HEADER VIRAL PROTEIN/INHIBITOR 09-MAY-16 5JSN TITLE BCL2-INHIBITOR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS REGULATOR BCL-2; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BCL2 INHIBITOR; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET29B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 12 ORGANISM_TAXID: 32644; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS BCL-2, ANTIBCL2, COMPLEX, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.W.SHEN,B.L.STODDARD REVDAT 2 06-MAR-24 5JSN 1 REMARK REVDAT 1 16-NOV-16 5JSN 0 JRNL AUTH S.BERGER,E.PROCKO,D.MARGINEANTU,E.F.LEE,B.W.SHEN,A.ZELTER, JRNL AUTH 2 D.A.SILVA,K.CHAWLA,M.J.HEROLD,J.M.GARNIER,R.JOHNSON, JRNL AUTH 3 M.J.MACCOSS,G.LESSENE,T.N.DAVIS,P.S.STAYTON,B.L.STODDARD, JRNL AUTH 4 W.D.FAIRLIE,D.M.HOCKENBERY,D.BAKER JRNL TITL COMPUTATIONALLY DESIGNED HIGH SPECIFICITY INHIBITORS JRNL TITL 2 DELINEATE THE ROLES OF BCL2 FAMILY PROTEINS IN CANCER. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27805565 JRNL DOI 10.7554/ELIFE.20352 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 30512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1605 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2108 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4374 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.56000 REMARK 3 B22 (A**2) : 17.56000 REMARK 3 B33 (A**2) : -35.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.627 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4470 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4316 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6008 ; 2.010 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9880 ; 1.734 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 6.454 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 247 ;34.429 ;23.036 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 838 ;18.695 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;19.549 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 630 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5034 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1097 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2113 ; 2.452 ; 3.298 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2112 ; 2.452 ; 3.298 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2633 ; 3.520 ; 4.923 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2634 ; 3.519 ; 4.923 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2357 ; 2.744 ; 3.686 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2358 ; 2.743 ; 3.686 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3375 ; 4.179 ; 5.401 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5319 ; 6.602 ;26.514 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5292 ; 6.577 ;26.393 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 7 209 C 7 209 15744 0.14 0.05 REMARK 3 2 B 3 117 D 3 117 13106 0.16 0.05 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.692 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, K, -L REMARK 3 TWIN FRACTION : 0.308 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5849 -5.6482 58.2767 REMARK 3 T TENSOR REMARK 3 T11: 0.0190 T22: 0.0499 REMARK 3 T33: 0.2169 T12: -0.0117 REMARK 3 T13: -0.0235 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.6993 L22: 2.9680 REMARK 3 L33: 3.8507 L12: 0.3465 REMARK 3 L13: 0.1616 L23: 0.7157 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: 0.2036 S13: -0.0792 REMARK 3 S21: -0.1102 S22: -0.0159 S23: 0.1523 REMARK 3 S31: 0.1937 S32: -0.2935 S33: -0.0151 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3315 10.5232 58.8693 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: 0.0309 REMARK 3 T33: 0.2508 T12: -0.0358 REMARK 3 T13: 0.0058 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 