HEADER TRANSFERASE 17-MAY-16 5JZJ TITLE CRYSTAL STRUCTURE OF DCLK1-KD IN COMPLEX WITH AMPPN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE DCLK1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 372-649; COMPND 5 SYNONYM: DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 3A,DOUBLECORTIN-LIKE COMPND 6 AND CAM KINASE-LIKE 1,DOUBLECORTIN-LIKE KINASE 1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCLK1, DCAMKL1, DCDC3A, KIAA0369; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCOLD KEYWDS KINASE, DOUBLECORTIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.PATEL,I.LUCET REVDAT 3 27-SEP-23 5JZJ 1 LINK REVDAT 2 30-AUG-17 5JZJ 1 JRNL REMARK REVDAT 1 24-AUG-16 5JZJ 0 JRNL AUTH O.PATEL,W.DAI,M.MENTZEL,M.D.GRIFFIN,J.SERINDOUX,Y.GAY, JRNL AUTH 2 S.FISCHER,S.STERLE,A.KROPP,C.J.BURNS,M.ERNST,M.BUCHERT, JRNL AUTH 3 I.S.LUCET JRNL TITL BIOCHEMICAL AND STRUCTURAL INSIGHTS INTO DOUBLECORTIN-LIKE JRNL TITL 2 KINASE DOMAIN 1. JRNL REF STRUCTURE V. 24 1550 2016 JRNL REFN ISSN 1878-4186 JRNL PMID 27545623 JRNL DOI 10.1016/J.STR.2016.07.008 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 57807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2932 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.57 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4048 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2109 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3831 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE : 0.2253 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.36 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 217 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4099 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 493 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.24280 REMARK 3 B22 (A**2) : 4.96890 REMARK 3 B33 (A**2) : -1.72610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.63500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.186 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.108 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.103 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.105 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.101 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4281 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5852 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1950 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 94 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 621 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4281 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 582 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5406 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.46 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.61 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221493. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57833 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 56.