HEADER TRANSFERASE/TRANSFERASE INHIBITOR 10-MAY-16 5JV1 TITLE CRYSTAL STRUCTURE OF HUMAN FPPS IN COMPLEX WITH AN ALLOSTERIC TITLE 2 INHIBITOR CL-08-066 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPS,(2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE,FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10,2.5.1.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.PARK,C.Y.LEUNG,Y.S.TSANTRIZOS,A.M.BERGHUIS REVDAT 4 27-SEP-23 5JV1 1 REMARK REVDAT 3 10-MAY-17 5JV1 1 REMARK REVDAT 2 22-MAR-17 5JV1 1 JRNL REVDAT 1 15-MAR-17 5JV1 0 JRNL AUTH J.PARK,C.Y.LEUNG,A.N.MATRALIS,C.M.LACBAY,M.TSAKOS, JRNL AUTH 2 G.FERNANDEZ DE TROCONIZ,A.M.BERGHUIS,Y.S.TSANTRIZOS JRNL TITL PHARMACOPHORE MAPPING OF THIENOPYRIMIDINE-BASED JRNL TITL 2 MONOPHOSPHONATE (THP-MP) INHIBITORS OF THE HUMAN FARNESYL JRNL TITL 3 PYROPHOSPHATE SYNTHASE. JRNL REF J. MED. CHEM. V. 60 2119 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28208018 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01888 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1123 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1476 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2635 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.38000 REMARK 3 B22 (A**2) : -3.38000 REMARK 3 B33 (A**2) : 6.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.231 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.528 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2768 ; 0.023 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2547 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3773 ; 2.136 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5816 ; 1.160 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 6.760 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;35.898 ;24.355 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 431 ;15.321 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.441 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 419 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3132 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 647 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 2.319 ; 3.838 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1340 ; 2.297 ; 3.835 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1671 ; 3.485 ; 5.746 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1672 ; 3.485 ; 5.748 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1427 ; 3.374 ; 4.359 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1428 ; 3.373 ; 4.364 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2103 ; 4.873 ; 6.463 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3349 ; 7.750 ;34.456 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3350 ; 7.749 ;34.477 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 9 F 30 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7074 81.0664 10.2504 REMARK 3 T TENSOR REMARK 3 T11: 0.1973 T22: 0.4065 REMARK 3 T33: 0.3920 T12: -0.1054 REMARK 3 T13: -0.1531 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 9.2165 L22: 10.7189 REMARK 3 L33: 6.7059 L12: 5.8624 REMARK 3 L13: -6.8642 L23: -4.0876 REMARK 3 S TENSOR REMARK 3 S11: -0.1550 S12: 0.5520 S13: 0.1125 REMARK 3 S21: -0.3704 S22: 0.3007 S23: 0.6927 REMARK 3 S31: 0.3593 S32: -1.0873 S33: -0.1457 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 35 F 76 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0704 83.5706 13.0851 REMARK 3 T TENSOR REMARK 3 T11: 0.0899 T22: 0.1468 REMARK 3 T33: 0.2788 T12: -0.0310 REMARK 3 T13: -0.0991 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 6.0712 L22: 2.6097 REMARK 3 L33: 5.4906 L12: 0.3923 REMARK 3 L13: -4.5815 L23: 0.2300 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: 0.6915 S13: -0.1617 REMARK 3 S21: -0.3991 S22: 0.0218 S23: 0.4954 REMARK 3 S31: -0.0264 S32: -0.7342 S33: -0.0846 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 77 F 147 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1859 82.9191 15.5974 REMARK 3 T TENSOR REMARK 3 T11: 0.0497 T22: 0.0583 REMARK 3 T33: 0.1482 T12: -0.0397 REMARK 3 T13: -0.0131 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 6.5985 L22: 3.6147 REMARK 3 L33: 2.0539 L12: -2.1544 REMARK 3 L13: -1.0578 L23: -0.4641 REMARK 3 S TENSOR REMARK 3 S11: -0.0866 S12: 0.3202 S13: -0.2901 REMARK 3 S21: -0.2801 S22: 0.0073 S23: 0.2603 REMARK 3 S31: 0.2601 S32: -0.3327 S33: 0.0794 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 148 F 179 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5440 92.3589 25.5938 REMARK 3 T TENSOR REMARK 3 T11: 0.0196 T22: 0.0170 REMARK 3 T33: 0.1784 T12: -0.0119 REMARK 3 T13: 0.0465 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 10.4120 L22: 