086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1311 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1539 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3315 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 257 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.224 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3617 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3630 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4834 ; 1.751 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8325 ; 1.049 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 4.888 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;37.280 ;23.178 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 505 ;15.133 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;22.765 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3821 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 758 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1718 ; 3.116 ; 3.604 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1717 ; 3.115 ; 3.602 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2144 ; 4.362 ; 5.394 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2145 ; 4.362 ; 5.396 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1899 ; 3.685 ; 3.986 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1900 ; 3.684 ; 3.987 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2691 ; 5.474 ; 5.796 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4300 ; 7.465 ;42.349 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4301 ; 7.464 ;42.356 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JSI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220799. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.85 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49905 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.9 REMARK 200 DATA REDUNDANCY : 1.880 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.83 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD, SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN MESO LIPIDIC CUBIC PHASE REMARK 280 CRYSTALLIZATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 217 REMARK 465 LYS A 218 REMARK 465 VAL A 219 REMARK 465 SER A 220 REMARK 465 MET B 1 REMARK 465 GLU B 217 REMARK 465 LYS B 218 REMARK 465 VAL B 219 REMARK 465 SER B 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 ARG A 7 CD NE CZ NH1 NH2 REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 LYS A 90 CD CE NZ REMARK 470 GLU A 148 CD OE1 OE2 REMARK 470 ASP A 185 CG OD1 OD2 REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 ARG B 7 CD NE CZ NH1 NH2 REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 31 CE NZ REMARK 470 THR B 66 CB OG1 CG2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 ARG B 141 CD NE CZ NH1 NH2 REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 LEU B 166 CD1 CD2 REMARK 470 VAL B 181 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 116 I IOD A 316 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 432 O HOH A 437 1655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 117 31.73 -80.52 REMARK 500 PHE A 184 24.12 -147.87 REMARK 500 PRO B 32 -39.51 -38.70 REMARK 500 SER B 63 28.66 -153.71 REMARK 500 PHE B 184 57.94 -119.