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.69600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2Y7J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 5000, AMMONIUM SULPHATE, PH REMARK 280 6.5, EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.63500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 353 REMARK 465 HIS A 354 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 GLY A 362 REMARK 465 SER A 363 REMARK 465 GLU A 364 REMARK 465 ASN A 365 REMARK 465 LEU A 366 REMARK 465 TYR A 367 REMARK 465 PHE A 368 REMARK 465 GLN A 369 REMARK 465 GLY A 370 REMARK 465 SER A 371 REMARK 465 GLY A 372 REMARK 465 GLU A 373 REMARK 465 GLY A 591 REMARK 465 ASP A 592 REMARK 465 ASP A 593 REMARK 465 GLN A 594 REMARK 465 ASP A 649 REMARK 465 MET B 353 REMARK 465 HIS B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 GLY B 362 REMARK 465 SER B 363 REMARK 465 GLU B 364 REMARK 465 ASN B 365 REMARK 465 LEU B 366 REMARK 465 TYR B 367 REMARK 465 PHE B 368 REMARK 465 GLN B 369 REMARK 465 GLY B 370 REMARK 465 SER B 371 REMARK 465 GLY B 372 REMARK 465 GLU B 373 REMARK 465 GLU B 374 REMARK 465 VAL B 375 REMARK 465 SER B 376 REMARK 465 GLU B 377 REMARK 465 GLU B 378 REMARK 465 GLY B 379 REMARK 465 PHE B 380 REMARK 465 GLN B 381 REMARK 465 GLY B 589 REMARK 465 SER B 590 REMARK 465 GLY B 591 REMARK 465 ASP B 592 REMARK 465 ASP B 593 REMARK 465 GLN B 594 REMARK 465 ASP B 649 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 374 CG CD OE1 OE2 REMARK 470 GLU A 377 CG CD OE1 OE2 REMARK 470 GLN A 381 CG CD OE1 NE2 REMARK 470 PHE A 401 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 422 CG CD CE NZ REMARK 470 LYS A 425 CG CD CE NZ REMARK 470 LYS A 429 CG CD CE NZ REMARK 470 GLU A 430 CG CD OE1 OE2 REMARK 470 ASN A 481 CG OD1 ND2 REMARK 470 MET A 603 CG SD CE REMARK 470 GLU B 388 CG CD OE1 OE2 REMARK 470 PHE B 401 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 422 CG CD CE NZ REMARK 470 LYS B 425 CG CD CE NZ REMARK 470 LYS B 429 CG CD CE NZ REMARK 470 ARG B 442 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 444 CG CD CE NZ REMARK 470 MET B 455 CG SD CE REMARK 470 ASN B 481 CG OD1 ND2 REMARK 470 LYS B 482 CG CD CE NZ REMARK 470 ARG B 486 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 523 CG CD OE1 NE2 REMARK 470 GLU B 595 CG CD OE1 OE2 REMARK 470 ASP B 599 CG OD1 OD2 REMARK 470 GLU B 622 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 481 -65.78 75.59 REMARK 500 ASP A 511 38.70 -141.79 REMARK 500 ASP A 533 81.39 49.76 REMARK 500 ASN B 481 -67.67 77.56 REMARK 500 ASP B 511 37.39 -143.08 REMARK 500 ASP B 533 81.81 53.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1070 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A1071 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH B1222 DISTANCE = 6.65 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 516 OD1 REMARK 620 2 ASP A 533 OD2 90.5 REMARK 620 3 AN2 A 703 O1B 175.9 93.6 REMARK 620 4 AN2 A 703 O1A 90.1 97.7 89.1 REMARK 620 5 HOH A 871 O 90.3 90.7 89.9 171.6 REMARK 620 6 HOH A 921 O 85.2 174.7 90.7 85.5 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 516 OD1 REMARK 620 2 ASP B 533 OD2 90.4 REMARK 620 3 AN2 B 902 O2A 92.1 94.2 REMARK 620 4 AN2 B 902 O1B 178.2 87.8 87.9 REMARK 620 5 HOH B1100 O 88.6 90.3 175.4 91.5 REMARK 620 6 HOH B1134 O 88.2 176.5 89.0 93.7 86.