6.2292 REMARK 3 L33: 6.1054 L12: -5.1967 REMARK 3 L13: 4.7903 L23: -4.0268 REMARK 3 S TENSOR REMARK 3 S11: 0.0784 S12: -0.2711 S13: 0.1178 REMARK 3 S21: 0.0378 S22: -0.0208 S23: 0.1330 REMARK 3 S31: -0.1527 S32: 0.0267 S33: -0.0575 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 182 F 293 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1549 77.5963 37.6681 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.3334 REMARK 3 T33: 0.3656 T12: 0.0311 REMARK 3 T13: 0.0119 T23: 0.0934 REMARK 3 L TENSOR REMARK 3 L11: 5.3044 L22: 5.6600 REMARK 3 L33: 5.3735 L12: -1.6896 REMARK 3 L13: 1.2878 L23: -3.7626 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: -0.5396 S13: -0.5719 REMARK 3 S21: 0.3298 S22: -0.2714 S23: -0.2331 REMARK 3 S31: 0.3134 S32: 0.6858 S33: 0.2110 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 294 F 350 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6409 73.8197 40.6707 REMARK 3 T TENSOR REMARK 3 T11: 0.2049 T22: 0.2405 REMARK 3 T33: 0.4813 T12: 0.0325 REMARK 3 T13: 0.0727 T23: 0.1115 REMARK 3 L TENSOR REMARK 3 L11: 6.0885 L22: 5.9233 REMARK 3 L33: 3.7507 L12: -4.1763 REMARK 3 L13: 3.2218 L23: -3.7105 REMARK 3 S TENSOR REMARK 3 S11: 0.2232 S12: -0.3614 S13: -0.6250 REMARK 3 S21: 0.1364 S22: -0.0943 S23: 0.2870 REMARK 3 S31: 0.4329 S32: 0.1868 S33: -0.1289 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21646 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 49.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.98200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0123 REMARK 200 STARTING MODEL: 4QXS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25.5% PEG 8000, 0.17 M SODIUM ACETATE, REMARK 280 15% GLYCEROL, 0.085 M SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.10000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.52500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.05000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.52500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.15000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.52500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.52500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.05000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.52500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.52500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.15000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 111.05000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 111.05000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.10000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F -21 REMARK 465 GLY F -20 REMARK 465 SER F -19 REMARK 465 SER F -18 REMARK 465 HIS F -17 REMARK 465 HIS F -16 REMARK 465 HIS F -15 REMARK 465 HIS F -14 REMARK 465 HIS F -13 REMARK 465 HIS F -12 REMARK 465 SER F -11 REMARK 465 SER F -10 REMARK 465 GLY F -9 REMARK 465 ARG F -8 REMARK 465 GLU F -7 REMARK 465 ASN F -6 REMARK 465 LEU F -5 REMARK 465 TYR F -4 REMARK 465 PHE F -3 REMARK 465 GLN F -2 REMARK 465 GLY F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 ASN F 2 REMARK 465 GLY F 3 REMARK 465 ASP F 4 REMARK 465 GLN F 5 REMARK 465 ASN F 6 REMARK 465 SER F 7 REMARK 465 ASP F 8 REMARK 465 ASP F 31 REMARK 465 GLU F 32 REMARK 465 MET F 33 REMARK 465 GLY F 34 REMARK 465 GLN F 180 REMARK 465 GLY F 181 REMARK 465 ARG F 351 REMARK 465 ARG F 352 REMARK 465 LYS F 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL F 9 CG1 CG2 REMARK 470 GLN F 12 CG CD OE1 NE2 REMARK 470 GLU F 13 CG CD OE1 OE2 REMARK 470 LYS F 14 NZ REMARK 470 GLN F 15 CG CD OE1 NE2 REMARK 470 LYS F 57 CE NZ REMARK 470 GLU F 73 CG CD OE1 OE2 REMARK 470 ARG F 75 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 76 NZ REMARK 470 VAL F 183 CG1 CG2 REMARK 470 LYS F 191 CD CE NZ REMARK 470 LYS F 223 CE NZ REMARK 470 LYS F 257 CG CD CE NZ REMARK 470 GLU F 281 CG CD OE1 OE2 REMARK 470 LYS F 287 CG CD CE NZ REMARK 470 GLU F 288 CG CD OE1 OE2 REMARK 470 ASN F 289 CG OD1 ND2 REMARK 470 GLN F 292 CG CD OE1 NE2 REMARK 470 LYS F 293 CG CD CE NZ REMARK 470 GLU F 294 CG CD OE1 OE2 REMARK 470 GLU F 296 CG CD OE1 OE2 REMARK 470 LYS F 297 CG CD CE NZ REMARK 470 ARG F 300 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 307 CG CD OE1 OE2 REMARK 470 LYS F 347 NZ REMARK 470 LYS F 350 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU F 318 CD GLU F 318 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG F 141 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP F 174 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YL6 F 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YL6 F 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JV2 RELATED DB: PDB REMARK 900 RELATED ID: 5JV0 RELATED DB: