HEADER LYASE 09-MAY-16 5JSO TITLE STRUCTURES OF DDDQ FROM RUEGERIA LAC. REVEAL KEY RESIDUES FOR METAL TITLE 2 BINDING AND CATALYSIS - TRIS BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIMETHLYSULFONIOPROPRIONATE LYASE DDDQ; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DMSP LYASE; COMPND 5 EC: 4.4.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUEGERIA LACUSCAERULENSIS (STRAIN DSM 11314 / SOURCE 3 KCTC 2953 / ITI-1157); SOURCE 4 ORGANISM_TAXID: 644107; SOURCE 5 STRAIN: DSM 11314 / KCTC 2953 / ITI-1157; SOURCE 6 GENE: DDDQ, SL1157_0332; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIMETHYLSULFONIOPROPIONATE, LYASE, CUPIN, METALLOENZYME EXPDTA X-RAY DIFFRACTION AUTHOR A.E.BRUMMETT,M.DEY REVDAT 3 27-SEP-23 5JSO 1 LINK REVDAT 2 22-NOV-17 5JSO 1 REMARK REVDAT 1 22-FEB-17 5JSO 0 JRNL AUTH A.E.BRUMMETT,M.DEY JRNL TITL NEW MECHANISTIC INSIGHT FROM SUBSTRATE- AND PRODUCT-BOUND JRNL TITL 2 STRUCTURES OF THE METAL-DEPENDENT DIMETHYLSULFONIOPROPIONATE JRNL TITL 3 LYASE DDDQ. JRNL REF BIOCHEMISTRY V. 55 6162 2016 JRNL REFN ISSN 1520-4995 JRNL PMID 27755868 JRNL DOI 10.1021/ACS.BIOCHEM.6B00585 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 26449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.680 REMARK 3 FREE R VALUE TEST SET COUNT : 1239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8301 - 4.1594 0.98 2794 174 0.1767 0.2107 REMARK 3 2 4.1594 - 3.3017 0.98 2784 128 0.1693 0.1965 REMARK 3 3 3.3017 - 2.8844 0.99 2818 127 0.1870 0.2370 REMARK 3 4 2.8844 - 2.6207 0.99 2770 173 0.1922 0.2479 REMARK 3 5 2.6207 - 2.4328 1.00 2814 128 0.1938 0.2550 REMARK 3 6 2.4328 - 2.2894 1.00 2871 105 0.1884 0.2811 REMARK 3 7 2.2894 - 2.1748 0.98 2802 115 0.2009 0.2728 REMARK 3 8 2.1748 - 2.0801 0.99 2810 133 0.1927 0.2786 REMARK 3 9 2.0801 - 2.0000 0.99 2747 156 0.2005 0.2586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3084 REMARK 3 ANGLE : 0.819 4218 REMARK 3 CHIRALITY : 0.050 439 REMARK 3 PLANARITY : 0.006 545 REMARK 3 DIHEDRAL : 16.759 1057 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JSO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26468 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.817 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : 0.22000 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LA2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 0.2 M LICL, 20% PEG REMARK 280 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.88050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 191 REMARK 465 ALA A 192 REMARK 465 LEU A 193 REMARK 465 GLU A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 MET B 0 REMARK 465 ALA B 191 REMARK 465 ALA B 192 REMARK 465 LEU B 193 REMARK 465 GLU B 194 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 