HEADER CELL ADHESION 13-MAY-16 5JXB TITLE PSD-95 EXTENDED PDZ3 IN COMPLEX WITH SYNGAP PBM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISKS LARGE HOMOLOG 4,SYNGAP; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: POSTSYNAPTIC DENSITY PROTEIN 95,PSD-95,SYNAPSE-ASSOCIATED COMPND 5 PROTEIN 90,SAP90; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE FUSION PROTEIN OF PSD-95 (PDZ3 RESIDUES 306-410), COMPND 8 LINKER (GSGS), AND SYNGAP (RESIDUES 415-426) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 10090; SOURCE 5 GENE: DLG4, PSD95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PSD-95, PDZ, SYNGAP, EXTENSION, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHANG,M.ZHANG REVDAT 2 08-NOV-23 5JXB 1 REMARK REVDAT 1 28-SEP-16 5JXB 0 JRNL AUTH M.ZENG,Y.SHANG,Y.ARAKI,T.GUO,R.L.HUGANIR,M.ZHANG JRNL TITL PHASE TRANSITION IN POSTSYNAPTIC DENSITIES UNDERLIES JRNL TITL 2 FORMATION OF SYNAPTIC COMPLEXES AND SYNAPTIC PLASTICITY. JRNL REF CELL V. 166 1163 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 27565345 JRNL DOI 10.1016/J.CELL.2016.07.008 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 6641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.9457 - 3.6579 0.94 3206 171 0.2133 0.2620 REMARK 3 2 3.6579 - 2.9052 0.95 3116 145 0.2958 0.3490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 1809 REMARK 3 ANGLE : 1.867 2446 REMARK 3 CHIRALITY : 0.091 269 REMARK 3 PLANARITY : 0.012 328 REMARK 3 DIHEDRAL : 28.202 650 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3898 -23.8972 8.5035 REMARK 3 T TENSOR REMARK 3 T11: 0.9283 T22: 0.8383 REMARK 3 T33: 0.3097 T12: -0.0786 REMARK 3 T13: 0.0668 T23: 0.2280 REMARK 3 L TENSOR REMARK 3 L11: 2.0870 L22: 3.6081 REMARK 3 L33: 9.1703 L12: -1.6443 REMARK 3 L13: -0.3179 L23: -2.2462 REMARK 3 S TENSOR REMARK 3 S11: -0.1274 S12: 0.4615 S13: -0.0347 REMARK 3 S21: -0.6973 S22: -0.0470 S23: 0.0070 REMARK 3 S31: 1.0748 S32: -0.8210 S33: 0.2364 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 315 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0430 -33.4628 13.3843 REMARK 3 T TENSOR REMARK 3 T11: 1.5758 T22: 1.2052 REMARK 3 T33: 0.4108 T12: -0.6134 REMARK 3 T13: 0.1024 T23: -0.0712 REMARK 3 L TENSOR REMARK 3 L11: 0.2604 L22: 0.1686 REMARK 3 L33: 0.3323 L12: -0.1121 REMARK 3 L13: 0.2215 L23: 0.0362 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: 0.3809 S13: -0.1340 REMARK 3 S21: -0.1866 S22: -0.1821 S23: 0.0137 REMARK 3 S31: 0.4920 S32: -0.0068 S33: 0.1109 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 326 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4709 -30.7090 16.3647 REMARK 3 T TENSOR REMARK 3 T11: 1.3279 T22: 0.9815 REMARK 3 T33: 0.1759 T12: -0.2334 REMARK 3 T13: 0.1409 T23: -0.0532 REMARK 3 L TENSOR REMARK 3 L11: 3.9296 L22: 4.5412 REMARK 3 L33: 2.9927 L12: 0.1134 REMARK 3 L13: -1.4116 L23: 2.1037 REMARK 3 S TENSOR REMARK 3 S11: -0.2235 S12: 0.4890 S13: -0.5374 REMARK 3 S21: -0.0349 S22: -0.1406 S23: 0.0112 REMARK 3 S31: 1.0614 S32: -0.6373 S33: 0.3763 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1309 -24.3132 21.2068 REMARK 3 T TENSOR REMARK 3 T11: 0.8528 T22: 0.8085 REMARK 3 T33: 0.1340 T12: -0.0501 REMARK 3 T13: 0.0909 T23: -0.0508 REMARK 3 L TENSOR REMARK 3 L11: 2.5341 L22: 3.3151 REMARK 3 L33: 