4.8921 L22: 2.2664 REMARK 3 L33: 3.6527 L12: -1.2923 REMARK 3 L13: -1.6137 L23: 0.8614 REMARK 3 S TENSOR REMARK 3 S11: 0.2251 S12: 0.1255 S13: 0.3492 REMARK 3 S21: -0.1739 S22: -0.0076 S23: -0.2213 REMARK 3 S31: -0.2828 S32: 0.0827 S33: -0.2175 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 209 REMARK 3 ORIGIN FOR THE GROUP (A): 36.2254 37.2449 72.6643 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: 0.0655 REMARK 3 T33: 0.1700 T12: -0.0134 REMARK 3 T13: 0.0429 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 2.2028 L22: 1.9796 REMARK 3 L33: 4.3307 L12: 0.6088 REMARK 3 L13: 0.9704 L23: 0.1984 REMARK 3 S TENSOR REMARK 3 S11: 0.0922 S12: -0.1762 S13: 0.1390 REMARK 3 S21: 0.1243 S22: -0.0236 S23: -0.0347 REMARK 3 S31: -0.1187 S32: 0.3290 S33: -0.0686 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 117 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4555 23.4038 70.2064 REMARK 3 T TENSOR REMARK 3 T11: 0.0927 T22: 0.0455 REMARK 3 T33: 0.2138 T12: -0.0338 REMARK 3 T13: 0.0319 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.9751 L22: 3.2358 REMARK 3 L33: 3.8876 L12: -0.9577 REMARK 3 L13: 1.3394 L23: -2.0137 REMARK 3 S TENSOR REMARK 3 S11: 0.0989 S12: -0.2512 S13: -0.2689 REMARK 3 S21: 0.1059 S22: 0.0916 S23: 0.2737 REMARK 3 S31: 0.1483 S32: -0.0180 S33: -0.1905 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 708 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 708 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 32.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 29.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% JEFFAMINE ED-2001, PH7.0/100 MM REMARK 280 HEPES PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.15700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.57850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.73550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 ARG A 6 REMARK 465 GLY A 33 REMARK 465 ASP A 34 REMARK 465 VAL A 35 REMARK 465 GLY A 36 REMARK 465 ALA A 37 REMARK 465 ALA A 38 REMARK 465 PRO A 39 REMARK 465 PRO A 40 REMARK 465 GLY A 41 REMARK 465 ALA A 42 REMARK 465 ALA A 43 REMARK 465 PRO A 44 REMARK 465 ALA A 45 REMARK 465 PRO A 46 REMARK 465 GLY A 47 REMARK 465 ILE A 48 REMARK 465 PHE A 49 REMARK 465 SER A 50 REMARK 465 SER A 51 REMARK 465 GLN A 52 REMARK 465 PRO A 53 REMARK 465 GLY A 54 REMARK 465 HIS A 55 REMARK 465 THR A 56 REMARK 465 PRO A 57 REMARK 465 HIS A 58 REMARK 465 PRO A 59 REMARK 465 ALA A 60 REMARK 465 ALA A 61 REMARK 465 SER A 62 REMARK 465 ARG A 63 REMARK 465 ASP A 64 REMARK 465 PRO A 65 REMARK 465 VAL A 66 REMARK 465 ALA A 67 REMARK 465 ARG A 68 REMARK 465 THR A 69 REMARK 465 SER A 70 REMARK 465 PRO A 71 REMARK 465 LEU A 72 REMARK 465 GLN A 73 REMARK 465 THR A 74 REMARK 465 PRO A 75 REMARK 465 ALA A 76 REMARK 465 ALA A 77 REMARK 465 PRO A 78 REMARK 465 GLY A 79 REMARK 465 ALA A 80 REMARK 465 ALA A 81 REMARK 465 ALA A 82 REMARK 465 GLY A 83 REMARK 465 PRO A 84 REMARK 465 ALA A 85 REMARK 465 LEU A 86 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 118 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 HIS C 3 REMARK 465 ALA C 4 REMARK 465 GLY C 5 REMARK 465 ARG C 6 REMARK 465 GLY C 33 REMARK 465 ASP C 34 REMARK 465 VAL C 35 REMARK 465 GLY C 36 REMARK 465 ALA C 37 REMARK 465 ALA C 38 REMARK 465 PRO C 39 REMARK 465 PRO C 40 REMARK 465 GLY C 41 REMARK 465 ALA C 42 REMARK 465 ALA C 43 REMARK 465 PRO C 44 REMARK 465 ALA C 45 REMARK 465 PRO C 46 REMARK 465 GLY C 47 REMARK 465 ILE C 48 REMARK 465 PHE C 49 REMARK 465 SER C 50 REMARK 465 SER C 51 REMARK 465 GLN C 52 REMARK 465 PRO C 53 REMARK 465 GLY C 54 REMARK 465 HIS C 55 REMARK 465 THR C 56 REMARK 465 PRO C 57 REMARK 465 HIS C 58 REMARK 465 PRO C 59 REMARK 465 ALA C 60 REMARK 465 ALA C 61 REMARK 465 SER C 62 REMARK 465 ARG C 63 