HEADER TRANSFERASE 09-MAY-16 5JSQ TITLE TRYPANOSOME BRUCEI HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANFERASE IN TITLE 2 COMPLEX WITH A 9-[7-(PHOSPHONOHEPTYL]GUANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HGPRTASE; COMPND 5 EC: 2.4.2.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 GENE: HGPRT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, DIMER, ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.TERAN,L.GUDDAT REVDAT 2 27-SEP-23 5JSQ 1 REMARK REVDAT 1 09-NOV-16 5JSQ 0 JRNL AUTH D.TERAN,D.HOCKOVA,M.CESNEK,A.ZIKOVA,L.NAESENS,D.T.KEOUGH, JRNL AUTH 2 L.W.GUDDAT JRNL TITL CRYSTAL STRUCTURES AND INHIBITION OF TRYPANOSOMA BRUCEI JRNL TITL 2 HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE. JRNL REF SCI REP V. 6 35894 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27786284 JRNL DOI 10.1038/SREP35894 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 73865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.710 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3087 - 3.6223 1.00 5456 153 0.1630 0.1590 REMARK 3 2 3.6223 - 2.8753 1.00 5240 145 0.1517 0.1733 REMARK 3 3 2.8753 - 2.5119 1.00 5192 144 0.1569 0.1863 REMARK 3 4 2.5119 - 2.2823 1.00 5164 143 0.1492 0.1543 REMARK 3 5 2.2823 - 2.1187 1.00 5121 144 0.1459 0.1876 REMARK 3 6 2.1187 - 1.9938 1.00 5147 143 0.1463 0.1526 REMARK 3 7 1.9938 - 1.8939 1.00 5104 142 0.1539 0.1838 REMARK 3 8 1.8939 - 1.8115 1.00 5102 141 0.1583 0.1954 REMARK 3 9 1.8115 - 1.7417 1.00 5091 142 0.1675 0.1869 REMARK 3 10 1.7417 - 1.6816 1.00 5078 142 0.1690 0.2136 REMARK 3 11 1.6816 - 1.6290 1.00 5068 141 0.1758 0.1852 REMARK 3 12 1.6290 - 1.5825 1.00 5089 141 0.1830 0.1759 REMARK 3 13 1.5825 - 1.5408 1.00 5052 141 0.1988 0.2254 REMARK 3 14 1.5408 - 1.5032 0.97 4961 138 0.2563 0.2761 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3025 REMARK 3 ANGLE : 1.500 4136 REMARK 3 CHIRALITY : 0.099 480 REMARK 3 PLANARITY : 0.009 506 REMARK 3 DIHEDRAL : 18.431 1845 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 24.1838 27.1680 47.7179 REMARK 3 T TENSOR REMARK 3 T11: 0.0734 T22: 0.0818 REMARK 3 T33: 0.0204 T12: 0.0101 REMARK 3 T13: -0.0016 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.8068 L22: 0.9277 REMARK 3 L33: 0.5379 L12: 0.4161 REMARK 3 L13: -0.0352 L23: 0.0325 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.1217 S13: -0.0068 REMARK 3 S21: -0.0657 S22: -0.0066 S23: -0.0041 REMARK 3 S31: -0.0139 S32: -0.0107 S33: -0.0196 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JSQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221174. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5-5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73902 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.291 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.89100 REMARK 200 R SYM FOR SHELL (I) : 0.41100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 1TC2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M LITHIUM SULFATE REMARK 280 AND 0.1 M BIS-TRIS, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.32250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 22.32250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 