HEADER TRANSFERASE/TRANSFERASE INHIBITOR 10-MAY-16 5JV0 TITLE CRYSTAL STRUCTURE OF HUMAN FPPS IN COMPLEX WITH AN ALLOSTERIC TITLE 2 INHIBITOR CL-08-038 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPS,(2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE,FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10,2.5.1.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.PARK,C.Y.LEUNG,Y.S.TSANTRIZOS,A.M.BERGHUIS REVDAT 3 27-SEP-23 5JV0 1 REMARK REVDAT 2 22-MAR-17 5JV0 1 JRNL REVDAT 1 15-MAR-17 5JV0 0 JRNL AUTH J.PARK,C.Y.LEUNG,A.N.MATRALIS,C.M.LACBAY,M.TSAKOS, JRNL AUTH 2 G.FERNANDEZ DE TROCONIZ,A.M.BERGHUIS,Y.S.TSANTRIZOS JRNL TITL PHARMACOPHORE MAPPING OF THIENOPYRIMIDINE-BASED JRNL TITL 2 MONOPHOSPHONATE (THP-MP) INHIBITORS OF THE HUMAN FARNESYL JRNL TITL 3 PYROPHOSPHATE SYNTHASE. JRNL REF J. MED. CHEM. V. 60 2119 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28208018 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01888 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 3 NUMBER OF REFLECTIONS : 16251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 687 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2701 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.41000 REMARK 3 B22 (A**2) : -3.41000 REMARK 3 B33 (A**2) : 6.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.361 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.642 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2891 ; 0.022 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2651 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3939 ; 2.132 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6070 ; 1.191 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 6.671 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;36.168 ;24.593 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 460 ;16.397 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;22.924 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3282 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 683 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1372 ; 1.533 ; 2.877 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1371 ; 1.524 ; 2.875 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1715 ; 2.490 ; 4.307 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1716 ; 2.492 ; 4.309 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1518 ; 2.437 ; 3.440 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1519 ; 2.437 ; 3.446 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2224 ; 3.665 ; 5.106 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3554 ; 7.672 ;27.123 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3555 ; 7.672 ;27.146 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 8 F 34 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9993 82.2631 9.5443 REMARK 3 T TENSOR REMARK 3 T11: 0.2264 T22: 0.3217 REMARK 3 T33: 0.2362 T12: -0.0849 REMARK 3 T13: -0.1806 T23: -0.0532 REMARK 3 L TENSOR REMARK 3 L11: 9.5420 L22: 6.1084 REMARK 3 L33: 12.3263 L12: 1.1912 REMARK 3 L13: -5.8484 L23: -1.8203 REMARK 3 S TENSOR REMARK 3 S11: -0.3152 S12: 0.9620 S13: 0.0297 REMARK 3 S21: -0.6318 S22: 0.4727 S23: 0.4292 REMARK 3 S31: 0.5817 S32: -1.0024 S33: -0.1575 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 35 F 76 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6244 84.2324 12.9880 REMARK 3 T TENSOR REMARK 3 T11: 0.1346 T22: 0.1555 REMARK 3 T33: 0.1294 T12: -0.0577 REMARK 3 T13: -0.0847 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 7.1879 L22: 1.6743 REMARK 3 L33: 4.7093 L12: 0.3638 REMARK 3 L13: -4.1479 L23: 0.0109 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: 0.6900 S13: -0.2007 REMARK 3 S21: -0.3550 S22: 0.0535 S23: 0.3761 REMARK 3 S31: -0.0061 S32: -0.7207 S33: -0.1047 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 77 F 147 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3525 83.2497 15.4707 REMARK 3 T TENSOR REMARK 3 T11: 0.0868 T22: 0.0605 REMARK 3 T33: 0.0224 T12: -0.0619 REMARK 3 T13: -0.0034 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 7.2104 L22: 2.8608 REMARK 3 L33: 1.9939 L12: -2.0860 REMARK 3 L13: -0.6115 L23: -0.7824 REMARK 3 S TENSOR REMARK 3 S11: -0.0848 S12: 0.2255 S13: -0.3553 REMARK 3 S21: -0.2562 S22: 0.0663 S23: 0.2006 REMARK 3 S31: 0.3014 S32: -0.3172 S33: 0.0185 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 148 F 179 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6888 92.7339 25.5501 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.0543 REMARK 3 T33: 0.0321 T12: -0.0270 REMARK 3 T13: 0.0384 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 10.5912 L22: 6.7453 REMARK 3 L33: 5.5969 L12: -5.1876 REMARK 3 