HEADER TRANSFERASE/TRANSFERASE INHIBITOR 17-MAY-16 5K0K TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE PROTO-ONCOGENE TITLE 2 TYROSINE-PROTEIN KINASE MER IN COMPLEX WITH INHIBITOR UNC2434 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE MER; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 570-864; COMPND 5 SYNONYM: PROTO-ONCOGENE C-MER,RECEPTOR TYROSINE KINASE MERTK; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MERTK, MER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MACROCYCLIC, PYRROLOPYRIMIDINES, DRUG DESIGN, FIBRINOLYTIC AGENTS, KEYWDS 2 PROTEIN KINASE INHIBITORS, PROTO-ONCOGENE PROTEINS, PYRIMIDINES, KEYWDS 3 RECEPTOR PROTEIN-TYROSINE KINASES, STRUCTURE-ACTIVITY RELATIONSHIP, KEYWDS 4 THROMBOSIS, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,J.LIU,W.ZHANG,M.A.STASHKO,J.NICHOLS,D.DERYCKERE,M.J.MILEY, AUTHOR 2 J.NORRIS-DROUIN,Z.CHEN,M.MACHIUS,E.WOOD,D.K.GRAHAM,H.S.EARP, AUTHOR 3 K.GRAHAM,D.KIREEV,S.V.FRYE REVDAT 2 27-SEP-23 5K0K 1 COMPND HETNAM REVDAT 1 11-JAN-17 5K0K 0 JRNL AUTH X.WANG,J.LIU,W.ZHANG,M.A.STASHKO,J.NICHOLS,M.J.MILEY, JRNL AUTH 2 J.NORRIS-DROUIN,Z.CHEN,M.MACHIUS,D.DERYCKERE,E.WOOD, JRNL AUTH 3 D.K.GRAHAM,H.S.EARP,D.KIREEV,S.V.FRYE JRNL TITL DESIGN AND SYNTHESIS OF NOVEL MACROCYCLIC MER TYROSINE JRNL TITL 2 KINASE INHIBITORS. JRNL REF ACS MED CHEM LETT V. 7 1044 2016 JRNL REFN ISSN 1948-5875 JRNL PMID 27994735 JRNL DOI 10.1021/ACSMEDCHEMLETT.6B00221 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1261 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.1 REMARK 3 NUMBER OF REFLECTIONS : 17714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5498 - 5.9736 1.00 1461 163 0.1925 0.2354 REMARK 3 2 5.9736 - 4.7454 1.00 1434 159 0.1762 0.2076 REMARK 3 3 4.7454 - 4.1466 1.00 1427 158 0.1599 0.1831 REMARK 3 4 4.1466 - 3.7680 1.00 1428 159 0.1684 0.2240 REMARK 3 5 3.7680 - 3.4982 1.00 1438 160 0.1857 0.2256 REMARK 3 6 3.4982 - 3.2921 1.00 1413 157 0.1995 0.2789 REMARK 3 7 3.2921 - 3.1274 1.00 1423 158 0.2323 0.3457 REMARK 3 8 3.1274 - 2.9913 0.98 1380 154 0.2415 0.3189 REMARK 3 9 2.9913 - 2.8762 0.85 1197 133 0.2394 0.3258 REMARK 3 10 2.8762 - 2.7770 0.73 1045 116 0.2365 0.2935 REMARK 3 11 2.7770 - 2.6902 0.65 910 101 0.2399 0.3192 REMARK 3 12 2.6902 - 2.6134 0.54 769 85 0.2458 0.3441 REMARK 3 13 2.6134 - 2.5446 0.44 617 69 0.2387 0.2717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4276 REMARK 3 ANGLE : 0.720 5782 REMARK 3 CHIRALITY : 0.043 640 REMARK 3 PLANARITY : 0.003 722 REMARK 3 DIHEDRAL : 13.799 1650 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 577 THROUGH 612 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8882 -9.3694 19.0199 REMARK 