HEADER HYDROLASE/HYDROLASE INHIBITOR 15-MAY-16 5JYY TITLE STRUCTURE-BASED TETRAVALENT ZANAMIVIR WITH POTENT INHIBITORY ACTIVITY TITLE 2 AGAINST DRUG-RESISTANT INFLUENZA VIRUSES COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 78-465; COMPND 5 EC: 3.2.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: A/SHANGHAI/01/2013(H7N9); SOURCE 5 GENE: NA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS NEURAMINIDASE INHIBITOR, TETRAVALENT ZANAMIVIR, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.FU,Y.WU,Y.BI,S.ZHANG,X.LV,J.QI,Y.LI,X.LU,J.YAN,G.F.GAO,X.LI REVDAT 8 06-NOV-24 5JYY 1 REMARK REVDAT 7 08-NOV-23 5JYY 1 HETSYN LINK REVDAT 6 29-JUL-20 5JYY 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 24-OCT-18 5JYY 1 SOURCE REVDAT 4 16-AUG-17 5JYY 1 JRNL REMARK REVDAT 3 27-JUL-16 5JYY 1 JRNL REVDAT 2 06-JUL-16 5JYY 1 JRNL REVDAT 1 29-JUN-16 5JYY 0 SPRSDE 29-JUN-16 5JYY 5E6L JRNL AUTH L.FU,Y.BI,Y.WU,S.ZHANG,J.QI,Y.LI,X.LU,Z.ZHANG,X.LV,J.YAN, JRNL AUTH 2 G.F.GAO,X.LI JRNL TITL STRUCTURE-BASED TETRAVALENT ZANAMIVIR WITH POTENT INHIBITORY JRNL TITL 2 ACTIVITY AGAINST DRUG-RESISTANT INFLUENZA VIRUSES JRNL REF J.MED.CHEM. V. 59 6303 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27341624 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00537 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.WU,Y.BI,C.J.VAVRICKA,X.SUN,Y.ZHANG,F.GAO,M.ZHAO,H.XIAO, REMARK 1 AUTH 2 C.QIN,J.HE,W.LIU,J.YAN,J.QI,G.F.GAO REMARK 1 TITL CHARACTERIZATION OF TWO DISTINCT NEURAMINIDASES FROM REMARK 1 TITL 2 AVIAN-ORIGIN HUMAN-INFECTING H7N9 INFLUENZA VIRUSES REMARK 1 REF CELL RES. V. 23 1347 2013 REMARK 1 REFN ISSN 1001-0602 REMARK 1 PMID 24165891 REMARK 1 DOI 10.1038/CR.2013.144 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3214 - 4.6669 1.00 2722 133 0.1454 0.1522 REMARK 3 2 4.6669 - 3.7055 1.00 2565 150 0.1156 0.1301 REMARK 3 3 3.7055 - 3.2375 1.00 2540 138 0.1421 0.1604 REMARK 3 4 3.2375 - 2.9417 1.00 2531 122 0.1576 0.1882 REMARK 3 5 2.9417 - 2.7309 1.00 2485 164 0.1678 0.1840 REMARK 3 6 2.7309 - 2.5699 1.00 2497 122 0.1717 0.2089 REMARK 3 7 2.5699 - 2.4413 1.00 2494 138 0.1722 0.2106 REMARK 3 8 2.4413 - 2.3350 1.00 2499 136 0.1740 0.2016 REMARK 3 9 2.3350 - 2.2451 1.00 2493 114 0.1662 0.2246 REMARK 3 10 2.2451 - 2.1677 1.00 2472 147 0.1768 0.2057 REMARK 3 11 2.1677 - 2.0999 1.00 2507 119 0.1850 0.2365 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3349 REMARK 3 ANGLE : 1.034 4572 REMARK 3 CHIRALITY : 0.045 514 REMARK 3 PLANARITY : 0.004 577 REMARK 3 DIHEDRAL : 11.956 1240 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 379.9239 160.3875 54.5590 REMARK 3 T TENSOR REMARK 3 T11: 0.2369 T22: 0.2435 REMARK 3 T33: 0.2135 T12: 0.0104 REMARK 3 T13: 0.0020 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.5872 L22: 0.4256 REMARK 3 L33: 0.1987 L12: -0.0239 REMARK 3 L13: -0.0361 L23: 0.0045 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.0612 S13: -0.0794 REMARK 3 S21: -0.0371 S22: 0.0105 S23: -0.0684 REMARK 3 S31: 0.0301 S32: 0.0367 S33: -0.0160 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JYY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29294 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 7NN9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 5%(V/V) 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, 10%(V/V) PEG 10000, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 90.03950 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 90.03950 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 