HEADER DNA 17-MAY-16 5JZQ TITLE ULTRAHIGH-RESOLUTION CENTROSYMMETRIC CRYSTAL STRUCTURE OF Z-DNA TITLE 2 REVEALS MASSIVE PRESENCE OF MULTIPLE CONFORMATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RACEMIC MIXTURE OF D- AND L-OLIGODEOXYRIBONUCLEOTIDES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS Z-DNA DUPLEX, SELF-COMPLEMENTARY DUPLEX, CENTROSYMMETRIC SPACE GROUP, KEYWDS 2 DNA ENANTIOMER; RACEMATE, L-RIBOSE NUCLEIC ACID; DISORDER; KEYWDS 3 MACROMOLECULAR PHASE PROBLEM, AB INITIO METHODS, DUAL-SPACE METHODS, KEYWDS 4 DNA EXPDTA X-RAY DIFFRACTION AUTHOR P.DROZDZAL,M.GILSKI,M.JASKOLSKI REVDAT 4 08-MAY-24 5JZQ 1 LINK REVDAT 3 08-AUG-18 5JZQ 1 REMARK REVDAT 2 21-DEC-16 5JZQ 1 JRNL REVDAT 1 09-NOV-16 5JZQ 0 JRNL AUTH P.DROZDZAL,M.GILSKI,M.JASKOLSKI JRNL TITL ULTRAHIGH-RESOLUTION CENTROSYMMETRIC CRYSTAL STRUCTURE OF JRNL TITL 2 Z-DNA REVEALS THE MASSIVE PRESENCE OF ALTERNATE JRNL TITL 3 CONFORMATIONS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 1203 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 27841753 JRNL DOI 10.1107/S205979831601679X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.DOI,M.INOUE,K.TOMOO,T.ISHIDA,Y.UEDA,M.AKAGI,H.URATA REMARK 1 TITL STRUCTURAL CHARACTERISTICS OF ENANTIOMORPHIC DNA: CRYSTAL REMARK 1 TITL 2 ANALYSIS OF RACEMATES OF THE D(CGCGCG) DUPLEX REMARK 1 REF J. AM. CHEM. SOC. V. 115 10432 1993 REMARK 1 REFN ISSN 0002-7863 REMARK 1 DOI 10.1021/JA00075A098 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.BRZEZINSKI,A.BRZUSZKIEWICZ,M.DAUTER,M.KUBICKI,M.JASKOLSKI, REMARK 1 AUTH 2 Z.DAUTER REMARK 1 TITL HIGH REGULARITY OF Z-DNA REVEALED BY ULTRA HIGH-RESOLUTION REMARK 1 TITL 2 CRYSTAL STRUCTURE AT 0.55 A. REMARK 1 REF NUCLEIC ACIDS RES. V. 39 6238 2011 REMARK 1 REFN ESSN 1362-4962 REMARK 1 PMID 21459852 REMARK 1 DOI 10.1093/NAR/GKR202 REMARK 1 REFERENCE 3 REMARK 1 AUTH Z.DAUTER,D.A.ADAMIAK REMARK 1 TITL ANOMALOUS SIGNAL OF PHOSPHORUS USED FOR PHASING DNA REMARK 1 TITL 2 OLIGOMER: IMPORTANCE OF DATA REDUNDANCY. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 57 990 2001 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11418767 REMARK 1 DOI 10.1107/S0907444901006382 REMARK 1 REFERENCE 4 REMARK 1 AUTH P.DROZDZAL,M.GILSKI,R.KIERZEK,L.LOMOZIK,M.JASKOLSKI REMARK 1 TITL ULTRAHIGH-RESOLUTION CRYSTAL STRUCTURES OF Z-DNA IN COMPLEX REMARK 1 TITL 2 WITH MN(2+) AND ZN(2+) IONS. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 69 1180 2013 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 23695262 REMARK 1 DOI 10.1107/S0907444913007798 REMARK 1 REFERENCE 5 REMARK 1 AUTH P.DROZDZAL,M.GILSKI,R.KIERZEK,L.LOMOZIK,M.JASKOLSKI REMARK 1 TITL HIGH-RESOLUTION CRYSTAL STRUCTURE OF Z-DNA IN COMPLEX WITH REMARK 1 TITL 2 CR(3+) CATIONS. REMARK 1 REF J. BIOL. INORG. CHEM. V. 20 595 2015 REMARK 1 REFN ESSN 1432-1327 REMARK 1 PMID 25687556 REMARK 1 DOI 10.1007/S00775-015-1247-5 REMARK 1 REFERENCE 6 REMARK 1 AUTH M.GILSKI,P.DROZDZAL,R.KIERZEK,M.JASKOLSKI REMARK 1 TITL ATOMIC RESOLUTION STRUCTURE OF A CHIMERIC DNA-RNA Z-TYPE REMARK 1 TITL 2 DUPLEX IN COMPLEX WITH BA(2+) IONS: A CASE OF COMPLICATED REMARK 1 TITL 3 MULTI-DOMAIN TWINNING. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 72 211 2016 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 26894669 REMARK 1 DOI 10.1107/S2059798315024365 REMARK 2 REMARK 2 RESOLUTION. 0.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL 2014/7 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.138 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.139 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.143 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 1.830 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 982 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.123 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.121 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.126 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 1.427 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 766 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 40459 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 240 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 339.10 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 133.