3 T TENSOR REMARK 3 T11: 0.3393 T22: 0.4068 REMARK 3 T33: 0.3344 T12: 0.0389 REMARK 3 T13: -0.0479 T23: -0.0477 REMARK 3 L TENSOR REMARK 3 L11: 8.1120 L22: 8.9855 REMARK 3 L33: 9.4433 L12: 0.0587 REMARK 3 L13: 1.7826 L23: 0.5027 REMARK 3 S TENSOR REMARK 3 S11: 0.1617 S12: -0.6049 S13: -0.4162 REMARK 3 S21: -0.0165 S22: -0.0011 S23: -0.5112 REMARK 3 S31: 0.3193 S32: 0.6197 S33: -0.1983 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 613 THROUGH 628 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4194 -2.0477 25.3059 REMARK 3 T TENSOR REMARK 3 T11: 0.3393 T22: 0.8161 REMARK 3 T33: 0.5253 T12: 0.0619 REMARK 3 T13: -0.1457 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 4.7053 L22: 0.3790 REMARK 3 L33: 3.9801 L12: 0.8658 REMARK 3 L13: 4.1486 L23: 0.4601 REMARK 3 S TENSOR REMARK 3 S11: -0.6445 S12: -0.3191 S13: 0.3293 REMARK 3 S21: 0.0186 S22: -0.0298 S23: -0.5604 REMARK 3 S31: 0.0784 S32: 0.9512 S33: 0.2963 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 629 THROUGH 651 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6430 -4.3540 33.4314 REMARK 3 T TENSOR REMARK 3 T11: 0.5409 T22: 0.5161 REMARK 3 T33: 0.4675 T12: 0.0142 REMARK 3 T13: 0.0457 T23: -0.0573 REMARK 3 L TENSOR REMARK 3 L11: 3.5886 L22: 7.0578 REMARK 3 L33: 8.8664 L12: -4.6811 REMARK 3 L13: 4.4333 L23: -3.9487 REMARK 3 S TENSOR REMARK 3 S11: 0.3731 S12: 0.6518 S13: 0.0627 REMARK 3 S21: 0.6522 S22: -0.2473 S23: -0.8100 REMARK 3 S31: -0.1660 S32: 1.4965 S33: -0.1297 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 652 THROUGH 763 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4818 4.1131 23.8314 REMARK 3 T TENSOR REMARK 3 T11: 0.2118 T22: 0.2423 REMARK 3 T33: 0.2538 T12: -0.0362 REMARK 3 T13: -0.0190 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.5908 L22: 4.2866 REMARK 3 L33: 2.9471 L12: -1.0789 REMARK 3 L13: -1.2147 L23: -0.2191 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: -0.1054 S13: -0.2210 REMARK 3 S21: -0.2559 S22: 0.1455 S23: 0.1037 REMARK 3 S31: 0.2046 S32: 0.1161 S33: -0.1978 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 764 THROUGH 814 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4686 19.7738 32.6040 REMARK 3 T TENSOR REMARK 3 T11: 0.2444 T22: 0.3360 REMARK 3 T33: 0.3794 T12: -0.0726 REMARK 3 T13: -0.0235 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 4.5398 L22: 5.5246 REMARK 3 L33: 5.6827 L12: -0.1019 REMARK 3 L13: -0.6500 L23: -0.1334 REMARK 3 S TENSOR REMARK 3 S11: 0.1998 S12: -0.3504 S13: 0.3940 REMARK 3 S21: 0.4138 S22: -0.0403 S23: -0.6326 REMARK 3 S31: -0.6994 S32: 0.5306 S33: -0.1567 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 815 THROUGH 863 