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AN2 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AN2 B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JZN RELATED DB: PDB DBREF 5JZJ A 372 649 UNP O15075 DCLK1_HUMAN 372 649 DBREF 5JZJ B 372 649 UNP O15075 DCLK1_HUMAN 372 649 SEQADV 5JZJ MET A 353 UNP O15075 INITIATING METHIONINE SEQADV 5JZJ HIS A 354 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS A 355 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS A 356 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS A 357 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS A 358 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS A 359 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS A 360 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS A 361 UNP O15075 EXPRESSION TAG SEQADV 5JZJ GLY A 362 UNP O15075 EXPRESSION TAG SEQADV 5JZJ SER A 363 UNP O15075 EXPRESSION TAG SEQADV 5JZJ GLU A 364 UNP O15075 EXPRESSION TAG SEQADV 5JZJ ASN A 365 UNP O15075 EXPRESSION TAG SEQADV 5JZJ LEU A 366 UNP O15075 EXPRESSION TAG SEQADV 5JZJ TYR A 367 UNP O15075 EXPRESSION TAG SEQADV 5JZJ PHE A 368 UNP O15075 EXPRESSION TAG SEQADV 5JZJ GLN A 369 UNP O15075 EXPRESSION TAG SEQADV 5JZJ GLY A 370 UNP O15075 EXPRESSION TAG SEQADV 5JZJ SER A 371 UNP O15075 EXPRESSION TAG SEQADV 5JZJ MET B 353 UNP O15075 INITIATING METHIONINE SEQADV 5JZJ HIS B 354 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS B 355 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS B 356 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS B 357 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS B 358 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS B 359 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS B 360 UNP O15075 EXPRESSION TAG SEQADV 5JZJ HIS B 361 UNP O15075 EXPRESSION TAG SEQADV 5JZJ GLY B 362 UNP O15075 EXPRESSION TAG SEQADV 5JZJ SER B 363 UNP O15075 EXPRESSION TAG SEQADV 5JZJ GLU B 364 UNP O15075 EXPRESSION TAG SEQADV 5JZJ ASN B 365 UNP O15075 EXPRESSION TAG SEQADV 5JZJ LEU B 366 UNP O15075 EXPRESSION TAG SEQADV 5JZJ TYR B 367 UNP O15075 EXPRESSION TAG SEQADV 5JZJ PHE B 368 UNP O15075 EXPRESSION TAG SEQADV 5JZJ GLN B 369 UNP O15075 EXPRESSION TAG SEQADV 5JZJ GLY B 370 UNP O15075 EXPRESSION TAG SEQADV 5JZJ SER B 371 UNP O15075 EXPRESSION TAG SEQRES 1 A 297 MET HIS HIS HIS HIS HIS HIS HIS HIS GLY SER GLU ASN SEQRES 2 A 297 LEU TYR PHE GLN GLY SER GLY GLU GLU VAL SER GLU GLU SEQRES 3 A 297 GLY PHE GLN ILE PRO ALA THR ILE THR GLU ARG TYR LYS SEQRES 4 A 297 VAL GLY ARG THR ILE GLY ASP GLY ASN PHE ALA VAL VAL SEQRES 5 A 297 LYS GLU CYS VAL GLU ARG SER THR ALA ARG GLU TYR ALA SEQRES 6 A 297 LEU LYS ILE ILE LYS LYS SER LYS CYS ARG GLY LYS GLU SEQRES 7 A 297 HIS MET ILE GLN ASN GLU VAL SER ILE LEU ARG ARG VAL SEQRES 8 A 297 LYS HIS PRO ASN ILE VAL LEU LEU ILE GLU GLU MET ASP SEQRES 9 A 297 VAL PRO THR GLU LEU TYR LEU VAL MET GLU LEU VAL LYS SEQRES 10 A 297 GLY GLY ASP LEU PHE ASP ALA ILE THR SER THR ASN LYS SEQRES 11 A 297 TYR THR GLU ARG ASP ALA SER GLY MET LEU TYR ASN LEU SEQRES 12 A 297 ALA