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 45 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 ANGLE DISTANCES (A) : 1.776 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.008 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.128 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.065 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.115 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.(1975) 91, 201 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : CLOWNEY, GELBIN & PARKINSON REMARK 3 SPECIAL CASE: PHOSPHATE AND GLYCOSIDIC ANGLES ACCORDING TO PDB REMARK 3 MODEL 3P4J REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC ATOMIC DISPLACEMENT REMARK 3 PARAMETERS WERE USED. HYDROGEN ATOMS WERE ADDED AT RIDING REMARK 3 POSITION. THE FINAL REFINEMENT WAS CALCULATED USING WEIGHTED REMARK 3 FULL-MATRIX LEAST-SQUARES PROCEDURE AND ALL REFLECTIONS. REMARK 4 REMARK 4 5JZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000218440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7999 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI (111) CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XPREP REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53660 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.780 REMARK 200 RESOLUTION RANGE LOW (A) : 38.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 9.010 REMARK 200 R MERGE (I) : 0.03390 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.54 REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: SHELXS, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 MM WATER SOLUTION OF DNA MIXED 1:1 REMARK 280 WITH 0.2 M (NH4)2OAC, 0.15 M MG(OAC)2, 0.05 M HEPES SODIUM PH REMARK 280 7.0 AND 5% (W/V) PEG 4000 AND EQUILIBRATED AGAINST 0.5 ML OF 5% REMARK 280 (V/V) PEG 4000., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2/c 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z+1/2 REMARK 290 3555 -X,-Y,-Z REMARK 290 4555 X,-Y,Z+1/2 REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 7555 -X+1/2,-Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 -5.25204 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 17.47272 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 -5.25204 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.47272 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.65000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 8.80500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.39796 REMARK 290 SMTRY2 6 0.000000 1.000000 0.000000 8.80500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.47272 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.65000 REMARK 290 SMTRY2 7 0.000000 -1.000000 0.000000 8.80500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.39796 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 8.80500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 17.47272 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 102 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 241 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 244 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 2 C3' DG A 2 C2' -0.053 REMARK 500 DC B 9 C5' DC B 9 C4' 0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 282 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 283 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B 284 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 285 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B 286 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B 287 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B 288 DISTANCE = 7.