4.6567 L12: -0.0472 REMARK 3 L13: -0.0287 L23: -2.5671 REMARK 3 S TENSOR REMARK 3 S11: 0.1031 S12: 0.3081 S13: 0.0183 REMARK 3 S21: -0.0299 S22: -0.1613 S23: 0.0005 REMARK 3 S31: -0.0267 S32: -0.9468 S33: 0.0789 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 416 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4682 -31.7366 27.4143 REMARK 3 T TENSOR REMARK 3 T11: 1.1675 T22: 0.7932 REMARK 3 T33: 0.7152 T12: -0.3790 REMARK 3 T13: 0.5222 T23: -0.2514 REMARK 3 L TENSOR REMARK 3 L11: 3.1978 L22: 3.3535 REMARK 3 L33: 2.0110 L12: 1.8646 REMARK 3 L13: -0.0178 L23: -0.5520 REMARK 3 S TENSOR REMARK 3 S11: -0.4265 S12: 0.6789 S13: -0.4437 REMARK 3 S21: -0.3541 S22: 0.3571 S23: -0.0053 REMARK 3 S31: 0.5856 S32: 0.0673 S33: 0.0652 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 304 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7021 -4.6534 -19.7599 REMARK 3 T TENSOR REMARK 3 T11: 1.3543 T22: 1.0717 REMARK 3 T33: 0.2207 T12: 0.2197 REMARK 3 T13: -0.0642 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 3.8143 L22: 5.8911 REMARK 3 L33: 4.1363 L12: -3.0175 REMARK 3 L13: -3.7380 L23: 4.2383 REMARK 3 S TENSOR REMARK 3 S11: -0.4270 S12: 0.0258 S13: 0.1473 REMARK 3 S21: 0.5079 S22: 0.4337 S23: -0.0840 REMARK 3 S31: 0.1668 S32: 0.7051 S33: -0.0213 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 315 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1463 -13.6862 -11.2193 REMARK 3 T TENSOR REMARK 3 T11: 1.3746 T22: 0.8871 REMARK 3 T33: 0.2138 T12: 0.4932 REMARK 3 T13: 0.0048 T23: 0.0489 REMARK 3 L TENSOR REMARK 3 L11: 3.0146 L22: 1.3005 REMARK 3 L33: 7.2782 L12: 0.1128 REMARK 3 L13: 0.0571 L23: -0.3464 REMARK 3 S TENSOR REMARK 3 S11: 0.1827 S12: -0.1324 S13: -0.2713 REMARK 3 S21: -0.3910 S22: -0.1870 S23: -0.2358 REMARK 3 S31: 0.7502 S32: 0.6882 S33: 0.0431 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 343 THROUGH 368 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3760 -10.9550 -15.7386 REMARK 3 T TENSOR REMARK 3 T11: 1.2937 T22: 0.7548 REMARK 3 T33: 0.1190 T12: -0.0091 REMARK 3 T13: -0.0366 T23: 0.1222 REMARK 3 L TENSOR REMARK 3 L11: 2.0093 L22: 0.5131 REMARK 3 L33: 3.5080 L12: -0.0305 REMARK 3 L13: 0.3886 L23: 0.6615 REMARK 3 S TENSOR REMARK 3 S11: 0.1401 S12: 0.0814 S13: -0.0360 REMARK 3 S21: -0.2086 S22: 0.0713 S23: 0.0353 REMARK 3 S31: 0.1603 S32: 0.5366 S33: 0.0054 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 369 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3830 -11.1031 -5.2878 REMARK 3 T TENSOR REMARK 3 T11: 1.3654 T22: 0.6115 REMARK 3 T33: 0.2382 T12: 0.1612 REMARK 3 T13: 0.0845 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 1.1992 L22: 0.5145 REMARK 3 L33: 3.9544 L12: -0.0813 REMARK 3 L13: 0.7449 L23: -0.9331 REMARK 3 S TENSOR REMARK 3 S11: -0.1703 S12: -0.0051 S13: -0.1836 REMARK 3 S21: 0.0741 S22: -0.1330 S23: -0.2681 REMARK 3 S31: 0.9683 S32: 0.4832 S33: 0.1034 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 415 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5111 -15.8960 -1.6605 REMARK 3 T TENSOR REMARK 3 T11: 1.0747 T22: 1.1725 REMARK 3 T33: 0.2988 T12: 0.2456 REMARK 3 T13: 0.0347 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.5154 L22: 0.9826 REMARK 3 L33: 3.7205 L12: 0.7123 REMARK 3 L13: 1.3849 L23: 1.9129 REMARK 