486 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 565 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 437 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 548 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 556 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 81 REMARK 465 SER A 82 REMARK 465 SER A 83 REMARK 465 TYR A 84 REMARK 465 GLY A 85 REMARK 465 HIS A 86 REMARK 465 ASP A 87 REMARK 465 THR A 88 REMARK 465 LYS A 89 REMARK 465 SER A 90 REMARK 465 CYS A 91 REMARK 465 GLY A 92 REMARK 465 ARG A 93 REMARK 465 VAL A 94 REMARK 465 ASP A 95 REMARK 465 VAL A 96 REMARK 465 LYS A 97 REMARK 465 ALA A 98 REMARK 465 ASP A 99 REMARK 465 GLY A 100 REMARK 465 LEU A 101 REMARK 465 CYS A 102 REMARK 465 GLU A 200 REMARK 465 ARG A 201 REMARK 465 ARG A 202 REMARK 465 LYS A 203 REMARK 465 ALA A 204 REMARK 465 ALA A 205 REMARK 465 GLY A 206 REMARK 465 GLU A 207 REMARK 465 ALA A 208 REMARK 465 LYS A 209 REMARK 465 ARG A 210 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 81 REMARK 465 SER B 82 REMARK 465 SER B 83 REMARK 465 TYR B 84 REMARK 465 GLY B 85 REMARK 465 HIS B 86 REMARK 465 ASP B 87 REMARK 465 THR B 88 REMARK 465 LYS B 89 REMARK 465 SER B 90 REMARK 465 CYS B 91 REMARK 465 GLY B 92 REMARK 465 ARG B 93 REMARK 465 VAL B 94 REMARK 465 ASP B 95 REMARK 465 VAL B 96 REMARK 465 LYS B 97 REMARK 465 ALA B 98 REMARK 465 ASP B 99 REMARK 465 LYS B 197 REMARK 465 GLU B 198 REMARK 465 LEU B 199 REMARK 465 GLU B 200 REMARK 465 ARG B 201 REMARK 465 ARG B 202 REMARK 465 LYS B 203 REMARK 465 ALA B 204 REMARK 465 ALA B 205 REMARK 465 GLY B 206 REMARK 465 GLU B 207 REMARK 465 ALA B 208 REMARK 465 LYS B 209 REMARK 465 ARG B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 CYS B 102 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O20 6MS B 301 O HOH B 401 1.26 REMARK 500 NH1 ARG B 75 O HOH B 402 1.92 REMARK 500 O HOH A 523 O HOH A 537 2.01 REMARK 500 O HOH B 549 O HOH B 596 2.10 REMARK 500 O HOH B 574 O HOH B 592 2.12 REMARK 500 O HOH B 485 O HOH B 570 2.17 REMARK 500 O HOH A 513 O HOH A 552 2.18 REMARK 500 O HOH A 503 O HOH A 552 2.19 REMARK 500 O HOH A 533 O HOH A 564 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 558 O HOH B 564 3557 2.02 REMARK 500 OD1 ASN B 37 O HOH B 589 4557 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 114 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG A 182 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP B 114 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 43 -59.55 66.24 REMARK 500 ASN A 45 58.31 -162.52 REMARK 500 LEU A 53 136.89 81.92 REMARK 500 ASP A 117 -85.82 -128.82 REMARK 500 PRO A 163 -175.84 -69.45 REMARK 500 GLN A 176 -5.64 76.64 REMARK 500 LEU B 43 -61.64 69.20 REMARK 500 ASN B 45 61.67 -161.08 REMARK 500 LEU B 53 139.38 86.14 REMARK 500 LEU B 101 -35.49 -137.63 REMARK 500 ASP B 103 48.86 72.50 REMARK 500 ASP B 117 -86.29 -129.87 REMARK 500 PRO B 163 -157.58 -85.68 REMARK 500 GLN B 176 -0.55 76.