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 301 REMARK 610 LFA A 302 REMARK 610 LFA A 303 REMARK 610 LFA A 304 REMARK 610 LFA A 305 REMARK 610 LFA A 306 REMARK 610 LFA A 307 REMARK 610 LFA A 308 REMARK 610 LFA A 309 REMARK 610 LFA A 310 REMARK 610 LFA A 311 REMARK 610 LFA A 312 REMARK 610 OLC A 322 REMARK 610 LFA B 301 REMARK 610 LFA B 302 REMARK 610 LFA B 303 REMARK 610 LFA B 304 REMARK 610 LFA B 305 REMARK 610 LFA B 306 REMARK 610 LFA B 307 REMARK 610 LFA B 308 REMARK 610 LFA B 309 REMARK 610 LFA B 310 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 322 DBREF 5JSI A 1 220 UNP S5DM51 S5DM51_9ACTN 1 220 DBREF 5JSI B 1 220 UNP S5DM51 S5DM51_9ACTN 1 220 SEQRES 1 A 220 MET GLU GLU LEU THR TYR ARG LEU PHE MET VAL ALA THR SEQRES 2 A 220 VAL GLY MET LEU ALA GLY THR VAL PHE LEU LEU ALA SER SEQRES 3 A 220 SER ARG GLU VAL LYS PRO GLU HIS ARG ARG GLY VAL TYR SEQRES 4 A 220 ILE SER ALA LEU VAL CYS GLY ILE ALA TRP TYR HIS TYR SEQRES 5 A 220 GLN LYS MET GLY ALA SER TRP GLU SER GLY SER TYR ASP SEQRES 6 A 220 THR GLY LEU ARG TYR VAL ASP TRP VAL LEU THR VAL PRO SEQRES 7 A 220 LEU MET PHE VAL GLU VAL LEU ALA VAL THR ARG LYS GLY SEQRES 8 A 220 ALA ALA TYR ASN GLU ALA VAL ARG ASN TRP GLY ILE ALA SEQRES 9 A 220 ALA THR VAL MET ILE GLY ALA GLY TYR TYR GLY GLU THR SEQRES 10 A 220 SER ALA ALA GLY SER ASN GLU TYR TRP THR GLY PHE VAL SEQRES 11 A 220 ILE ALA MET ALA THR TYR VAL TRP LEU MET ARG ASN LEU SEQRES 12 A 220 GLN ALA GLU GLY GLU GLY LEU LYS GLY ASP GLN ALA VAL SEQRES 13 A 220 ALA PHE GLU ASN ILE LYS ASN LEU ILE LEU VAL GLY TRP SEQRES 14 A 220 ILE ILE TYR PRO LEU GLY TYR ILE ALA PRO VAL VAL GLY SEQRES 15 A 220 ASP PHE ASP ALA ILE ARG GLU VAL LEU TYR THR ILE ALA SEQRES 16 A 220 ASP ILE ILE ASN LYR VAL GLY LEU GLY VAL LEU VAL LEU SEQRES 17 A 220 GLN MET ALA ARG VAL GLN SER GLY GLU LYS VAL SER SEQRES 1 B 220 MET GLU GLU LEU THR TYR ARG LEU PHE MET VAL ALA THR SEQRES 2 B 220 VAL GLY MET LEU ALA GLY THR VAL PHE LEU LEU ALA SER SEQRES 3 B 220 SER ARG GLU VAL LYS PRO GLU HIS ARG ARG GLY VAL TYR SEQRES 4 B 220 ILE SER ALA LEU VAL CYS GLY ILE ALA TRP TYR HIS TYR SEQRES 5 B 220 GLN LYS MET GLY ALA SER TRP GLU SER GLY SER TYR ASP SEQRES 6 B 220 THR GLY LEU ARG TYR VAL ASP TRP VAL LEU THR VAL PRO SEQRES 7 B 220 LEU MET PHE VAL GLU VAL LEU ALA VAL THR ARG LYS GLY SEQRES 8 B 220 ALA ALA TYR ASN GLU ALA VAL ARG ASN TRP GLY ILE ALA SEQRES 9 B 220 ALA THR VAL MET ILE GLY ALA GLY TYR TYR GLY GLU THR SEQRES 10 B 220 SER ALA ALA GLY SER ASN GLU TYR TRP THR GLY PHE VAL SEQRES 11 B 220 ILE ALA MET ALA THR TYR VAL TRP LEU MET ARG ASN LEU SEQRES 12 B 220 GLN ALA GLU GLY GLU GLY LEU LYS GLY ASP GLN ALA VAL SEQRES 13 B 220 ALA PHE GLU ASN ILE LYS ASN LEU ILE LEU VAL GLY TRP SEQRES 14 B 220 ILE ILE TYR PRO LEU GLY TYR ILE ALA PRO VAL VAL GLY SEQRES 15 B 220 ASP PHE ASP ALA ILE ARG GLU VAL LEU TYR THR ILE ALA SEQRES 16 B 220 ASP ILE ILE ASN LYR VAL GLY LEU GLY VAL LEU VAL LEU SEQRES 17 B 220 GLN MET ALA ARG VAL GLN SER GLY GLU LYS VAL SER MODRES 5JSI LYR A 200 LYS MODIFIED RESIDUE MODRES 5JSI LYR B 200 LYS MODIFIED RESIDUE HET LYR A 200 29 HET LYR B 200 29 HET LFA A 301 8 HET LFA A 302 13 HET LFA A 303 4 HET LFA A 304 8 HET LFA A 305 8 HET LFA A 306 10 HET LFA A 307 14 HET LFA A 308 15 HET LFA A 309 7 HET LFA A 310 7 HET LFA A 311 4 HET LFA A 312 5 HET IOD A 313 1 HET IOD A 314 1 HET IOD A 315 1 HET IOD A 316 1 HET