3 S TENSOR REMARK 3 S11: -0.1989 S12: 0.4326 S13: 0.1652 REMARK 3 S21: -0.8490 S22: 0.2494 S23: -0.0618 REMARK 3 S31: -0.4771 S32: 0.2843 S33: -0.0593 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6680 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1BE9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES SODIUM PH 7.5, 10% V/V 2 REMARK 280 -PROPANOL, 20% W/V POLYETHYLENE GLYCOL 4000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.89550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.89550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.14300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.54700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.14300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.54700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.89550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.14300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.54700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.89550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.14300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.54700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 304 REMARK 465 GLY A 411 REMARK 465 SER A 412 REMARK 465 GLY A 413 REMARK 465 SER A 414 REMARK 465 GLY A 415 REMARK 465 GLY C 411 REMARK 465 SER C 412 REMARK 465 GLY C 413 REMARK 465 SER C 414 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 ASP A 329 CG OD1 OD2 REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 LEU A 346 CG CD1 CD2 REMARK 470 LYS A 352 CG CD CE NZ REMARK 470 ARG A 396 NE CZ NH1 NH2 REMARK 470 ARG A 425 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 304 CG CD OE1 OE2 REMARK 470 ASP C 329 CG OD1 OD2 REMARK 470 GLU C 331 CG CD OE1 OE2 REMARK 470 LEU C 346 CG CD1 CD2 REMARK 470 LYS C 352 CG CD CE NZ REMARK 470 LYS C 377 CG CD CE NZ REMARK 470 ASN C 378 CG OD1 ND2 REMARK 470 ARG C 396 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 410 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 315 O LYS C 377 1.73 REMARK 500 O ILE C 374 N ASN C 378 1.82 REMARK 500 NH1 ARG A 309 OD1 ASP A 354 2.07 REMARK 500 CB ASN C 323 O THR C 424 2.08 REMARK 500 O ALA A 344 N GLY A 348 2.12 REMARK 500 NH2 ARG C 351 N ASP C 354 2.13 REMARK 500 NE2 HIS A 369 OG1 THR A 424 2.13 REMARK 500 NH1 ARG C 351 CA ASP C 354 2.13 REMARK 500 C ARG A 306 CE MET C 409 2.15 REMARK 500 OG SER C 358 O HOH C 501 2.16 REMARK 500 NH2 ARG A 309 O GLU A 349 2.18 REMARK 500 N GLY C 415 O HOH C 502 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG C 405 CZ ARG C 405 NH2 -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 376 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 THR A 382 CA - CB - CG2 ANGL. DEV. = -12.2 DEGREES REMARK 500 LEU C 320 CA - CB - CG ANGL. DEV. = 29.3 DEGREES REMARK 500 ARG C 405 CG - CD - NE ANGL. DEV. = 22.0 DEGREES REMARK 500 ARG C 405 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET C 409 CG - SD - CE ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 329 -75.92 -137.02 REMARK 500 PRO A 343 41.35 -70.60 REMARK 500 ALA A 344 -65.78 -135.52 REMARK 500 ARG A 396 0.43 -61.32 REMARK 500 SER C 317 -128.38 53.59 REMARK 500 SER C 336 -68.74 -103.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP C 354 GLN C 355 148.43 REMARK 500 GLY C 380 GLN C 381 -93.