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1189 16.5468 34.6716 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.3238 REMARK 3 T33: 0.2554 T12: 0.0302 REMARK 3 T13: 0.1101 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 4.9423 L22: 5.9934 REMARK 3 L33: 3.9837 L12: 0.9277 REMARK 3 L13: -0.0050 L23: -0.7666 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: -0.2144 S13: -0.0136 REMARK 3 S21: 0.2252 S22: 0.1802 S23: 0.1548 REMARK 3 S31: -0.4129 S32: -0.5894 S33: -0.1961 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 577 THROUGH 643 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7316 51.4224 17.7656 REMARK 3 T TENSOR REMARK 3 T11: 0.3275 T22: 0.5010 REMARK 3 T33: 0.3098 T12: -0.1135 REMARK 3 T13: -0.0387 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 5.6950 L22: 3.9328 REMARK 3 L33: 5.8155 L12: 0.3533 REMARK 3 L13: -2.4181 L23: -1.5327 REMARK 3 S TENSOR REMARK 3 S11: 0.0953 S12: 0.3173 S13: 0.2254 REMARK 3 S21: -0.3162 S22: 0.1542 S23: -0.0873 REMARK 3 S31: -0.4202 S32: 0.7967 S33: -0.2492 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 644 THROUGH 678 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7642 47.7370 15.2608 REMARK 3 T TENSOR REMARK 3 T11: 0.3380 T22: 0.5414 REMARK 3 T33: 0.2394 T12: -0.0523 REMARK 3 T13: 0.0029 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 4.5040 L22: 4.5110 REMARK 3 L33: 2.6625 L12: 2.7875 REMARK 3 L13: 2.6588 L23: 1.4333 REMARK 3 S TENSOR REMARK 3 S11: -0.1736 S12: 0.0143 S13: 0.0607 REMARK 3 S21: 0.0482 S22: 0.1085 S23: -0.0171 REMARK 3 S31: 0.0967 S32: 0.9189 S33: 0.0904 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 679 THROUGH 862 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1040 29.2947 3.7596 REMARK 3 T TENSOR REMARK 3 T11: 0.1986 T22: 0.2601 REMARK 3 T33: 0.2486 T12: -0.0427 REMARK 3 T13: -0.0093 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 2.4004 L22: 5.0714 REMARK 3 L33: 5.2733 L12: -0.2269 REMARK 3 L13: -0.1218 L23: -1.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: 0.0676 S13: -0.0195 REMARK 3 S21: -0.1005 S22: -0.0100 S23: -0.1426 REMARK 3 S31: 0.1548 S32: 0.1222 S33: 0.0109 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20516 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.545 REMARK 200 RESOLUTION RANGE LOW (A) : 34.