LEU A 156 CD1 CD2 REMARK 470 GLU A 181 CD OE1 OE2 REMARK 470 LEU A 186 CG CD1 CD2 REMARK 470 ARG A 188 CG CD NE CZ NH1 NH2 REMARK 470 THR B 2 CG2 REMARK 470 GLN B 15 CG CD OE1 NE2 REMARK 470 ARG B 56 NH1 NH2 REMARK 470 LEU B 156 CD1 CD2 REMARK 470 GLU B 181 CD OE1 OE2 REMARK 470 LEU B 186 CG CD1 CD2 REMARK 470 ARG B 188 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 496 O HOH A 509 2.14 REMARK 500 O HOH A 550 O HOH A 575 2.14 REMARK 500 O HOH B 484 O HOH B 528 2.18 REMARK 500 O HOH B 479 O HOH B 546 2.18 REMARK 500 O HOH B 413 O HOH B 546 2.18 REMARK 500 O THR B 167 O HOH B 401 2.19 REMARK 500 O HOH B 427 O HOH B 490 2.19 REMARK 500 O HOH A 429 O HOH A 535 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 431 O HOH B 401 2555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 76 -47.17 69.88 REMARK 500 GLU A 152 -9.82 82.12 REMARK 500 TRP A 160 12.63 58.58 REMARK 500 THR B 76 -51.27 72.12 REMARK 500 GLU B 152 -13.22 81.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 576 DISTANCE = 6.62 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 125 NE2 REMARK 620 2 GLU A 129 OE1 100.5 REMARK 620 3 GLU A 129 OE2 91.7 57.8 REMARK 620 4 HIS A 163 NE2 96.1 88.8 146.6 REMARK 620 5 TRS A 302 O1 118.8 127.9 86.5 117.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 125 NE2 REMARK 620 2 GLU B 129 OE1 90.5 REMARK 620 3 GLU B 129 OE2 99.3 58.9 REMARK 620 4 HIS B 163 NE2 95.2 142.5 83.6 REMARK 620 5 TRS B 302 O1 120.3 91.4 131.3 116.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JSR RELATED DB: PDB REMARK 900 RELATED ID: 5JSP RELATED DB: PDB DBREF 5JSO A 1 192 UNP D0CY60 DDDQ_RUELI 1 192 DBREF 5JSO B 1 192 UNP D0CY60 DDDQ_RUELI 1 192 SEQADV 5JSO MET A 0 UNP D0CY60 INITIATING METHIONINE SEQADV 5JSO LEU A 193 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO GLU A 194 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO HIS A 195 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO HIS A 196 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO HIS A 197 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO HIS A 198 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO HIS A 199 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO HIS A 200 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO MET B 0 UNP D0CY60 INITIATING METHIONINE SEQADV 5JSO LEU B 193 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO GLU B 194 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO HIS B 195 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO HIS B 196 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO HIS B 197 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO HIS B 198 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO HIS B 199 UNP D0CY60 EXPRESSION TAG