HEADER OXIDOREDUCTASE 13-MAY-16 5JY5 TITLE CRYSTAL STRUCTURE OF THIOREDOXIN 1 FROM CRYPTOCOCCUS NEOFORMANS AT 1.8 TITLE 2 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOCOCCUS NEOFORMANS VAR. GRUBII SEROTYPE A; SOURCE 3 ORGANISM_TAXID: 235443; SOURCE 4 STRAIN: H99 / ATCC 208821 / CBS 10515 / FGSC 9487; SOURCE 5 GENE: CNAG_02801; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21A KEYWDS THIOREDOXIN 1 CRYPTOCOCCUS NEOFORMANS X-RAY CRYSTALLOGRAPHY, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.P.BRAVO-CHAUCANES,A.K.R.ABADIO,E.S.KIOSHIMA,M.S.S.FELIPE, AUTHOR 2 J.A.R.G.BARBOSA REVDAT 4 27-SEP-23 5JY5 1 REMARK REVDAT 3 08-JAN-20 5JY5 1 REMARK REVDAT 2 17-APR-19 5JY5 1 REMARK REVDAT 1 07-JUN-17 5JY5 0 JRNL AUTH C.P.BRAVO-CHAUCANES,A.K.R.ABADIO,E.S.KIOSHIMA,M.S.S.FELIPE, JRNL AUTH 2 J.A.R.G.BARBOSA JRNL TITL CRYSTAL STRUCTURE OF THIOREDOXIN 1 FROM CRYPTOCOCCUS JRNL TITL 2 NEOFORMANS AT 1.8 ANGSTROMS RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2160 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.1630 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.1840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1632 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 347 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : 2.91000 REMARK 3 B12 (A**2) : -0.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.413 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1774 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1737 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2421 ; 2.189 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4045 ; 1.139 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 231 ; 5.607 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;29.487 ;25.938 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 315 ;14.354 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 282 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1910 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 350 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 863 ; 1.708 ; 2.401 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 861 ; 1.675 ; 2.393 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1080 ; 2.324 ; 3.583 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1081 ; 2.323 ; 3.586 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 908 ; 3.137 ; 2.796 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 900 ; 3.081 ; 2.774 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1318 ; 4.659 ; 3.998 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2387 ; 8.520 ;23.621 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2168 ; 8.275 ;21.298 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): -35.1870 36.1660 12.9180 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.1133 REMARK 3 T33: 0.0257 T12: -0.0263 REMARK 3 T13: -0.0122 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.5252 L22: 0.3282 REMARK 3 L33: 0.4280 L12: 0.2571 REMARK 3 L13: -0.0183 L23: 0.1823 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.0367 S13: -0.0083 REMARK 3 S21: -0.0075 S22: 0.0499 S23: 0.0304 REMARK 3 S31: -0.0141 S32: 0.0427 S33: -0.0278 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 105 REMARK 3 ORIGIN FOR THE GROUP (A): -28.4150 22.4970 36.8780 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.1019 REMARK 3 T33: 0.0322 T12: 0.0046 REMARK 3 T13: -0.0438 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.3204 L22: 0.8481 REMARK 3 L33: 1.2430 L12: 0.2757 REMARK 3 L13: 0.5109 L23: 0.6544 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: 0.0068 S13: -0.0133 REMARK 3 S21: 0.1110 S22: 0.0085 S23: -0.0541 REMARK 3 S31: 0.2089 S32: 0.0981 S33: -0.1189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2398 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO HKL-2000_704Y REMARK 200 DATA SCALING SOFTWARE : SCALEPACK HKL-2000_704Y REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31224 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 37.10 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 52.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 34.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 7.0.004 REMARK 200 STARTING MODEL: 2J23 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.02 M TRIS REMARK 280 HYDROCHLORIDE, PH 7.