PDB REMARK 900 RELATED ID: 5JUZ RELATED DB: PDB DBREF 5JV1 F 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 5JV1 MET F -21 UNP P14324 INITIATING METHIONINE SEQADV 5JV1 GLY F -20 UNP P14324 EXPRESSION TAG SEQADV 5JV1 SER F -19 UNP P14324 EXPRESSION TAG SEQADV 5JV1 SER F -18 UNP P14324 EXPRESSION TAG SEQADV 5JV1 HIS F -17 UNP P14324 EXPRESSION TAG SEQADV 5JV1 HIS F -16 UNP P14324 EXPRESSION TAG SEQADV 5JV1 HIS F -15 UNP P14324 EXPRESSION TAG SEQADV 5JV1 HIS F -14 UNP P14324 EXPRESSION TAG SEQADV 5JV1 HIS F -13 UNP P14324 EXPRESSION TAG SEQADV 5JV1 HIS F -12 UNP P14324 EXPRESSION TAG SEQADV 5JV1 SER F -11 UNP P14324 EXPRESSION TAG SEQADV 5JV1 SER F -10 UNP P14324 EXPRESSION TAG SEQADV 5JV1 GLY F -9 UNP P14324 EXPRESSION TAG SEQADV 5JV1 ARG F -8 UNP P14324 EXPRESSION TAG SEQADV 5JV1 GLU F -7 UNP P14324 EXPRESSION TAG SEQADV 5JV1 ASN F -6 UNP P14324 EXPRESSION TAG SEQADV 5JV1 LEU F -5 UNP P14324 EXPRESSION TAG SEQADV 5JV1 TYR F -4 UNP P14324 EXPRESSION TAG SEQADV 5JV1 PHE F -3 UNP P14324 EXPRESSION TAG SEQADV 5JV1 GLN F -2 UNP P14324 EXPRESSION TAG SEQADV 5JV1 GLY F -1 UNP P14324 EXPRESSION TAG SEQADV 5JV1 HIS F 0 UNP P14324 EXPRESSION TAG SEQRES 1 F 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 F 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 F 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 F 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 F 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 F 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 F 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 F 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 F 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 F 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 F 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 F 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 F 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 F 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 F 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 F 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 F 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 F 375 LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 F 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 F 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 F 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 F 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 F 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 F 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 F 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 F 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 F 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 F 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 F 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET SO4 F 401 5 HET SO4 F 402 5 HET YL6 F 403 31 HET YL6 F 404 31 HETNAM SO4 SULFATE ION HETNAM YL6 [(1R)-1-{[6-(3-CHLORO-4-METHYLPHENYL)THIENO[2,3- HETNAM 2 YL6 D]PYRIMIDIN-4-YL]AMINO}-2-(3-FLUOROPHENYL) HETNAM 3 YL6 ETHYL]PHOSPHONIC ACID FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 YL6 2(C21 H18 CL F N3 O3 P S) FORMUL 6 HOH *71(H2 O) HELIX 1 AA1 GLU F 13 THR F 29 1 17 HELIX 2 AA2 ILE F 38 ILE F 54 1 17 HELIX 3 AA3 TYR F 58 VAL F 72 1 15 HELIX 4 AA4 GLU F 73 GLN F 77 5 5 HELIX 5 AA5 ASP F 78 ASP F 107 1 30 HELIX 6 AA6 TRP F 118 LYS F 121 5 4 HELIX 7 AA7 VAL F 124 LEU F 126 5 3 HELIX 8 AA8 ASP F 127 ARG F 148 1 22 HELIX 9 AA9 TYR F 152 ALA F 178 1 27 HELIX 10 AB1 ASP F 184 PHE F 188 5 5 HELIX 11 AB2 THR F 189 THR F 201 1 13 HELIX 12 AB3 THR F 201 PHE F 206 1 6 HELIX 13 AB4 PHE F 206 ALA F 217 1 12 HELIX 14 AB5 GLY F 221 GLY F 250 1 30 HELIX 15 AB6 ASP F 251 GLY F 256 1 6 HELIX 16 AB7 SER F 268 ALA F 278 1 11 HELIX 17 AB8 THR F 279 TYR F 290 1 12 HELIX 18 AB9 ALA F 295 LEU F 308 1 14 HELIX 19 AC1 ASP F 309 ALA F 333 1 25 HELIX 20 AC2 PRO F 337 TYR F 349 1 13 SHEET 1 AA1 2 THR F 111 ARG F 112 0 SHEET 2 AA1 2 GLN F 115 ILE F 116 -1 O GLN F 115 N ARG F 112 CISPEP 1 ALA F 334 PRO F 335 0 5.11 SITE 1 AC1 7 HIS F 35 PRO F 36 GLU F 37 ILE F 38 SITE 2 AC1 7 SER F 195 LYS F 198 TYR F 199 SITE 1 AC2 6 GLY F 56 LYS F 57 GLN F 96 ARG F 113 SITE 2 AC2 6 HOH F 503 HOH F 507 SITE 1 AC3 10 LYS F 57 ASN F 59 ARG F 60 SER F 205 SITE 2 AC3 10 PHE F 206 PHE F 239 GLN F 242 ASP F 243 SITE 3 AC3 10 LEU F 344 ILE F 348 SITE 1 AC4 10 THR F 111 GLY F 114 GLN F 115 GLU F 319 SITE 2 AC4 10 TYR F 322 MET F 326 ALA F 345 ARG F 346 SITE 3 AC4 10 TYR F 349 LYS F 350 CRYST1 111.050 111.050 76.200 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009005 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009005 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013123 0.00000