SER ALA ILE LYS TYR LEU HIS SER LEU ASN ILE VAL SEQRES 13 A 297 HIS ARG ASP ILE LYS PRO GLU ASN LEU LEU VAL TYR GLU SEQRES 14 A 297 HIS GLN ASP GLY SER LYS SER LEU LYS LEU GLY ASP PHE SEQRES 15 A 297 GLY LEU ALA THR ILE VAL ASP GLY PRO LEU TYR THR VAL SEQRES 16 A 297 CYS GLY THR PRO THR TYR VAL ALA PRO GLU ILE ILE ALA SEQRES 17 A 297 GLU THR GLY TYR GLY LEU LYS VAL ASP ILE TRP ALA ALA SEQRES 18 A 297 GLY VAL ILE THR TYR ILE LEU LEU CYS GLY PHE PRO PRO SEQRES 19 A 297 PHE ARG GLY SER GLY ASP ASP GLN GLU VAL LEU PHE ASP SEQRES 20 A 297 GLN ILE LEU MET GLY GLN VAL ASP PHE PRO SER PRO TYR SEQRES 21 A 297 TRP ASP ASN VAL SER ASP SER ALA LYS GLU LEU ILE THR SEQRES 22 A 297 MET MET LEU LEU VAL ASP VAL ASP GLN ARG PHE SER ALA SEQRES 23 A 297 VAL GLN VAL LEU GLU HIS PRO TRP VAL ASN ASP SEQRES 1 B 297 MET HIS HIS HIS HIS HIS HIS HIS HIS GLY SER GLU ASN SEQRES 2 B 297 LEU TYR PHE GLN GLY SER GLY GLU GLU VAL SER GLU GLU SEQRES 3 B 297 GLY PHE GLN ILE PRO ALA THR ILE THR GLU ARG TYR LYS SEQRES 4 B 297 VAL GLY ARG THR ILE GLY ASP GLY ASN PHE ALA VAL VAL SEQRES 5 B 297 LYS GLU CYS VAL GLU ARG SER THR ALA ARG GLU TYR ALA SEQRES 6 B 297 LEU LYS ILE ILE LYS LYS SER LYS CYS ARG GLY LYS GLU SEQRES 7 B 297 HIS MET ILE GLN ASN GLU VAL SER ILE LEU ARG ARG VAL SEQRES 8 B 297 LYS HIS PRO ASN ILE VAL LEU LEU ILE GLU GLU MET ASP SEQRES 9 B 297 VAL PRO THR GLU LEU TYR LEU VAL MET GLU LEU VAL LYS SEQRES 10 B 297 GLY GLY ASP LEU PHE ASP ALA ILE THR SER THR ASN LYS SEQRES 11 B 297 TYR THR GLU ARG ASP ALA SER GLY MET LEU TYR ASN LEU SEQRES 12 B 297 ALA SER ALA ILE LYS TYR LEU HIS SER LEU ASN ILE VAL SEQRES 13 B 297 HIS ARG ASP ILE LYS PRO GLU ASN LEU LEU VAL TYR GLU SEQRES 14 B 297 HIS GLN ASP GLY SER LYS SER LEU LYS LEU GLY ASP PHE SEQRES 15 B 297 GLY LEU ALA THR ILE VAL ASP GLY PRO LEU TYR THR VAL SEQRES 16 B 297 CYS GLY THR PRO THR TYR VAL ALA PRO GLU ILE ILE ALA SEQRES 17 B 297 GLU THR GLY TYR GLY LEU LYS VAL ASP ILE TRP ALA ALA SEQRES 18 B 297 GLY VAL ILE THR TYR ILE LEU LEU CYS GLY PHE PRO PRO SEQRES 19 B 297 PHE ARG GLY SER GLY ASP ASP GLN GLU VAL LEU PHE ASP SEQRES 20 B 297 GLN ILE LEU MET GLY GLN VAL ASP PHE PRO SER PRO TYR SEQRES 21 B 297 TRP ASP ASN VAL SER ASP SER ALA LYS GLU LEU ILE THR SEQRES 22 B 297 MET MET LEU LEU VAL ASP VAL ASP GLN ARG PHE SER ALA SEQRES 23 B 297 VAL GLN VAL LEU GLU HIS PRO TRP VAL ASN ASP HET MG A 701 1 HET SO4 A 702 5 HET AN2 A 703 27 HET MG B 901 1 HET AN2 B 902 27 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM AN2 AMP PHOSPHORAMIDATE FORMUL 3 MG 2(MG 2+) FORMUL 4 SO4 O4 S 2- FORMUL 5 AN2 2(C10 H16 N6 O9 P2) FORMUL 8 HOH *493(H2 O) HELIX 1 AA1 PRO A 383 ARG A 389 1 7 HELIX 2 AA2 ASN A 435 ARG A 441 1 7 HELIX 3 AA3 ASP A 472 ASN A 481 1 10 HELIX 4 AA4 THR A 484 LEU A 505 1 22 HELIX 5 AA5 LYS A 513 GLU A 515 5 3 HELIX 6 AA6 ALA A 555 GLU A 561 1 7 HELIX 7 AA7 LYS A 567 GLY A 583 1 17 HELIX 8 AA8 VAL A 596 GLY A 604 1 9 HELIX 9 AA9 SER A 617 LEU A 628 1 12 HELIX 10 AB1 SER A 637 HIS A 644 1 8 HELIX 11 AB2 PRO A 645 ASN A 648 5 4 HELIX 12 AB3 PRO B 383 ARG B 389 1 7 HELIX 13 AB4 ASN B 435 ARG B 441 1 7 HELIX 14 AB5 ASP B 472 ASN B 481 