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 5JXB A 306 410 UNP P78352 DLG4_HUMAN 309 413 DBREF 5JXB A 415 426 PDB 5JXB 5JXB 415 426 DBREF 5JXB C 306 410 UNP P78352 DLG4_HUMAN 309 413 DBREF 5JXB C 415 426 PDB 5JXB 5JXB 415 426 SEQADV 5JXB GLU A 304 UNP P78352 EXPRESSION TAG SEQADV 5JXB PHE A 305 UNP P78352 EXPRESSION TAG SEQADV 5JXB GLY A 411 UNP P78352 LINKER SEQADV 5JXB SER A 412 UNP P78352 LINKER SEQADV 5JXB GLY A 413 UNP P78352 LINKER SEQADV 5JXB SER A 414 UNP P78352 LINKER SEQADV 5JXB GLU C 304 UNP P78352 EXPRESSION TAG SEQADV 5JXB PHE C 305 UNP P78352 EXPRESSION TAG SEQADV 5JXB GLY C 411 UNP P78352 LINKER SEQADV 5JXB SER C 412 UNP P78352 LINKER SEQADV 5JXB GLY C 413 UNP P78352 LINKER SEQADV 5JXB SER C 414 UNP P78352 LINKER SEQRES 1 A 123 GLU PHE ARG GLU PRO ARG ARG ILE VAL ILE HIS ARG GLY SEQRES 2 A 123 SER THR GLY LEU GLY PHE ASN ILE VAL GLY GLY GLU ASP SEQRES 3 A 123 GLY GLU GLY ILE PHE ILE SER PHE ILE LEU ALA GLY GLY SEQRES 4 A 123 PRO ALA ASP LEU SER GLY GLU LEU ARG LYS GLY ASP GLN SEQRES 5 A 123 ILE LEU SER VAL ASN GLY VAL ASP LEU ARG ASN ALA SER SEQRES 6 A 123 HIS GLU GLN ALA ALA ILE ALA LEU LYS ASN ALA GLY GLN SEQRES 7 A 123 THR VAL THR ILE ILE ALA GLN TYR LYS PRO GLU GLU TYR SEQRES 8 A 123 SER ARG PHE GLU ALA LYS ILE HIS ASP LEU ARG GLU GLN SEQRES 9 A 123 LEU MET ASN GLY SER GLY SER GLY SER PHE PRO PRO TRP SEQRES 10 A 123 VAL GLN GLN THR ARG VAL SEQRES 1 C 123 GLU PHE ARG GLU PRO ARG ARG ILE VAL ILE HIS ARG GLY SEQRES 2 C 123 SER THR GLY LEU GLY PHE ASN ILE VAL GLY GLY GLU ASP SEQRES 3 C 123 GLY GLU GLY ILE PHE ILE SER PHE ILE LEU ALA GLY GLY SEQRES 4 C 123 PRO ALA ASP LEU SER GLY GLU LEU ARG LYS GLY ASP GLN SEQRES 5 C 123 ILE LEU SER VAL ASN GLY VAL ASP LEU ARG ASN ALA SER SEQRES 6 C 123 HIS GLU GLN ALA ALA ILE ALA LEU LYS ASN ALA GLY GLN SEQRES 7 C 123 THR VAL THR ILE ILE ALA GLN TYR LYS PRO GLU GLU TYR SEQRES 8 C 123 SER ARG PHE GLU ALA LYS ILE HIS ASP LEU ARG GLU GLN SEQRES 9 C 123 LEU MET ASN GLY SER GLY SER GLY SER PHE PRO PRO TRP SEQRES 10 C 123 VAL GLN GLN THR ARG VAL FORMUL 3 HOH *4(H2 O) HELIX 1 AA1 SER A 368 ALA A 379 1 12 HELIX 2 AA2 LYS A 390 MET A 409 1 20 HELIX 3 AA3 GLU C 328 GLU C 331 5 4 HELIX 4 AA4 GLY C 342 GLY C 348 1 7 HELIX 5 AA5 SER C 368 ALA C 379 1 12 HELIX 6 AA6 LYS C 390 MET C 409 1 20 SHEET 1 AA1 4 ARG A 309 HIS A 314 0 SHEET 2 AA1 4 THR A 382 TYR A 389 -1 O ILE A 385 N ILE A 311 SHEET 3 AA1 4 ASP A 354 VAL A 359 -1 N GLN A 355 O GLN A 388 SHEET 4 AA1 4 VAL A 362 ASP A 363 -1 O VAL A 362 N VAL A 359 SHEET 1 AA2 3 PHE A 334 ILE A 338 0 SHEET 2 AA2 3 PHE A 322 VAL A 325 -1 N VAL A 325 O PHE A 334 SHEET 3 AA2 3 GLN A 423 ARG A 425 -1 O THR A 424 N ILE A 324 SHEET 1 AA3 4 ARG C 309 HIS C 314 0 SHEET 2 AA3 4 THR C 382 TYR C 389 -1 O ILE C 385 N ILE C 311 SHEET 3 AA3 4 ASP C 354 VAL C 359 -1 N GLN C 355 O GLN C 388 SHEET 4 AA3 4 VAL C 362 ASP C 363 -1 O VAL C 362 N VAL C 359 SHEET 1 AA4 3 ILE C 333 ILE C 335 0 SHEET 2 AA4 3 ASN C 323 GLY C 326 -1 N VAL C 325 O PHE C 334 SHEET 3 AA4 3 THR C 424 ARG C 425 -1 O THR C 424 N ILE C 324 LINK O ARG A 306 CE MET C 409 1555 1555 1.16 CRYST1 70.286 71.094 115.791 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014228 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008636 0.00000