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 OP2 REMARK 620 2 DG A 2 O5' 55.0 REMARK 620 3 DG A 6 OP2 89.0 86.6 REMARK 620 4 HOH A 218 O 85.2 79.8 6.8 REMARK 620 5 HOH A 234 O 80.9 83.1 8.2 8.2 REMARK 620 6 HOH A 235 O 84.5 77.8 8.8 2.1 9.6 REMARK 620 7 HOH A 237 O 88.6 80.0 7.8 4.1 12.0 4.2 REMARK 620 8 HOH B 229 O 77.4 76.5 12.3 7.8 6.6 7.7 11.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 OP2 REMARK 620 2 DG A 6 OP2 87.4 REMARK 620 3 HOH A 218 O 81.9 6.4 REMARK 620 4 HOH A 234 O 79.5 8.7 7.5 REMARK 620 5 HOH A 235 O 79.8 8.9 2.6 8.4 REMARK 620 6 HOH A 237 O 83.5 8.0 3.9 11.3 4.2 REMARK 620 7 HOH B 229 O 75.4 12.0 7.4 5.3 6.6 10.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 OP1 REMARK 620 2 DG A 2 OP1 14.5 REMARK 620 3 DC B 9 OP1 26.9 37.7 REMARK 620 4 HOH B 201 O 33.9 45.0 7.4 REMARK 620 5 HOH B 235 O 34.4 45.3 7.7 0.8 REMARK 620 6 HOH B 239 O 35.7 45.7 8.9 4.2 3.4 REMARK 620 7 HOH B 254 O 33.9 41.3 11.2 12.0 11.4 8.7 REMARK 620 8 HOH B 259 O 36.4 44.9 11.1 9.0 8.3 5.0 4.5 REMARK 620 9 HOH B 271 O 38.9 47.6 12.9 9.2 8.4 5.1 7.0 2.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 209 O REMARK 620 2 HOH A 209 O 18.5 REMARK 620 3 HOH A 209 O 88.9 107.4 REMARK 620 4 HOH A 209 O 70.3 88.8 18.5 REMARK 620 5 HOH A 239 O 76.7 77.9 89.3 85.6 REMARK 620 6 HOH A 239 O 106.6 111.0 75.5 82.1 33.4 REMARK 620 7 HOH A 239 O 85.6 89.3 77.9 76.7 158.4 150.4 REMARK 620 8 HOH A 239 O 82.1 75.5 111.0 106.6 150.3 169.5 33.4 REMARK 620 9 HOH A 254 O 109.1 90.6 162.0 179.2 93.7 97.6 103.8 73.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VTU RELATED DB: PDB REMARK 900 RELATED ID: 3P4J RELATED DB: PDB REMARK 900 RELATED ID: 1ICK RELATED DB: PDB REMARK 900 RELATED ID: 4HIF RELATED DB: PDB REMARK 900 RELATED ID: 4HIG RELATED DB: PDB REMARK 900 RELATED ID: 4R15 RELATED DB: PDB REMARK 900 RELATED ID: 5EBI RELATED DB: PDB DBREF 5JZQ A 1 6 PDB 5JZQ 5JZQ 1 6 DBREF 5JZQ B 7 12 PDB 5JZQ 5JZQ 7 12 SEQRES 1 A 6 DC DG DC DG DC DG SEQRES 1 B 6 DC DG DC DG DC DG HET MG A 101 2 HET MG A 102 1 HET MG B 101 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *142(H2 O) LINK OP2A DG A 2 MG A MG A 101 1555 4575 2.68 LINK OP2B DG A 2 MG B MG A 101 1555 4575 1.90 LINK O5'A DG A 2 MG A MG A 101 1555 4575 2.79 LINK OP1A DG A 2 MG MG B 101 1555 4585 1.94 LINK OP1B DG A 2 MG MG B 101 1555 4585 2.06 LINK OP2 DG A 6 MG A MG A 101 1555 1555 1.95 LINK OP2 DG A 6 MG B MG A 101 1555 1555 2.10 LINK MG A MG A 101 O AHOH A 218 1555 1555 2.00 LINK MG B MG A 101 O BHOH A 218 1555 1555 2.10 LINK MG A MG A 101 O AHOH A 234 1555 1555 2.10 LINK MG B MG A 101 O BHOH A 234 1555 1555 1.71 LINK MG A MG A 101 O HOH A 235 1555 1555 2.09 LINK MG B MG A 101 O HOH A 235 1555 1555 2.23 LINK MG A MG A 101 O HOH A 237 1555 1555 2.96 LINK MG B MG A 101 O HOH A 237 1555 1555 2.85 LINK MG A MG A 101 O AHOH B 229 1555 1555 2.10 LINK MG B MG A 101 O BHOH B 229 1555 1555 2.01 LINK MG MG A 102 O BHOH A 209 1555 1555 1.96 LINK MG MG A 102 O AHOH A 209 1555 1555 2.79 LINK MG MG A 102 O AHOH A 209 1555 2555 2.79 LINK MG MG A 102 O BHOH A 209 1555 2555 1.96 LINK MG MG A 102 O AHOH A 239 1555 1555 2.53 LINK MG MG A 102 O BHOH A 239 1555 1555 2.15 LINK MG MG A 102 O AHOH A 239 1555 2555 2.53 LINK MG MG A 102 O BHOH A 239 1555 2555 2.15 LINK MG MG A 102 O AHOH A 254 1555 1555 1.98 LINK MG MG A 102 O BHOH A 254 1555 1555 2.77 LINK MG MG A 102 O AHOH A 254 1555 2555 1.98 LINK MG MG A 102 O BHOH A 254 1555 2555 2.77 LINK OP1A DC B 9 MG MG B 101 1555 1555 2.38 LINK MG MG B 101 O HOH B 201 1555 1555 2.63 LINK MG MG B 101 O AHOH B 235 1555 1555 2.08 LINK MG MG B 101 O HOH B 239 1555 1555 2.09 LINK MG MG B 101 O HOH B 254 1555 1555 2.06 LINK MG MG B 101 O HOH B 259 1555 1555 2.70 LINK MG MG B 101 O HOH B 271 1555 1565 2.10 CRYST1 81.300 17.610 36.490 90.00 106.73 90.00 C 1 2/c 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012300 0.000000 0.003697 0.00000 SCALE2 0.000000 0.056786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028616 0.00000