L13: 4.7884 L23: -4.6686 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.4161 S13: 0.1473 REMARK 3 S21: 0.0284 S22: 0.0686 S23: 0.0460 REMARK 3 S31: -0.1154 S32: -0.0888 S33: -0.0659 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 182 F 293 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4266 77.5116 37.5867 REMARK 3 T TENSOR REMARK 3 T11: 0.1494 T22: 0.3536 REMARK 3 T33: 0.1725 T12: 0.0187 REMARK 3 T13: 0.0218 T23: 0.1366 REMARK 3 L TENSOR REMARK 3 L11: 5.3684 L22: 4.6714 REMARK 3 L33: 4.0859 L12: -1.0900 REMARK 3 L13: 1.1517 L23: -2.7547 REMARK 3 S TENSOR REMARK 3 S11: 0.0750 S12: -0.4985 S13: -0.6396 REMARK 3 S21: 0.2643 S22: -0.2955 S23: -0.3045 REMARK 3 S31: 0.3061 S32: 0.6242 S33: 0.2205 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 294 F 350 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5842 73.9701 40.2753 REMARK 3 T TENSOR REMARK 3 T11: 0.2944 T22: 0.2643 REMARK 3 T33: 0.2668 T12: 0.0161 REMARK 3 T13: 0.0859 T23: 0.0945 REMARK 3 L TENSOR REMARK 3 L11: 5.4723 L22: 5.1621 REMARK 3 L33: 3.5947 L12: -3.8217 REMARK 3 L13: 2.5527 L23: -3.8309 REMARK 3 S TENSOR REMARK 3 S11: 0.1430 S12: -0.3445 S13: -0.7700 REMARK 3 S21: 0.0554 S22: -0.1040 S23: 0.3788 REMARK 3 S31: 0.3895 S32: 0.1975 S33: -0.0390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17150 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 41.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.71300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0123 REMARK 200 STARTING MODEL: 4QXS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.85 M LITHIUM SULFATE, 0.425 M REMARK 280 AMMONIUM SULFATE, 15% GLYCEROL, 0.085 M TRI-SODIUM CITRATE, PH REMARK 280 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.99000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.77000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.99500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.77000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.98500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.77000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.77000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.99500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.77000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.77000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.98500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.99000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 111.54000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 111.54000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.99000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F -21 REMARK 465 GLY F -20 REMARK 465 SER F -19 REMARK 465 SER F -18 REMARK 465 HIS F -17 REMARK 465 HIS F -16 REMARK 465 HIS F -15 REMARK 465 HIS F -14 REMARK 465 HIS F -13 REMARK 465 HIS F -12 REMARK 465 SER F -11 REMARK 465 SER F -10 REMARK 465 GLY F -9 REMARK 465 ARG F -8 REMARK 465 GLU F -7 REMARK 465 ASN F -6 REMARK 465 LEU F -5 REMARK 465 TYR F -4 REMARK 465 PHE F -3 REMARK 465 GLN F -2 REMARK 465 GLY F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 ASN F 2 REMARK 465 GLY F 3 REMARK 465 ASP F 4 REMARK 465 GLN F 5 REMARK 465 ASN F 6 REMARK 465 SER F 7 REMARK 465 GLN F 180 REMARK 465 GLY F 181 REMARK 465 ARG F 351 REMARK 465 ARG F 352 REMARK 465 LYS F 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN F 15 CG CD OE1 NE2 REMARK 470 MET F 33 SD CE REMARK 470 LYS F 57 CD CE NZ REMARK 470 ARG F 75 CD NE CZ NH1 NH2 REMARK 470 VAL F 183 CG1 CG2 REMARK 470 LYS F 191 CD CE NZ REMARK 470 LYS F 223 CE NZ REMARK 470 LYS F 257 CG CD CE NZ REMARK 470 VAL F 271 CG1 CG2 REMARK 470 GLU F 281 CD OE1 OE2 REMARK 470 GLN F 292 CD OE1 NE2 REMARK 470 LYS F 293 CG CD CE NZ REMARK 470 GLU F 294 CD OE1 OE2 REMARK 470 LYS F 297 CG CD CE NZ REMARK 470 VAL F 298 CG1 CG2 REMARK 470 ARG F 300 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 307 CG CD OE1 OE2 REMARK 470 LYS F 350 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU F 190 CD GLU F 190 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG F 84 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG F 141 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP F 174 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU F 73 125.97 -33.98 REMARK 500 GLN F 77 56.03 -104.31 REMARK 500 VAL F 124 -75.49 -104.78 REMARK 500 GLU F 294 117.40 -27.