IOD A 317 1 HET IOD A 318 1 HET IOD A 319 1 HET IOD A 320 1 HET IOD A 321 1 HET OLC A 322 16 HET LFA B 301 10 HET LFA B 302 10 HET LFA B 303 16 HET LFA B 304 16 HET LFA B 305 5 HET LFA B 306 15 HET LFA B 307 16 HET LFA B 308 13 HET LFA B 309 8 HET LFA B 310 7 HET IOD B 311 1 HET IOD B 312 1 HET IOD B 313 1 HET IOD B 314 1 HET IOD B 315 1 HET IOD B 316 1 HET IOD B 317 1 HET IOD B 318 1 HET IOD B 319 1 HET IOD B 320 1 HET IOD B 321 1 HET IOD B 322 1 HET IOD B 323 1 HETNAM LYR N~6~-[(2Z,4E,6E,8E)-3,7-DIMETHYL-9-(2,6,6- HETNAM 2 LYR TRIMETHYLCYCLOHEX-1-EN-1-YL)NONA-2,4,6,8- HETNAM 3 LYR TETRAENYL]LYSINE HETNAM LFA EICOSANE HETNAM IOD IODIDE ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN LFA LIPID FRAGMENT HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 1 LYR 2(C26 H42 N2 O2) FORMUL 3 LFA 22(C20 H42) FORMUL 15 IOD 22(I 1-) FORMUL 24 OLC C21 H40 O4 FORMUL 48 HOH *78(H2 O) HELIX 1 AA1 GLU A 2 SER A 27 1 26 HELIX 2 AA2 ARG A 28 VAL A 30 5 3 HELIX 3 AA3 LYS A 31 HIS A 34 5 4 HELIX 4 AA4 ARG A 35 GLY A 62 1 28 HELIX 5 AA5 THR A 66 ARG A 89 1 24 HELIX 6 AA6 LYS A 90 THR A 117 1 28 HELIX 7 AA7 SER A 122 GLU A 146 1 25 HELIX 8 AA8 LYS A 151 TRP A 169 1 19 HELIX 9 AA9 ILE A 170 GLY A 182 1 13 HELIX 10 AB1 PHE A 184 SER A 215 1 32 HELIX 11 AB2 GLU B 3 ARG B 28 1 26 HELIX 12 AB3 GLU B 29 VAL B 30 5 2 HELIX 13 AB4 LYS B 31 HIS B 34 5 4 HELIX 14 AB5 ARG B 35 SER B 61 1 27 HELIX 15 AB6 ASP B 65 ARG B 89 1 25 HELIX 16 AB7 LYS B 90 THR B 117 1 28 HELIX 17 AB8 SER B 122 GLY B 147 1 26 HELIX 18 AB9 LYS B 151 TRP B 169 1 19 HELIX 19 AC1 ILE B 170 GLY B 182 1 13 HELIX 20 AC2 ASP B 185 GLY B 216 1 32 LINK C ASN A 199 N LYR A 200 1555 1555 1.35 LINK C LYR A 200 N VAL A 201 1555 1555 1.32 LINK C ASN B 199 N LYR B 200 1555 1555 1.34 LINK C LYR B 200 N VAL B 201 1555 1555 1.33 SITE 1 AC1 5 TYR A 50 HIS A 51 TYR B 50 HIS B 51 SITE 2 AC1 5 LFA B 307 SITE 1 AC2 2 GLN A 144 LEU A 174 SITE 1 AC3 1 LFA A 305 SITE 1 AC4 2 GLY A 15 LFA A 303 SITE 1 AC5 1 HOH A 433 SITE 1 AC6 1 ASN B 163 SITE 1 AC7 1 ILE B 198 SITE 1 AC8 8 MET A 10 THR A 13 VAL A 14 GLY A 121 SITE 2 AC8 8 ASN A 123 TRP A 126 HOH A 409 HOH A 432 SITE 1 AC9 1 ALA A 145 SITE 1 AD1 1 TRP A 59 SITE 1 AD2 3 PRO A 179 PHE A 184 ASP A 185 SITE 1 AD3 3 TYR A 114 ASN A 123 THR A 127 SITE 1 AD4 4 TYR A 70 GLU A 116 ARG A 188 TYR A 192 SITE 1 AD5 1 TRP A 101 SITE 1 AD6 4 ASN A 160 ASN A 163 ASN B 160 ASN B 163 SITE 1 AD7 8 ASP A 65 GLY A 67 LEU A 68 TYR A 70 SITE 2 AD7 8 VAL A 71 GLY A 110 TYR A 113 LYS B 54 SITE 1 AD8 1 ILE B 197 SITE 1 AD9 2 ASN A 163 LEU B 164 SITE 1 AE1 2 HOH A 436 LEU B 43 SITE 1 AE2 2 MET B 10 GLY B 15 SITE 1 AE3 3 TYR A 50 LFA A 301 VAL B 74 SITE 1 AE4 5 LYS A 54 ASP B 65 VAL B 71 VAL B 74 SITE 2 AE4 5 TYR B 113 SITE 1 AE5 2 HOH A 438 HOH B 433 SITE 1 AE6 4 GLY A 110 TYR A 113 THR A 117 HOH A 438 SITE 1 AE7 3 LEU A 68 TYR B 50 HOH B 438 SITE 1 AE8 3 TYR B 114 ASN B 123 THR B 127 SITE 1 AE9 1 ASP B 183 SITE 1 AF1 1 LEU B 4 SITE 1 AF2 1 GLU B 3 SITE 1 AF3 2 GLY B 121 TRP B 126 SITE 1 AF4 1 TYR B 39 SITE 1 AF5 3 GLY A 152 GLY B 152 HOH B 437 SITE 1 AF6 2 ASN B 100 TRP B 101 CRYST1 40.793 56.771 57.286 63.61 78.48 80.21 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024514 -0.004229 -0.003533 0.00000 SCALE2 0.000000 0.017875 -0.008398 0.00000 SCALE3 0.000000 0.000000 0.019683 0.00000