90.03950 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 90.03950 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 90.03950 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 90.03950 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 90.03950 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 90.03950 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 90.03950 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 90.03950 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 90.03950 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 90.03950 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 90.03950 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 90.03950 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 90.03950 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 90.03950 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 90.03950 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 90.03950 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 90.03950 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 90.03950 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 90.03950 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 90.03950 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 90.03950 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 90.03950 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 90.03950 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 90.03950 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 90.03950 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 90.03950 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 90.03950 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 90.03950 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 90.03950 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 90.03950 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 90.03950 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 90.03950 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 90.03950 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 90.03950 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 90.03950 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 90.03950 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 90.03950 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 90.03950 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 90.03950 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 90.03950 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 90.03950 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 90.03950 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 90.03950 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 90.03950 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 90.03950 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 90.03950 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 90.03950 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 90.03950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 720.31600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 360.15800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 180.07900 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 540.23700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 540.23700 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 -180.07900 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 872 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 930 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 964 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ARG A 1 O HOH A 601 1.96 REMARK 500 O HOH A 940 O HOH A 945 2.03 REMARK 500 O HOH A 928 O HOH A 946 2.04 REMARK 500 O HOH A 605 O HOH A 956 2.10 REMARK 500 O HOH A 950 O HOH A 970 2.11 REMARK 500 O HOH A 885 O HOH A 931 2.12 REMARK 500 O HOH A 832 O HOH A 890 2.13 REMARK 500 O HOH A 850 O HOH A 897 2.17 REMARK 500 OE2 GLU A 203 O HOH A 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 83 -1.43 69.07 REMARK 500 ASN A 120 38.90 -156.05 REMARK 500 ASN A 141 76.97 -153.47 REMARK 500 THR A 145 -151.16 -136.46 REMARK 500 LYS A 184 148.06 -171.00 REMARK 500 CYS A 211 -162.56 -116.78 REMARK 500 TRP A 215 -75.10 -86.35 REMARK 500 GLN A 235 -159.90 -158.60 REMARK 500 ASP A 275 55.78 -151.36 REMARK 500 SER A 322 -134.84 -117.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 974 DISTANCE = 6.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 512 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 213 O REMARK 620 2 GLY A 217 O 80.5 REMARK 620 3 ASP A 244 OD2 92.2 86.0 REMARK 620 4 ASN A 266 O 99.0 163.5 110.5 REMARK 620 5 HOH A 711 O 172.8 92.3 86.5 88.2 REMARK 620 6 HOH A 744 O 93.5 87.7 170.7 75.9 87.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MWX RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONFLICT IS DUE TO DIFFERENCE OF STRAIN. DBREF 5JYY A 1 388 UNP R4NFR6 R4NFR6_9INFA 78 465 SEQADV 5JYY LYS A 212 UNP R4NFR6 ARG 289 SEE SEQUENCE DETAILS SEQRES 1 A 388 ARG ASN PHE ASN ASN LEU THR LYS GLY LEU CYS THR ILE SEQRES 2 A 388 ASN SER TRP HIS ILE TYR GLY LYS ASP ASN ALA VAL ARG SEQRES 3 A 388 ILE GLY GLU SER SER ASP VAL LEU VAL THR ARG GLU PRO SEQRES 4 A 388 TYR VAL SER CYS ASP PRO ASP GLU CYS ARG PHE TYR ALA SEQRES 5 A 388 LEU SER GLN GLY THR THR ILE ARG GLY LYS HIS SER ASN SEQRES 6 A 388 GLY THR ILE HIS ASP ARG SER GLN TYR ARG ALA LEU ILE SEQRES 7 A 388 SER TRP PRO LEU SER SER PRO PRO THR VAL TYR ASN SER SEQRES 8 A 388 ARG VAL GLU CYS ILE GLY TRP SER SER THR SER CYS HIS SEQRES 9 A 388 ASP GLY LYS SER ARG MET SER ILE CYS ILE SER GLY PRO SEQRES 10 A 388 ASN ASN ASN ALA SER ALA VAL VAL TRP TYR ASN ARG ARG SEQRES 11 A 388 PRO VAL ALA GLU ILE ASN THR TRP ALA ARG ASN ILE LEU SEQRES 12 A 388 ARG THR GLN GLU SER GLU CYS VAL CYS HIS ASN GLY VAL SEQRES 13 A 388 CYS PRO VAL VAL PHE THR ASP GLY SER ALA THR GLY PRO SEQRES 14 A 388 ALA ASP THR ARG ILE TYR TYR PHE LYS GLU GLY LYS ILE SEQRES 15 A 388 LEU LYS TRP GLU SER LEU THR GLY THR ALA LYS HIS ILE SEQRES 16 A 388 GLU GLU CYS SER CYS TYR GLY GLU ARG THR GLY ILE THR SEQRES 17 A 388 CYS THR CYS LYS ASP ASN TRP GLN GLY SER ASN ARG PRO SEQRES 18 A 388 VAL ILE GLN ILE ASP PRO VAL ALA MET THR HIS THR SER SEQRES 19 A 388 GLN TYR ILE CYS SER PRO VAL LEU THR ASP ASN PRO ARG SEQRES 20 A 388 PRO ASN ASP PRO ASN ILE GLY LYS CYS ASN ASP PRO TYR SEQRES 21 A 388 PRO GLY ASN ASN ASN ASN GLY VAL LYS GLY PHE SER TYR SEQRES 22 A 388 LEU ASP GLY ALA ASN THR TRP LEU GLY ARG THR ILE SER SEQRES 23 A 388 THR ALA SER ARG SER GLY TYR GLU MET LEU LYS VAL PRO SEQRES 24 A 388 ASN ALA LEU THR ASP ASP ARG SER LYS PRO ILE GLN GLY SEQRES 25 A 388 GLN THR ILE VAL LEU ASN ALA ASP TRP SER GLY TYR SER SEQRES 26 A 388 GLY SER PHE MET ASP TYR TRP ALA GLU GLY ASP CYS TYR SEQRES 27 A 388 ARG ALA CYS PHE TYR VAL GLU LEU ILE ARG GLY ARG PRO SEQRES 28 A 388 LYS GLU ASP LYS VAL TRP TRP THR SER ASN SER ILE VAL SEQRES 29 A 388 SER MET CYS SER SER THR GLU PHE LEU GLY GLN TRP ASN SEQRES 30 A 388 TRP PRO ASP GLY ALA LYS