1 10 HELIX 15 AB6 THR B 484 LEU B 505 1 22 HELIX 16 AB7 LYS B 513 GLU B 515 5 3 HELIX 17 AB8 THR B 550 VAL B 554 5 5 HELIX 18 AB9 ALA B 555 GLU B 561 1 7 HELIX 19 AC1 LYS B 567 GLY B 583 1 17 HELIX 20 AC2 VAL B 596 GLY B 604 1 9 HELIX 21 AC3 SER B 617 LEU B 628 1 12 HELIX 22 AC4 SER B 637 HIS B 644 1 8 HELIX 23 AC5 PRO B 645 ASN B 648 5 4 SHEET 1 AA1 5 TYR A 390 ASP A 398 0 SHEET 2 AA1 5 ALA A 402 GLU A 409 -1 O GLU A 406 N GLY A 393 SHEET 3 AA1 5 GLU A 415 LYS A 422 -1 O LEU A 418 N LYS A 405 SHEET 4 AA1 5 GLU A 460 GLU A 466 -1 O LEU A 463 N LYS A 419 SHEET 5 AA1 5 LEU A 451 ASP A 456 -1 N ILE A 452 O VAL A 464 SHEET 1 AA2 2 ILE A 507 VAL A 508 0 SHEET 2 AA2 2 THR A 538 ILE A 539 -1 O THR A 538 N VAL A 508 SHEET 1 AA3 2 LEU A 517 GLU A 521 0 SHEET 2 AA3 2 LYS A 527 LEU A 531 -1 O SER A 528 N TYR A 520 SHEET 1 AA4 5 TYR B 390 ASP B 398 0 SHEET 2 AA4 5 ALA B 402 GLU B 409 -1 O VAL B 404 N ILE B 396 SHEET 3 AA4 5 GLU B 415 LYS B 422 -1 O ILE B 420 N VAL B 403 SHEET 4 AA4 5 GLU B 460 GLU B 466 -1 O MET B 465 N ALA B 417 SHEET 5 AA4 5 LEU B 451 ASP B 456 -1 N MET B 455 O TYR B 462 SHEET 1 AA5 2 ILE B 507 VAL B 508 0 SHEET 2 AA5 2 THR B 538 ILE B 539 -1 O THR B 538 N VAL B 508 SHEET 1 AA6 2 LEU B 517 GLU B 521 0 SHEET 2 AA6 2 LYS B 527 LEU B 531 -1 O LYS B 530 N LEU B 518 LINK OD1 ASN A 516 MG MG A 701 1555 1555 2.12 LINK OD2 ASP A 533 MG MG A 701 1555 1555 2.06 LINK MG MG A 701 O1B AN2 A 703 1555 1555 2.06 LINK MG MG A 701 O1A AN2 A 703 1555 1555 2.07 LINK MG MG A 701 O HOH A 871 1555 1555 2.15 LINK MG MG A 701 O HOH A 921 1555 1555 2.12 LINK OD1 ASN B 516 MG MG B 901 1555 1555 2.09 LINK OD2 ASP B 533 MG MG B 901 1555 1555 2.08 LINK MG MG B 901 O2A AN2 B 902 1555 1555 2.12 LINK MG MG B 901 O1B AN2 B 902 1555 1555 2.09 LINK MG MG B 901 O HOH B1100 1555 1555 2.11 LINK MG MG B 901 O HOH B1134 1555 1555 2.10 CISPEP 1 SER A 610 PRO A 611 0 0.40 CISPEP 2 SER B 610 PRO B 611 0 3.92 SITE 1 AC1 5 ASN A 516 ASP A 533 AN2 A 703 HOH A 871 SITE 2 AC1 5 HOH A 921 SITE 1 AC2 7 ARG A 510 THR A 546 HOH A 868 HOH A 874 SITE 2 AC2 7 HOH A 944 ARG B 510 THR B 546 SITE 1 AC3 28 ILE A 396 GLY A 397 ASP A 398 GLY A 399 SITE 2 AC3 28 ASN A 400 PHE A 401 ALA A 402 VAL A 404 SITE 3 AC3 28 LYS A 419 VAL A 449 MET A 465 GLU A 466 SITE 4 AC3 28 VAL A 468 ASP A 472 GLU A 515 ASN A 516 SITE 5 AC3 28 LEU A 518 ASP A 533 MG A 701 HOH A 818 SITE 6 AC3 28 HOH A 839 HOH A 843 HOH A 864 HOH A 871 SITE 7 AC3 28 HOH A 893 HOH A 921 HOH A 941 HOH B1083 SITE 1 AC4 5 ASN B 516 ASP B 533 AN2 B 902 HOH B1100 SITE 2 AC4 5 HOH B1134 SITE 1 AC5 26 ARG A 427 ILE B 396 GLY B 397 GLY B 399 SITE 2 AC5 26 ALA B 402 VAL B 404 LYS B 419 VAL B 449 SITE 3 AC5 26 MET B 465 GLU B 466 VAL B 468 ASP B 472 SITE 4 AC5 26 GLU B 515 ASN B 516 LEU B 518 ASP B 533 SITE 5 AC5 26 MG B 901 HOH B1004 HOH B1021 HOH B1033 SITE 6 AC5 26 HOH B1060 HOH B1088 HOH B1100 HOH B1115 SITE 7 AC5 26 HOH B1134 HOH B1138 CRYST1 56.390 81.270 59.610 90.00 92.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017734 0.000000 0.000650 0.00000 SCALE2 0.000000 0.012305 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016787 0.00000