REMARK 465 ASP C 64 REMARK 465 PRO C 65 REMARK 465 VAL C 66 REMARK 465 ALA C 67 REMARK 465 ARG C 68 REMARK 465 THR C 69 REMARK 465 SER C 70 REMARK 465 PRO C 71 REMARK 465 LEU C 72 REMARK 465 GLN C 73 REMARK 465 THR C 74 REMARK 465 PRO C 75 REMARK 465 ALA C 76 REMARK 465 ALA C 77 REMARK 465 PRO C 78 REMARK 465 GLY C 79 REMARK 465 ALA C 80 REMARK 465 ALA C 81 REMARK 465 ALA C 82 REMARK 465 GLY C 83 REMARK 465 PRO C 84 REMARK 465 ALA C 85 REMARK 465 LEU C 86 REMARK 465 HIS C 210 REMARK 465 HIS C 211 REMARK 465 HIS C 212 REMARK 465 HIS C 213 REMARK 465 HIS C 214 REMARK 465 HIS C 215 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 344 O HOH D 223 2.15 REMARK 500 OE1 GLN B 24 NH1 ARG D 20 2.17 REMARK 500 O HOH B 203 O HOH B 210 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 63 CB TYR B 63 CG -0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 106 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 146 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 LEU A 181 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG B 18 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 67 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 67 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 92 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 112 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG C 106 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 107 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 146 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU D 38 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG D 51 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG D 101 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG D 101 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 118 42.14 -86.47 REMARK 500 GLU A 165 32.81 70.62 REMARK 500 GLN C 118 44.48 -89.12 REMARK 500 LEU D 38 49.03 -99.41 REMARK 500 LEU D 115 -70.31 -61.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 37 LEU B 38 -149.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JSB RELATED DB: PDB REMARK 900 RELATED ID: 4OYD RELATED DB: PDB DBREF 5JSN A 1 207 UNP P10415 BCL2_HUMAN 1 207 DBREF 5JSN B 1 118 PDB 5JSN 5JSN 1 118 DBREF 5JSN C 1 207 UNP P10415 BCL2_HUMAN 1 207 DBREF 5JSN D 1 118 PDB 5JSN 5JSN 1 118 SEQADV 5JSN LEU A 208 UNP P10415 EXPRESSION TAG SEQADV 5JSN GLU A 209 UNP P10415 EXPRESSION TAG SEQADV 5JSN HIS A 210 UNP P10415 EXPRESSION TAG SEQADV 5JSN HIS A 211 UNP P10415 EXPRESSION TAG SEQADV 5JSN HIS A 212 UNP P10415 EXPRESSION TAG SEQADV 5JSN HIS A 213 UNP P10415 EXPRESSION TAG SEQADV 5JSN HIS A 214 UNP P10415 EXPRESSION TAG SEQADV 5JSN HIS A 215 UNP P10415 EXPRESSION TAG SEQADV 5JSN LEU C 208 UNP P10415 EXPRESSION TAG SEQADV 5JSN GLU C 209 UNP P10415 EXPRESSION TAG SEQADV 5JSN HIS C 210 UNP P10415 EXPRESSION TAG SEQADV 5JSN HIS C 211 UNP P10415 EXPRESSION TAG SEQADV 5JSN HIS C 212 UNP P10415 EXPRESSION TAG SEQADV 5JSN HIS C 213 UNP P10415 EXPRESSION TAG SEQADV 5JSN HIS C 214 UNP P10415 EXPRESSION TAG SEQADV 5JSN HIS C 215 UNP P10415 EXPRESSION TAG SEQRES 1 A 215 MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN ARG GLU SEQRES 2 A 215 ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER GLN ARG SEQRES 3 A 215 GLY TYR GLU TRP ASP ALA GLY ASP VAL GLY ALA ALA PRO SEQRES 4 A 215 PRO GLY ALA ALA PRO ALA PRO GLY ILE PHE SER SER GLN SEQRES 5 A 215 PRO GLY HIS THR PRO HIS PRO ALA ALA SER ARG ASP PRO SEQRES 6 A 215 VAL ALA ARG THR SER PRO LEU GLN THR PRO ALA ALA PRO SEQRES 7 A 215 GLY ALA ALA ALA GLY PRO ALA LEU SER PRO VAL PRO PRO SEQRES 8 A 215 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 9 A 215 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 10 A 215 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 11 A 215 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 