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6MS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6MS B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JV5 RELATED DB: PDB REMARK 900 RELATED ID: 5K51 RELATED DB: PDB REMARK 900 RELATED ID: 5KAM RELATED DB: PDB REMARK 900 RELATED ID: 5KAP RELATED DB: PDB DBREF 5JSQ A 1 210 UNP Q07010 HPRT_TRYBB 1 210 DBREF 5JSQ B 1 210 UNP Q07010 HPRT_TRYBB 1 210 SEQADV 5JSQ HIS A -5 UNP Q07010 EXPRESSION TAG SEQADV 5JSQ HIS A -4 UNP Q07010 EXPRESSION TAG SEQADV 5JSQ HIS A -3 UNP Q07010 EXPRESSION TAG SEQADV 5JSQ HIS A -2 UNP Q07010 EXPRESSION TAG SEQADV 5JSQ HIS A -1 UNP Q07010 EXPRESSION TAG SEQADV 5JSQ HIS A 0 UNP Q07010 EXPRESSION TAG SEQADV 5JSQ HIS B -5 UNP Q07010 EXPRESSION TAG SEQADV 5JSQ HIS B -4 UNP Q07010 EXPRESSION TAG SEQADV 5JSQ HIS B -3 UNP Q07010 EXPRESSION TAG SEQADV 5JSQ HIS B -2 UNP Q07010 EXPRESSION TAG SEQADV 5JSQ HIS B -1 UNP Q07010 EXPRESSION TAG SEQADV 5JSQ HIS B 0 UNP Q07010 EXPRESSION TAG SEQRES 1 A 216 HIS HIS HIS HIS HIS HIS MET GLU PRO ALA CYS LYS TYR SEQRES 2 A 216 ASP PHE ALA THR SER VAL LEU PHE THR GLU ALA GLU LEU SEQRES 3 A 216 HIS THR ARG MET ARG GLY VAL ALA GLN ARG ILE ALA ASP SEQRES 4 A 216 ASP TYR SER ASN CYS ASN LEU LYS PRO LEU GLU ASN PRO SEQRES 5 A 216 LEU VAL ILE VAL SER VAL LEU LYS GLY SER PHE VAL PHE SEQRES 6 A 216 THR ALA ASP MET VAL ARG ILE LEU GLY ASP PHE GLY VAL SEQRES 7 A 216 PRO THR ARG VAL GLU PHE LEU ARG ALA SER SER TYR GLY SEQRES 8 A 216 HIS ASP THR LYS SER CYS GLY ARG VAL ASP VAL LYS ALA SEQRES 9 A 216 ASP GLY LEU CYS ASP ILE ARG GLY LYS HIS VAL LEU VAL SEQRES 10 A 216 LEU GLU ASP ILE LEU ASP THR ALA LEU THR LEU ARG GLU SEQRES 11 A 216 VAL VAL ASP SER LEU LYS LYS SER GLU PRO ALA SER ILE SEQRES 12 A 216 LYS THR LEU VAL ALA ILE ASP LYS PRO GLY GLY ARG LYS SEQRES 13 A 216 ILE PRO PHE THR ALA GLU TYR VAL VAL ALA ASP VAL PRO SEQRES 14 A 216 ASN VAL PHE VAL VAL GLY TYR GLY LEU ASP TYR ASP GLN SEQRES 15 A 216 SER TYR ARG GLU VAL ARG ASP VAL VAL ILE LEU LYS PRO SEQRES 16 A 216 SER VAL TYR GLU THR TRP GLY LYS GLU LEU GLU ARG ARG SEQRES 17 A 216 LYS ALA ALA GLY GLU ALA LYS ARG SEQRES 1 B 216 HIS HIS HIS HIS HIS HIS MET GLU PRO ALA CYS LYS TYR SEQRES 2 B 216 ASP PHE ALA THR SER VAL LEU PHE THR GLU ALA GLU LEU SEQRES 3 B 216 HIS THR ARG MET ARG GLY VAL ALA GLN ARG ILE ALA ASP SEQRES 4 B 216 ASP TYR SER ASN CYS ASN LEU LYS PRO LEU GLU ASN PRO SEQRES 5 B 216 LEU VAL ILE VAL SER VAL LEU LYS GLY SER PHE VAL PHE SEQRES 6 B 216 THR ALA ASP MET VAL ARG ILE LEU GLY ASP PHE GLY VAL SEQRES 7 B 216 PRO THR ARG VAL GLU PHE LEU ARG ALA SER SER TYR GLY SEQRES 8 B 216 HIS ASP THR LYS SER CYS GLY ARG VAL ASP VAL LYS ALA SEQRES 9 B 216 ASP GLY LEU CYS ASP ILE ARG GLY LYS HIS VAL LEU VAL SEQRES 10 B 216 LEU GLU ASP ILE LEU ASP THR ALA LEU THR LEU ARG GLU SEQRES 11 B 216 VAL VAL ASP SER LEU LYS LYS SER GLU PRO ALA SER ILE SEQRES 12 B 216 LYS THR LEU VAL ALA ILE ASP LYS PRO GLY GLY ARG LYS SEQRES 13 B 216 ILE PRO PHE THR ALA GLU TYR VAL VAL ALA ASP VAL PRO SEQRES 14 B 216 ASN VAL PHE VAL VAL GLY TYR GLY LEU ASP TYR ASP GLN SEQRES 15 B 216 SER TYR ARG GLU VAL ARG ASP VAL VAL ILE LEU LYS PRO SEQRES 16 B 216 SER VAL TYR GLU THR TRP GLY LYS GLU LEU GLU ARG ARG SEQRES 17 B 216 LYS ALA ALA GLY GLU ALA LYS ARG HET 6MS A 301 42 HET PEG A 302 7 HET GOL A 303 6 HET GOL A 304 6 HET MG A 305 1 HET SO4 A 306 5 HET 6MS B 301 42 HET PEG B 302 7 HET GOL B 303 6 HET MG B 304 1 