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.58767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.17533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.58767 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.17533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.58767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 61.17533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 30.58767 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 61.17533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 30.58767 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 312 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 MET B 1 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 360 O HOH A 376 1.25 REMARK 500 O HOH B 307 O HOH B 371 1.58 REMARK 500 O HOH A 304 O HOH A 364 1.91 REMARK 500 O HOH B 307 O HOH B 375 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 465 O HOH A 476 4565 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 61 CD GLU A 61 OE2 0.070 REMARK 500 GLU B 61 CD GLU B 61 OE1 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 9 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 MET A 35 CG - SD - CE ANGL. DEV. = 14.9 DEGREES REMARK 500 ASP B 9 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LYS B 65 CD - CE - NZ ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 499 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 500 DISTANCE = 6.43 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 DBREF 5JY5 A 1 104 UNP J9VKF2 J9VKF2_CRYNH 1 104 DBREF 5JY5 B 1 104 UNP J9VKF2 J9VKF2_CRYNH 1 104 SEQADV 5JY5 HIS A 105 UNP J9VKF2 EXPRESSION TAG SEQADV 5JY5 HIS A 106 UNP J9VKF2 EXPRESSION TAG SEQADV 5JY5 HIS A 107 UNP J9VKF2 EXPRESSION TAG SEQADV 5JY5 HIS A 108 UNP J9VKF2 EXPRESSION TAG SEQADV 5JY5 HIS A 109 UNP J9VKF2 EXPRESSION TAG SEQADV 5JY5 HIS A 110 UNP J9VKF2 EXPRESSION TAG SEQADV 5JY5 HIS B 105 UNP J9VKF2 EXPRESSION TAG SEQADV 5JY5 HIS B 106 UNP J9VKF2 EXPRESSION TAG SEQADV 5JY5 HIS B 107 UNP J9VKF2 EXPRESSION TAG SEQADV 5JY5 HIS B 108 UNP J9VKF2 EXPRESSION TAG SEQADV 5JY5 HIS B 109 UNP J9VKF2 EXPRESSION TAG SEQADV 5JY5 HIS B 110 UNP J9VKF2 EXPRESSION TAG SEQRES 1 A 110 MET VAL LYS ALA ILE GLU SER TYR ASP GLU TRP LYS THR SEQRES 2 A 110 LEU THR SER GLY SER ASP VAL VAL VAL VAL ASP TYR TRP SEQRES 3 A 110 ALA THR TRP CYS GLY PRO CYS LYS MET ILE SER PRO HIS SEQRES 4 A 110 PHE ALA LYS LEU GLU GLY LYS PHE PRO ASN VAL LYS PHE SEQRES 5 A 110 ALA LYS VAL ASP VAL GLU GLU GLN GLU ASP ILE ALA LYS SEQRES 6 A 110 GLU ALA GLN ILE LYS ALA MET PRO THR PHE VAL ALA TYR SEQRES 7 A 110 LYS ASP GLY LYS VAL ILE GLU THR VAL THR GLY ALA VAL SEQRES 8 A 110 PRO ALA LYS ILE ASN ALA LEU LEU ASP LYS VAL ALA ALA SEQRES 9 A 110 HIS HIS HIS HIS HIS HIS SEQRES 1 B 110 MET VAL LYS ALA ILE GLU SER TYR ASP GLU TRP LYS THR SEQRES 2 B 110 LEU THR SER GLY SER ASP VAL VAL VAL VAL ASP TYR TRP SEQRES 3 B 110 ALA THR TRP CYS GLY PRO CYS LYS MET ILE SER PRO HIS SEQRES 4 B 110 PHE ALA LYS LEU GLU GLY LYS PHE PRO ASN VAL LYS PHE SEQRES 5 B 110 ALA LYS VAL ASP VAL GLU GLU GLN GLU ASP ILE ALA LYS SEQRES 6 B 110 GLU ALA GLN ILE LYS ALA MET PRO THR PHE VAL ALA TYR SEQRES 7 B 110 LYS ASP GLY LYS VAL ILE GLU THR VAL THR GLY ALA VAL SEQRES 8 B 110 PRO ALA LYS ILE ASN ALA LEU LEU ASP LYS VAL ALA ALA SEQRES 9 B 110 HIS HIS HIS HIS HIS HIS HET GOL A 201 6 HET GOL A 202 6 HET SO4 A 203 5 HET GOL B 201 6 HET TRS B 202 8 HET SO4 B 203 5 HET SO4 B 204 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 SO4 3(O4 S 2-) FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 10 HOH *347(H2 O) HELIX 1 AA1 SER A 7 GLY A 17 1 11 HELIX 2 AA2 PRO A 32 PHE A 47 1 16 HELIX 3 AA3 GLN A 60 GLN A 68 1 9 HELIX 4 AA4 VAL A 91 HIS A 106 1 16 HELIX 5 AA5 SER B 7 GLY B 17 1 11 HELIX 6 AA6 CYS B 30 PHE B 47 1 18 HELIX 7 AA7 GLN B 60 ALA B 67 1 8 HELIX 8 AA8 VAL B 91 HIS B 106 1 16 SHEET 1 AA1 5 LYS A 3 ALA A 4 0 SHEET 2 AA1 5 LYS A 51 ASP A 56 1 O LYS A 54 N LYS A 3 SHEET 3 AA1 5 VAL A 21 TRP A 26 1 N VAL A 22 O LYS A 51 SHEET 4 AA1 5 THR A 74 LYS A 79 -1 O THR A 74 N TYR A 25 SHEET 5 AA1 5 LYS A 82 THR A 88 -1 O VAL A 87 N PHE A 75 SHEET 1 AA2 5 LYS B 3 ALA B 4 0 SHEET 2 AA2 5 LYS B 51 ASP B 56 1 O LYS B 54 N LYS B 3 SHEET 3 AA2 5 VAL B 21 TRP B 26 1 N ASP B 24 O VAL B 55 SHEET 4 AA2 5 THR B 74 LYS B 79 -1 O THR B 74 N TYR B 25 SHEET 5 AA2 5 LYS B 82 THR B 88 -1 O VAL B 87 N PHE B 75 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.10 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.36 CISPEP 1 MET A 72 PRO A 73 0 0.21 CISPEP 2 MET A 72 PRO A 73 0 0.15 CISPEP 3 MET B 72 PRO B 73 0 -9.26 CISPEP 4 MET B 72 PRO B 73 0 -11.32 SITE 1 AC1 10 VAL A 2 LYS A 3 LYS A 42 GLU A 44 SITE 2 AC1 10 SO4 A 203 HOH A 301 HOH A 307 HOH A 315 SITE 3 AC1 10 HOH A 321 HOH B 304 SITE 1 AC2 8 TRP A 26 CYS A 33 SER A 37 LYS A 54 SITE 2 AC2 8 HOH A 302 HOH A 310 HOH A 357 HOH A 370 SITE 1 AC3 7 HIS A 39 LYS A 42 ASN A 96 GOL A 201 SITE 2 AC3 7 HOH A 303 HOH A 382 HOH B 304 SITE 1 AC4 4 VAL B 83 GLU B 85 THR B 86 HOH B 395 SITE 1 AC5 8 GLY A 89 ALA A 90 VAL A 91 LYS A 94 SITE 2 AC5 8 HOH A 328 LYS B 12 LYS B 70 HOH B 341 SITE 1 AC6 3 LYS A 79 LYS B 34 HOH B 302 SITE 1 AC7 2 HIS B 39 LYS B 42 CRYST1 110.706 110.706 91.763 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009033 0.005215 0.000000 0.00000 SCALE2 0.000000 0.010430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010898 0.00000