12 A 215 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 13 A 215 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 14 A 215 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 15 A 215 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 16 A 215 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG LEU SEQRES 17 A 215 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 118 MET ALA ASP PRO LYS LYS VAL LEU ASP LYS ALA LYS ASP SEQRES 2 B 118 GLU ALA GLU ASN ARG VAL ARG GLU LEU LYS GLN ARG LEU SEQRES 3 B 118 GLU GLU LEU TYR LYS GLU ALA ARG LYS LEU ASP LEU THR SEQRES 4 B 118 GLN GLU MET ARG GLN GLU LEU VAL ASP LYS ALA ARG ALA SEQRES 5 B 118 ALA SER LEU GLN ALA ASN GLY ASP ILE PHE TYR ALA ILE SEQRES 6 B 118 LEU ARG ALA LEU ALA GLU ALA GLU LYS LEU LYS LYS ALA SEQRES 7 B 118 GLY LEU VAL ASN SER GLN GLN LEU ASP GLU LEU LYS ARG SEQRES 8 B 118 ARG LEU GLU GLU LEU ALA GLU GLU ALA ARG ARG LYS ALA SEQRES 9 B 118 GLU LYS LEU ARG ASP GLU PHE ARG LEU LYS LEU GLU TYR SEQRES 10 B 118 GLY SEQRES 1 C 215 MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN ARG GLU SEQRES 2 C 215 ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER GLN ARG SEQRES 3 C 215 GLY TYR GLU TRP ASP ALA GLY ASP VAL GLY ALA ALA PRO SEQRES 4 C 215 PRO GLY ALA ALA PRO ALA PRO GLY ILE PHE SER SER GLN SEQRES 5 C 215 PRO GLY HIS THR PRO HIS PRO ALA ALA SER ARG ASP PRO SEQRES 6 C 215 VAL ALA ARG THR SER PRO LEU GLN THR PRO ALA ALA PRO SEQRES 7 C 215 GLY ALA ALA ALA GLY PRO ALA LEU SER PRO VAL PRO PRO SEQRES 8 C 215 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 9 C 215 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 10 C 215 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 11 C 215 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 12 C 215 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 13 C 215 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 14 C 215 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 15 C 215 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 16 C 215 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG LEU SEQRES 17 C 215 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 118 MET ALA ASP PRO LYS LYS VAL LEU ASP LYS ALA LYS ASP SEQRES 2 D 118 GLU ALA GLU ASN ARG VAL ARG GLU LEU LYS GLN ARG LEU SEQRES 3 D 118 GLU GLU LEU TYR LYS GLU ALA ARG LYS LEU ASP LEU THR SEQRES 4 D 118 GLN GLU MET ARG GLN GLU LEU VAL ASP LYS ALA ARG ALA SEQRES 5 D 118 ALA SER LEU GLN ALA ASN GLY ASP ILE PHE TYR ALA ILE SEQRES 6 D 118 LEU ARG ALA LEU ALA GLU ALA GLU LYS LEU LYS LYS ALA SEQRES 7 D 118 GLY LEU VAL ASN SER GLN GLN LEU ASP GLU LEU LYS ARG SEQRES 8 D 118 ARG LEU GLU GLU LEU ALA GLU GLU ALA ARG ARG LYS ALA SEQRES 9 D 118 GLU LYS LEU ARG ASP GLU PHE ARG LEU LYS LEU GLU TYR SEQRES 10 D 118 GLY FORMUL 5 HOH *152(H2 O) HELIX 1 AA1 ASP A 10 GLN A 25 1 16 HELIX 2 AA2 PRO A 90 GLN A 118 1 29 HELIX 3 AA3 THR A 125 PHE A 138 1 14 HELIX 4 AA4 ASN A 143 ARG A 164 1 22 HELIX 5 AA5 PRO A 168 LEU A 185 1 18 HELIX 6 AA6 LEU A 185 ASN A 192 1 8 HELIX 7 AA7 GLY A 193 ARG A 207 1 15 HELIX 8 AA8 LEU A 208 GLU A 209 5 2 HELIX 9 AA9 ASP B 3 ASP B 3 5 1 HELIX 10 AB1 PRO B 4 LYS B 35 1 32 HELIX 11 AB2 THR B 39 ALA B 78 1 40 HELIX 12 AB3 ASN B 82 TYR B 117 1 36 HELIX 13 AB4 ASP C 10 GLN C 25 1 16 HELIX 14 AB5 PRO C 90 TYR C 108 1 19 HELIX 15 AB6 TYR C 108 GLN C 118 1 11 HELIX 16 AB7 PHE C 124 PHE C 138 1 15 HELIX 17 AB8 ASN C 143 ARG C 164 1 22 HELIX 18 AB9 PRO C 168 LEU C 185 1 18 HELIX 19 AC1 LEU C 185 ASN C 192 1 8 HELIX 20 AC2 GLY C 193 ARG C 207 1 15 HELIX 21 AC3 PRO D 4 LYS D 35 1 32 HELIX 22 AC4 THR D 39 ALA D 78 1 40 HELIX 23 AC5 ASN D 82 TYR D 117 1 36 CRYST1 65.005 65.005 134.314 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015383 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007445 0.00000