ILE GLU TYR PHE LEU HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET MAN B 7 11 HET MAN B 8 11 HET MAN B 9 11 HET NAG A 501 14 HET NAG A 502 14 HET CA A 512 1 HET 6PY A 513 30 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM 6PY 5-ACETAMIDO-2,6-ANHYDRO-4-CARBAMIMIDAMIDO-3,4,5- HETNAM 2 6PY TRIDEOXY-7-O-[(2-METHOXYETHYL)CARBAMOYL]-D-GLYCERO-D- HETNAM 3 6PY GALACTO-NON-2-ENON IC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN 6PY 5-(ACETYLAMINO)-2,6-ANHYDRO-4-CARBAMIMIDAMIDO-3,4,5- HETSYN 2 6PY TRIDEOXY-7-O-[(2-METHOXYETHYL)CARBAMOYL]-D-GLYCERO-D- HETSYN 3 6PY GALACTO-NON-2- ENONIC ACID FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 6(C6 H12 O6) FORMUL 5 CA CA 2+ FORMUL 6 6PY C16 H27 N5 O9 FORMUL 7 HOH *374(H2 O) HELIX 1 AA1 ASN A 23 GLU A 29 1 7 HELIX 2 AA2 GLY A 61 ASN A 65 5 5 HELIX 3 AA3 ASP A 275 ASN A 278 5 4 HELIX 4 AA4 LYS A 383 LEU A 388 5 6 SHEET 1 AA1 2 GLY A 9 LEU A 10 0 SHEET 2 AA1 2 CYS A 337 TYR A 338 1 O TYR A 338 N GLY A 9 SHEET 1 AA2 4 SER A 15 LYS A 21 0 SHEET 2 AA2 4 THR A 359 SER A 369 -1 O SER A 365 N TYR A 19 SHEET 3 AA2 4 CYS A 341 GLY A 349 -1 N VAL A 344 O VAL A 364 SHEET 4 AA2 4 SER A 325 PHE A 328 -1 N GLY A 326 O TYR A 343 SHEET 1 AA3 4 LEU A 34 CYS A 43 0 SHEET 2 AA3 4 CYS A 48 THR A 58 -1 O TYR A 51 N TYR A 40 SHEET 3 AA3 4 ALA A 76 PRO A 81 -1 O ILE A 78 N ALA A 52 SHEET 4 AA3 4 ARG A 92 ILE A 96 -1 O ARG A 92 N SER A 79 SHEET 1 AA4 4 SER A 99 HIS A 104 0 SHEET 2 AA4 4 ARG A 109 SER A 115 -1 O MET A 110 N CYS A 103 SHEET 3 AA4 4 SER A 122 TYR A 127 -1 O TRP A 126 N SER A 111 SHEET 4 AA4 4 ARG A 130 ASN A 136 -1 O ALA A 133 N VAL A 125 SHEET 1 AA5 3 VAL A 156 GLY A 164 0 SHEET 2 AA5 3 ALA A 170 LYS A 178 -1 O ASP A 171 N ASP A 163 SHEET 3 AA5 3 LYS A 181 SER A 187 -1 O LEU A 183 N TYR A 176 SHEET 1 AA6 4 GLU A 196 GLU A 203 0 SHEET 2 AA6 4 GLY A 206 LYS A 212 -1 O THR A 210 N SER A 199 SHEET 3 AA6 4 PRO A 221 ASP A 226 -1 O ILE A 225 N ILE A 207 SHEET 4 AA6 4 THR A 231 TYR A 236 -1 O GLN A 235 N VAL A 222 SHEET 1 AA7 4 SER A 272 TYR A 273 0 SHEET 2 AA7 4 TRP A 280 ARG A 283 -1 O TRP A 280 N TYR A 273 SHEET 3 AA7 4 SER A 291 LYS A 297 -1 O LEU A 296 N LEU A 281 SHEET 4 AA7 4 GLN A 311 TRP A 321 -1 O GLN A 311 N LYS A 297 SSBOND 1 CYS A 11 CYS A 337 1555 1555 2.04 SSBOND 2 CYS A 43 CYS A 48 1555 1555 2.04 SSBOND 3 CYS A 95 CYS A 113 1555 1555 2.04 SSBOND 4 CYS A 103 CYS A 150 1555 1555 2.03 SSBOND 5 CYS A 152 CYS A 157 1555 1555 2.04 SSBOND 6 CYS A 198 CYS A 211 1555 1555 2.05 SSBOND 7 CYS A 200 CYS A 209 1555 1555 2.05 SSBOND 8 CYS A 238 CYS A 256 1555 1555 2.03 SSBOND 9 CYS A 341 CYS A 367 1555 1555 2.04 LINK ND2 ASN A 5 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN A 65 C1 NAG A 502 1555 1555 1.44 LINK ND2 ASN A 120 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.43 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.43 LINK O6 BMA B 3 C1 MAN B 7 1555 1555 1.44 LINK O2 MAN B 4 C1 MAN B 5 1555 1555 1.44 LINK O2 MAN B 5 C1 MAN B 6 1555 1555 1.44 LINK O3 MAN B 7 C1 MAN B 8 1555 1555 1.44 LINK O6 MAN B 7 C1 MAN B 9 1555 1555 1.44 LINK O ASP A 213 CA CA A 512 1555 1555 2.41 LINK O GLY A 217 CA CA A 512 1555 1555 2.40 LINK OD2 ASP A 244 CA CA A 512 1555 1555 2.44 LINK O ASN A 266 CA CA A 512 1555 1555 2.44 LINK CA CA A 512 O HOH A 711 1555 1555 2.47 LINK CA CA A 512 O HOH A 744 1555 1555 2.63 CISPEP 1 ASN A 245 PRO A 246 0 -2.65 CISPEP 2 ARG A 350 PRO A 351 0 4.68 CRYST1 180.079 180.079 180.079 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005553 0.00000