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BRB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 32.5 MG/ML (IN 20 MM TRIS REMARK 280 PH 8.0, 500 MM NACL, 2MM BME) WAS INCUBATED OVERNIGHT WITH REMARK 280 INHIBITOR AT 2.5 MM FINAL CONCENTRATION, AND THEN WAS MIXED 1:1 REMARK 280 WITH CRYSTALLIZATION SOLUTION (27-33% (V/V) PEG 400, 200 MM REMARK 280 MGCL2, 100 MM TRIS PH 8.5)., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 285.2K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.65750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 552 REMARK 465 GLY A 553 REMARK 465 SER A 554 REMARK 465 SER A 555 REMARK 465 HIS A 556 REMARK 465 HIS A 557 REMARK 465 HIS A 558 REMARK 465 HIS A 559 REMARK 465 HIS A 560 REMARK 465 HIS A 561 REMARK 465 SER A 562 REMARK 465 SER A 563 REMARK 465 GLY A 564 REMARK 465 LEU A 565 REMARK 465 VAL A 566 REMARK 465 PRO A 567 REMARK 465 ARG A 568 REMARK 465 GLY A 569 REMARK 465 SER A 570 REMARK 465 GLU A 571 REMARK 465 GLU A 572 REMARK 465 LEU A 573 REMARK 465 GLN A 574 REMARK 465 ASN A 575 REMARK 465 LYS A 576 REMARK 465 GLY A 596 REMARK 465 GLU A 597 REMARK 465 PHE A 598 REMARK 465 MET A 659 REMARK 465 SER A 660 REMARK 465 SER A 661 REMARK 465 GLN A 662 REMARK 465 GLY A 663 REMARK 465 ILE A 664 REMARK 465 SER A 745 REMARK 465 LYS A 746 REMARK 465 LYS A 747 REMARK 465 ILE A 748 REMARK 465 TYR A 749 REMARK 465 SER A 750 REMARK 465 GLY A 751 REMARK 465 ASP A 752 REMARK 465 TYR A 753 REMARK 465 TYR A 754 REMARK 465 ARG A 755 REMARK 465 GLN A 756 REMARK 465 GLY A 757 REMARK 465 ARG A 758 REMARK 465 ILE A 759 REMARK 465 ALA A 760 REMARK 465 LYS A 761 REMARK 465 MET A 762 REMARK 465 VAL A 864 REMARK 465 MET B 552 REMARK 465 GLY B 553 REMARK 465 SER B 554 REMARK 465 SER B 555 REMARK 465 HIS B 556 REMARK 465 HIS B 557 REMARK 465 HIS B 558 REMARK 465 HIS B 559 REMARK 465 HIS B 560 REMARK 465 HIS B 561 REMARK 465 SER B 562 REMARK 465 SER B 563 REMARK 465 GLY B 564 REMARK 465 LEU B 565 REMARK 465 VAL B 566 REMARK 465 PRO B 567 REMARK 465 ARG B 568 REMARK 465 GLY B 569 REMARK 465 SER B 570 REMARK 465 GLU B 571 REMARK 465 GLU B 572 REMARK 465 LEU B 573 REMARK 465 GLN B 574 REMARK 465 ASN B 575 REMARK 465 LYS B 576 REMARK 465 GLU B 597 REMARK 465 PHE B 598 REMARK 465 MET B 621 REMARK 465 LYS B 622 REMARK 465 LEU B 623 REMARK 465 ASP B 624 REMARK 465 ASN B 625 REMARK 465 SER B 626 REMARK 465 SER B 627 REMARK 465 GLN B 628 REMARK 465 ARG B 629 REMARK 465 GLU B 630 REMARK 465 ILE B 631 REMARK 465 GLU B 632 REMARK 465 GLU B 633 REMARK 465 PHE B 634 REMARK 465 LEU B 635 REMARK 465 SER B 636 REMARK 465 GLY B 743 REMARK 465 LEU B 744 REMARK 465 SER B 745 REMARK 465 LYS B 746 REMARK 465 LYS B 747 REMARK 465 ILE B 748 REMARK 465 TYR B 749 REMARK 465 SER B 750 REMARK 465 GLY B 751 REMARK 465 ASP B 752 REMARK 465 TYR B 753 REMARK 465 TYR B 754 REMARK 465 ARG B 755 REMARK 465 GLN B 756 REMARK 465 GLY B 757 REMARK 465 ARG B 758 REMARK 465 ILE B 759 REMARK 465 ALA B 760 REMARK 465 LYS B 761 REMARK 465 MET B 762 REMARK 465 ASP B 863 REMARK 465 VAL B 864 