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YL5 F 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YL5 F 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YL5 F 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JV2 RELATED DB: PDB REMARK 900 RELATED ID: 5JV1 RELATED DB: PDB REMARK 900 RELATED ID: 5JUZ RELATED DB: PDB DBREF 5JV0 F 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 5JV0 MET F -21 UNP P14324 INITIATING METHIONINE SEQADV 5JV0 GLY F -20 UNP P14324 EXPRESSION TAG SEQADV 5JV0 SER F -19 UNP P14324 EXPRESSION TAG SEQADV 5JV0 SER F -18 UNP P14324 EXPRESSION TAG SEQADV 5JV0 HIS F -17 UNP P14324 EXPRESSION TAG SEQADV 5JV0 HIS F -16 UNP P14324 EXPRESSION TAG SEQADV 5JV0 HIS F -15 UNP P14324 EXPRESSION TAG SEQADV 5JV0 HIS F -14 UNP P14324 EXPRESSION TAG SEQADV 5JV0 HIS F -13 UNP P14324 EXPRESSION TAG SEQADV 5JV0 HIS F -12 UNP P14324 EXPRESSION TAG SEQADV 5JV0 SER F -11 UNP P14324 EXPRESSION TAG SEQADV 5JV0 SER F -10 UNP P14324 EXPRESSION TAG SEQADV 5JV0 GLY F -9 UNP P14324 EXPRESSION TAG SEQADV 5JV0 ARG F -8 UNP P14324 EXPRESSION TAG SEQADV 5JV0 GLU F -7 UNP P14324 EXPRESSION TAG SEQADV 5JV0 ASN F -6 UNP P14324 EXPRESSION TAG SEQADV 5JV0 LEU F -5 UNP P14324 EXPRESSION TAG SEQADV 5JV0 TYR F -4 UNP P14324 EXPRESSION TAG SEQADV 5JV0 PHE F -3 UNP P14324 EXPRESSION TAG SEQADV 5JV0 GLN F -2 UNP P14324 EXPRESSION TAG SEQADV 5JV0 GLY F -1 UNP P14324 EXPRESSION TAG SEQADV 5JV0 HIS F 0 UNP P14324 EXPRESSION TAG SEQRES 1 F 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 F 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 F 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 F 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 F 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 F 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 F 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 F 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 F 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 F 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 F 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 F 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 F 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 F 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 F 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 F 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 F 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 F 375 LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 F 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 F 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 F 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 F 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 F 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 F 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 F 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 F 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 F 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 F 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 F 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET SO4 F 401 5 HET SO4 F 402 5 HET YL5 F 403 30 HET YL5 F 404 30 HET YL5 F 405 30 HETNAM SO4 SULFATE ION HETNAM YL5 [(1R)-2-(3-FLUOROPHENYL)-1-{[6-(4-METHYLPHENYL) HETNAM 2 YL5 THIENO[2,3-D]PYRIMIDIN-4-YL]AMINO}ETHYL]PHOSPHONIC HETNAM 3 YL5 ACID FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 YL5 3(C21 H19 F N3 O3 P S) FORMUL 7 HOH *111(H2 O) HELIX 1 AA1 TYR F 10 THR F 29 1 20 HELIX 2 AA2 HIS F 35 GLU F 37 5 3 HELIX 3 AA3 ILE F 38 ALA F 53 1 16 HELIX 4 AA4 TYR F 58 VAL F 72 1 15 HELIX 5 AA5 GLU F 73 GLN F 77 5 5 HELIX 6 AA6 ASP F 78 SER F 108 1 31 HELIX 7 AA7 CYS F 117 LYS F 121 5 5 HELIX 8 AA8 VAL F 124 LEU F 126 5 3 HELIX 9 AA9 ASP F 127 ARG F 148 1 22 HELIX 10 AB1 TYR F 152 ALA F 178 1 27 HELIX 11 AB2 ASP F 184 PHE F 188 5 5 HELIX 12 AB3 THR F 189 THR F 201 1 13 HELIX 13 AB4 THR F 201 PHE F 206 1 6 HELIX 14 AB5 PHE F 206 ALA F 217 1 12 HELIX 15 AB6 GLY F 221 GLY F 250 1 30 HELIX 16 AB7 ASP F 251 GLY F 256 1 6 HELIX 17 AB8 SER F 268 ALA F 278 1 11 HELIX 18 AB9 THR F 279 TYR F 290 1 12 HELIX 19 AC1 GLU F 294 LEU F 308 1 15 HELIX 20 AC2 ASP F 309 ALA F 333 1 25 HELIX 21 AC3 PRO F 338 TYR F 349 1 12 CISPEP 1 ALA F 334 PRO F 335 0 8.18 SITE 1 AC1 7 HIS F 35 PRO F 36 GLU F 37 ILE F 38 SITE 2 AC1 7 SER F 195 LYS F 198 TYR F 199 SITE 1 AC2 9 GLY F 56 LYS F 57 TYR F 58 ASN F 59 SITE 2 AC2 9 ARG F 60 YL5 F 403 HOH F 503 HOH F 518 SITE 3 AC2 9 HOH F 537 SITE 1 AC3 12 ASN F 59 THR F 63 SER F 205 PHE F 206 SITE 2 AC3 12 PHE F 239 GLN F 242 LEU F 246 LEU F 344 SITE 3 AC3 12 LYS F 347 LYS F 350 SO4 F 402 HOH F 559 SITE 1 AC4 11 ARG F 69 GLU F 70 LEU F 71 VAL F 72 SITE 2 AC4 11 GLU F 73 LYS F 76 GLY F 123 ALA F 217 SITE 3 AC4 11 ILE F 219 PRO F 335 PRO F 337 SITE 1 AC5 6 GLY F 114 ILE F 258 TYR F 322 LEU F 342 SITE 2 AC5 6 TYR F 349 LYS F 350 CRYST1 111.540 111.540 75.980 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008965 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013161 0.00000