SEQADV 5JSO HIS B 200 UNP D0CY60 EXPRESSION TAG SEQRES 1 A 201 MET MET THR LEU GLU ASN VAL LEU GLU ALA ALA ARG HIS SEQRES 2 A 201 LEU HIS GLN THR LEU PRO ALA LEU SER GLU PHE GLY ASN SEQRES 3 A 201 TRP PRO THR ASP LEU THR ALA THR GLY LEU GLN PRO ARG SEQRES 4 A 201 ALA ILE PRO ALA THR PRO LEU VAL GLN ALA LEU ASP GLN SEQRES 5 A 201 PRO GLY SER PRO ARG THR THR GLY LEU VAL GLN ALA ILE SEQRES 6 A 201 ARG SER ALA ALA HIS LEU ALA HIS TRP LYS ARG THR TYR SEQRES 7 A 201 THR GLU ALA GLU VAL GLY ALA ASP PHE ARG ASN ARG TYR SEQRES 8 A 201 GLY TYR PHE GLU LEU PHE GLY PRO THR GLY HIS PHE HIS SEQRES 9 A 201 SER THR GLN LEU ARG GLY TYR VAL ALA TYR TRP GLY ALA SEQRES 10 A 201 GLY LEU ASP TYR ASP TRP HIS SER HIS GLN ALA GLU GLU SEQRES 11 A 201 LEU TYR LEU THR LEU ALA GLY GLY ALA VAL PHE LYS VAL SEQRES 12 A 201 ASP GLY GLU ARG ALA PHE VAL GLY ALA GLU GLY THR ARG SEQRES 13 A 201 LEU HIS ALA SER TRP GLN SER HIS ALA MET SER THR GLY SEQRES 14 A 201 ASP GLN PRO ILE LEU THR PHE VAL LEU TRP ARG GLY GLU SEQRES 15 A 201 GLY LEU ASN ALA LEU PRO ARG MET ASP ALA ALA LEU GLU SEQRES 16 A 201 HIS HIS HIS HIS HIS HIS SEQRES 1 B 201 MET MET THR LEU GLU ASN VAL LEU GLU ALA ALA ARG HIS SEQRES 2 B 201 LEU HIS GLN THR LEU PRO ALA LEU SER GLU PHE GLY ASN SEQRES 3 B 201 TRP PRO THR ASP LEU THR ALA THR GLY LEU GLN PRO ARG SEQRES 4 B 201 ALA ILE PRO ALA THR PRO LEU VAL GLN ALA LEU ASP GLN SEQRES 5 B 201 PRO GLY SER PRO ARG THR THR GLY LEU VAL GLN ALA ILE SEQRES 6 B 201 ARG SER ALA ALA HIS LEU ALA HIS TRP LYS ARG THR TYR SEQRES 7 B 201 THR GLU ALA GLU VAL GLY ALA ASP PHE ARG ASN ARG TYR SEQRES 8 B 201 GLY TYR PHE GLU LEU PHE GLY PRO THR GLY HIS PHE HIS SEQRES 9 B 201 SER THR GLN LEU ARG GLY TYR VAL ALA TYR TRP GLY ALA SEQRES 10 B 201 GLY LEU ASP TYR ASP TRP HIS SER HIS GLN ALA GLU GLU SEQRES 11 B 201 LEU TYR LEU THR LEU ALA GLY GLY ALA VAL PHE LYS VAL SEQRES 12 B 201 ASP GLY GLU ARG ALA PHE VAL GLY ALA GLU GLY THR ARG SEQRES 13 B 201 LEU HIS ALA SER TRP GLN SER HIS ALA MET SER THR GLY SEQRES 14 B 201 ASP GLN PRO ILE LEU THR PHE VAL LEU TRP ARG GLY GLU SEQRES 15 B 201 GLY LEU ASN ALA LEU PRO ARG MET ASP ALA ALA LEU GLU SEQRES 16 B 201 HIS HIS HIS HIS HIS HIS HET FE A 301 1 HET TRS A 302 8 HET CL A 303 1 HET CL A 304 1 HET FE B 301 1 HET TRS B 302 8 HET CL B 303 1 HET CL B 304 1 HET CL B 305 1 HET GOL B 306 6 HETNAM FE FE (III) ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FE 2(FE 3+) FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 5 CL 5(CL 1-) FORMUL 12 GOL C3 H8 O3 FORMUL 13 HOH *349(H2 O) HELIX 1 AA1 THR A 2 LEU A 17 1 16 HELIX 2 AA2 LEU A 17 GLY A 24 1 8 HELIX 3 AA3 PRO A 41 ALA A 48 1 8 HELIX 4 AA4 THR A 57 ALA A 68 1 12 HELIX 5 AA5 THR A 78 ARG A 89 1 12 HELIX 6 AA6 THR B 2 GLN B 15 1 14 HELIX 7 AA7 LEU B 17 GLY B 24 