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 689 HG1 THR A 690 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 690 -51.89 70.42 REMARK 500 PRO A 692 152.21 -46.03 REMARK 500 ASP A 723 43.54 -163.93 REMARK 500 THR B 690 -56.31 70.85 REMARK 500 ARG B 722 -7.68 74.51 REMARK 500 ASP B 723 55.16 -155.02 REMARK 500 ASN B 728 41.67 -106.19 REMARK 500 ALA B 773 -68.58 -96.91 REMARK 500 ASP B 824 67.03 -104.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 728 OD1 REMARK 620 2 ASP B 741 OD1 85.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6Q1 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6Q1 B 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K0X RELATED DB: PDB DBREF 5K0K A 570 864 UNP Q12866 MERTK_HUMAN 570 864 DBREF 5K0K B 570 864 UNP Q12866 MERTK_HUMAN 570 864 SEQADV 5K0K MET A 552 UNP Q12866 INITIATING METHIONINE SEQADV 5K0K GLY A 553 UNP Q12866 EXPRESSION TAG SEQADV 5K0K SER A 554 UNP Q12866 EXPRESSION TAG SEQADV 5K0K SER A 555 UNP Q12866 EXPRESSION TAG SEQADV 5K0K HIS A 556 UNP Q12866 EXPRESSION TAG SEQADV 5K0K HIS A 557 UNP Q12866 EXPRESSION TAG SEQADV 5K0K HIS A 558 UNP Q12866 EXPRESSION TAG SEQADV 5K0K HIS A 559 UNP Q12866 EXPRESSION TAG SEQADV 5K0K HIS A 560 UNP Q12866 EXPRESSION TAG SEQADV 5K0K HIS A 561 UNP Q12866 EXPRESSION TAG SEQADV 5K0K SER A 562 UNP Q12866 EXPRESSION TAG SEQADV 5K0K SER A 563 UNP Q12866 EXPRESSION TAG SEQADV 5K0K GLY A 564 UNP Q12866 EXPRESSION TAG SEQADV 5K0K LEU A 565 UNP Q12866 EXPRESSION TAG SEQADV 5K0K VAL A 566 UNP Q12866 EXPRESSION TAG SEQADV 5K0K PRO A 567 UNP Q12866 EXPRESSION TAG SEQADV 5K0K ARG A 568 UNP Q12866 EXPRESSION TAG SEQADV 5K0K GLY A 569 UNP Q12866 EXPRESSION TAG SEQADV 5K0K MET B 552 UNP Q12866 INITIATING METHIONINE SEQADV 5K0K GLY B 553 UNP Q12866 EXPRESSION TAG SEQADV 5K0K SER B 554 UNP Q12866 EXPRESSION TAG SEQADV 5K0K SER B 555 UNP Q12866 EXPRESSION TAG SEQADV 5K0K HIS B 556 UNP Q12866 EXPRESSION TAG SEQADV 5K0K HIS B 557 UNP Q12866 EXPRESSION TAG SEQADV 5K0K HIS B 558 UNP Q12866 EXPRESSION TAG SEQADV 5K0K HIS B 559 UNP Q12866 EXPRESSION TAG SEQADV 5K0K HIS B 560 UNP Q12866 EXPRESSION TAG SEQADV 5K0K HIS B 561 UNP Q12866 EXPRESSION TAG SEQADV 5K0K SER B 562 UNP Q12866 EXPRESSION TAG SEQADV 5K0K SER B 563 UNP Q12866 EXPRESSION TAG SEQADV 5K0K GLY B 564 UNP Q12866 EXPRESSION TAG SEQADV 5K0K LEU B 565 UNP Q12866 EXPRESSION TAG SEQADV 5K0K VAL B 566 UNP Q12866 EXPRESSION TAG SEQADV 5K0K PRO B 567 UNP Q12866 EXPRESSION TAG SEQADV 5K0K ARG B 568 UNP Q12866 EXPRESSION TAG SEQADV 5K0K GLY B 569 UNP Q12866 EXPRESSION TAG SEQRES 1 A 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 313 LEU VAL PRO ARG GLY SER GLU GLU LEU GLN ASN LYS LEU