HET SO4 B 305 5 HETNAM 6MS [6-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL) HETNAM 2 6MS HEXYL]PHOSPHONIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN 6MS 9-[7-(PHOSPHONOHEPTYL]GUANINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 6MS 2(C11 H18 N5 O4 P) FORMUL 4 PEG 2(C4 H10 O3) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 7 MG 2(MG 2+) FORMUL 8 SO4 2(O4 S 2-) FORMUL 14 HOH *401(H2 O) HELIX 1 AA1 THR A 16 TYR A 35 1 20 HELIX 2 AA2 SER A 36 ASN A 39 5 4 HELIX 3 AA3 SER A 56 PHE A 70 1 15 HELIX 4 AA4 ALA A 119 LYS A 131 1 13 HELIX 5 AA5 PRO A 146 ARG A 149 5 4 HELIX 6 AA6 LYS A 188 LEU A 199 1 12 HELIX 7 AA7 THR B 16 TYR B 35 1 20 HELIX 8 AA8 SER B 36 ASN B 39 5 4 HELIX 9 AA9 SER B 56 PHE B 70 1 15 HELIX 10 AB1 ALA B 119 LYS B 131 1 13 HELIX 11 AB2 PRO B 146 ARG B 149 5 4 HELIX 12 AB3 LYS B 188 GLY B 196 1 9 SHEET 1 AA1 3 ALA A 10 PHE A 15 0 SHEET 2 AA1 3 VAL A 184 LEU A 187 -1 O VAL A 184 N PHE A 15 SHEET 3 AA1 3 VAL A 167 VAL A 168 -1 N VAL A 168 O VAL A 185 SHEET 1 AA2 5 THR A 74 LEU A 79 0 SHEET 2 AA2 5 LEU A 47 VAL A 52 1 N ILE A 49 O ARG A 75 SHEET 3 AA2 5 HIS A 108 LEU A 116 1 O HIS A 108 N VAL A 48 SHEET 4 AA2 5 SER A 136 ASP A 144 1 O LEU A 140 N VAL A 111 SHEET 5 AA2 5 TYR A 157 ASP A 161 1 O ALA A 160 N ASP A 144 SHEET 1 AA3 3 ALA B 10 PHE B 15 0 SHEET 2 AA3 3 VAL B 184 LEU B 187 -1 O ILE B 186 N SER B 12 SHEET 3 AA3 3 VAL B 167 VAL B 168 -1 N VAL B 168 O VAL B 185 SHEET 1 AA4 5 THR B 74 LEU B 79 0 SHEET 2 AA4 5 LEU B 47 VAL B 52 1 N ILE B 49 O ARG B 75 SHEET 3 AA4 5 HIS B 108 LEU B 116 1 O HIS B 108 N VAL B 48 SHEET 4 AA4 5 SER B 136 ASP B 144 1 O LEU B 140 N VAL B 111 SHEET 5 AA4 5 TYR B 157 ASP B 161 1 O ALA B 160 N ASP B 144 LINK MG MG A 305 O1 SO4 A 306 1555 1555 2.44 LINK MG MG B 304 O4 SO4 B 305 1555 1555 2.21 SITE 1 AC1 19 LEU A 53 GLU A 113 ILE A 115 ASP A 117 SITE 2 AC1 19 THR A 118 ALA A 119 LEU A 120 THR A 121 SITE 3 AC1 19 LEU A 122 LYS A 145 VAL A 165 PHE A 166 SITE 4 AC1 19 VAL A 167 LEU A 172 ASP A 173 HOH A 401 SITE 5 AC1 19 HOH A 408 HOH A 465 HOH A 496 SITE 1 AC2 9 GLU A 17 HIS A 21 ARG A 182 HOH A 425 SITE 2 AC2 9 HIS B 21 ASP B 62 ARG B 65 ILE B 66 SITE 3 AC2 9 PEG B 302 SITE 1 AC3 5 ARG A 123 PHE A 153 THR A 154 HOH A 410 SITE 2 AC3 5 HOH A 431 SITE 1 AC4 9 TYR A 178 GLU A 180 VAL A 181 HOH A 409 SITE 2 AC4 9 HOH A 415 HOH A 435 HOH A 474 PRO B 42 SITE 3 AC4 9 GLY B 68 SITE 1 AC5 2 GLN A 176 SO4 A 306 SITE 1 AC6 5 LYS A 54 GLY A 55 ARG A 179 MG A 305 SITE 2 AC6 5 HOH A 418 SITE 1 AC7 18 LEU B 53 GLU B 113 ILE B 115 ASP B 117 SITE 2 AC7 18 THR B 118 ALA B 119 LEU B 120 THR B 121 SITE 3 AC7 18 LEU B 122 LYS B 145 VAL B 165 PHE B 166 SITE 4 AC7 18 VAL B 167 ASP B 173 HOH B 401 HOH B 422 SITE 5 AC7 18 HOH B 444 HOH B 520 SITE 1 AC8 9 HIS A 21 ASP A 62 ARG A 65 ILE A 66 SITE 2 AC8 9 PEG A 302 GLU B 17 HIS B 21 ARG B 182 SITE 3 AC8 9 HOH B 411 SITE 1 AC9 8 PRO A 42 PRO A 73 TYR B 178 GLU B 180 SITE 2 AC9 8 VAL B 181 HOH B 407 HOH B 425 HOH B 524 SITE 1 AD1 3 GLN B 176 ARG B 179 SO4 B 305 SITE 1 AD2 5 LYS B 54 GLY B 55 ARG B 179 MG B 304 SITE 2 AD2 5 HOH B 414 CRYST1 94.376 108.787 44.645 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022399 0.00000