1 8 HELIX 8 AA8 ALA B 42 ALA B 48 1 7 HELIX 9 AA9 THR B 57 ALA B 68 1 12 HELIX 10 AB1 HIS B 69 ALA B 71 5 3 HELIX 11 AB2 THR B 78 ARG B 89 1 12 SHEET 1 AA1 7 THR A 31 ALA A 32 0 SHEET 2 AA1 7 PHE A 102 HIS A 103 -1 O HIS A 103 N THR A 31 SHEET 3 AA1 7 TYR A 90 GLY A 97 1 N GLY A 97 O PHE A 102 SHEET 4 AA1 7 ARG A 108 TRP A 114 -1 O TYR A 113 N GLY A 91 SHEET 5 AA1 7 ILE A 172 ARG A 179 -1 O VAL A 176 N TYR A 110 SHEET 6 AA1 7 GLU A 128 GLY A 136 -1 N LEU A 134 O LEU A 173 SHEET 7 AA1 7 THR A 154 HIS A 157 -1 O ARG A 155 N TYR A 131 SHEET 1 AA2 5 GLU A 145 VAL A 149 0 SHEET 2 AA2 5 ALA A 138 VAL A 142 -1 N ALA A 138 O VAL A 149 SHEET 3 AA2 5 HIS A 163 SER A 166 -1 O ALA A 164 N LYS A 141 SHEET 4 AA2 5 ASP A 119 SER A 124 -1 N TYR A 120 O MET A 165 SHEET 5 AA2 5 ARG A 188 MET A 189 -1 O ARG A 188 N SER A 124 SHEET 1 AA3 7 THR B 31 ALA B 32 0 SHEET 2 AA3 7 PHE B 102 HIS B 103 -1 O HIS B 103 N THR B 31 SHEET 3 AA3 7 TYR B 90 GLY B 97 1 N GLY B 97 O PHE B 102 SHEET 4 AA3 7 ARG B 108 TRP B 114 -1 O TYR B 113 N GLY B 91 SHEET 5 AA3 7 ILE B 172 ARG B 179 -1 O VAL B 176 N TYR B 110 SHEET 6 AA3 7 GLU B 128 GLY B 136 -1 N LEU B 134 O LEU B 173 SHEET 7 AA3 7 THR B 154 HIS B 157 -1 O HIS B 157 N GLU B 129 SHEET 1 AA4 5 GLU B 145 VAL B 149 0 SHEET 2 AA4 5 ALA B 138 VAL B 142 -1 N ALA B 138 O VAL B 149 SHEET 3 AA4 5 HIS B 163 SER B 166 -1 O SER B 166 N VAL B 139 SHEET 4 AA4 5 ASP B 119 SER B 124 -1 N TYR B 120 O MET B 165 SHEET 5 AA4 5 ARG B 188 MET B 189 -1 O ARG B 188 N SER B 124 LINK NE2 HIS A 125 FE FE A 301 1555 1555 2.05 LINK OE1 GLU A 129 FE FE A 301 1555 1555 2.19 LINK OE2 GLU A 129 FE FE A 301 1555 1555 2.33 LINK NE2 HIS A 163 FE FE A 301 1555 1555 2.20 LINK FE FE A 301 O1 TRS A 302 1555 1555 2.37 LINK NE2 HIS B 125 FE FE B 301 1555 1555 2.05 LINK OE1 GLU B 129 FE FE B 301 1555 1555 2.22 LINK OE2 GLU B 129 FE FE B 301 1555 1555 2.24 LINK NE2 HIS B 163 FE FE B 301 1555 1555 2.29 LINK FE FE B 301 O1 TRS B 302 1555 1555 2.29 SITE 1 AC1 5 HIS A 125 GLU A 129 TYR A 131 HIS A 163 SITE 2 AC1 5 TRS A 302 SITE 1 AC2 7 TYR A 110 HIS A 123 HIS A 125 GLU A 129 SITE 2 AC2 7 TYR A 131 PRO A 187 FE A 301 SITE 1 AC3 3 GLY A 53 GLY A 136 HOH A 568 SITE 1 AC4 3 ARG A 38 ARG A 75 HOH A 519 SITE 1 AC5 5 HIS B 125 GLU B 129 TYR B 131 HIS B 163 SITE 2 AC5 5 TRS B 302 SITE 1 AC6 6 TYR B 110 HIS B 123 GLU B 129 TYR B 131 SITE 2 AC6 6 PRO B 187 FE B 301 SITE 1 AC7 2 GLY B 53 GLY B 136 SITE 1 AC8 4 ARG B 38 ARG B 75 HOH B 485 HOH B 538 SITE 1 AC9 3 TRP B 26 GOL B 306 HOH B 489 SITE 1 AD1 3 LEU B 7 LEU B 30 CL B 305 CRYST1 46.870 87.761 48.900 90.00 93.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021336 0.000000 0.001255 0.00000 SCALE2 0.000000 0.011395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020485 0.00000