SEQRES 3 A 313 GLU ASP VAL VAL ILE ASP ARG ASN LEU LEU ILE LEU GLY SEQRES 4 A 313 LYS ILE LEU GLY GLU GLY GLU PHE GLY SER VAL MET GLU SEQRES 5 A 313 GLY ASN LEU LYS GLN GLU ASP GLY THR SER LEU LYS VAL SEQRES 6 A 313 ALA VAL LYS THR MET LYS LEU ASP ASN SER SER GLN ARG SEQRES 7 A 313 GLU ILE GLU GLU PHE LEU SER GLU ALA ALA CYS MET LYS SEQRES 8 A 313 ASP PHE SER HIS PRO ASN VAL ILE ARG LEU LEU GLY VAL SEQRES 9 A 313 CYS ILE GLU MET SER SER GLN GLY ILE PRO LYS PRO MET SEQRES 10 A 313 VAL ILE LEU PRO PHE MET LYS TYR GLY ASP LEU HIS THR SEQRES 11 A 313 TYR LEU LEU TYR SER ARG LEU GLU THR GLY PRO LYS HIS SEQRES 12 A 313 ILE PRO LEU GLN THR LEU LEU LYS PHE MET VAL ASP ILE SEQRES 13 A 313 ALA LEU GLY MET GLU TYR LEU SER ASN ARG ASN PHE LEU SEQRES 14 A 313 HIS ARG ASP LEU ALA ALA ARG ASN CYS MET LEU ARG ASP SEQRES 15 A 313 ASP MET THR VAL CYS VAL ALA ASP PHE GLY LEU SER LYS SEQRES 16 A 313 LYS ILE TYR SER GLY ASP TYR TYR ARG GLN GLY ARG ILE SEQRES 17 A 313 ALA LYS MET PRO VAL LYS TRP ILE ALA ILE GLU SER LEU SEQRES 18 A 313 ALA ASP ARG VAL TYR THR SER LYS SER ASP VAL TRP ALA SEQRES 19 A 313 PHE GLY VAL THR MET TRP GLU ILE ALA THR ARG GLY MET SEQRES 20 A 313 THR PRO TYR PRO GLY VAL GLN ASN HIS GLU MET TYR ASP SEQRES 21 A 313 TYR LEU LEU HIS GLY HIS ARG LEU LYS GLN PRO GLU ASP SEQRES 22 A 313 CYS LEU ASP GLU LEU TYR GLU ILE MET TYR SER CYS TRP SEQRES 23 A 313 ARG THR ASP PRO LEU ASP ARG PRO THR PHE SER VAL LEU SEQRES 24 A 313 ARG LEU GLN LEU GLU LYS LEU LEU GLU SER LEU PRO ASP SEQRES 25 A 313 VAL SEQRES 1 B 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 313 LEU VAL PRO ARG GLY SER GLU GLU LEU GLN ASN LYS LEU SEQRES 3 B 313 GLU ASP VAL VAL ILE ASP ARG ASN LEU LEU ILE LEU GLY SEQRES 4 B 313 LYS ILE LEU GLY GLU GLY GLU PHE GLY SER VAL MET GLU SEQRES 5 B 313 GLY ASN LEU LYS GLN GLU ASP GLY THR SER LEU LYS VAL SEQRES 6 B 313 ALA VAL LYS THR MET LYS LEU ASP ASN SER SER GLN ARG SEQRES 7 B 313 GLU ILE GLU GLU PHE LEU SER GLU ALA ALA CYS MET LYS SEQRES 8 B 313 ASP PHE SER HIS PRO ASN VAL ILE ARG LEU LEU GLY VAL SEQRES 9 B 313 CYS ILE GLU MET SER SER GLN GLY ILE PRO LYS PRO MET SEQRES 10 B 313 VAL ILE LEU PRO PHE MET LYS TYR GLY ASP LEU HIS THR SEQRES 11 B 313 TYR LEU LEU TYR SER ARG LEU GLU THR GLY PRO LYS HIS SEQRES 12 B 313 ILE PRO LEU GLN THR LEU LEU LYS PHE MET VAL ASP ILE SEQRES 13 B 313 ALA LEU GLY MET GLU TYR LEU SER ASN ARG ASN PHE LEU SEQRES 14 B 313 HIS ARG ASP LEU ALA ALA ARG ASN CYS MET LEU ARG ASP SEQRES 15 B 313 ASP MET THR VAL CYS VAL ALA ASP PHE GLY LEU SER LYS SEQRES 16 B 313 LYS ILE TYR SER GLY ASP TYR TYR ARG GLN GLY ARG ILE SEQRES 17 B 313 ALA LYS MET PRO VAL LYS TRP ILE ALA ILE GLU SER LEU SEQRES 18 B 313 ALA ASP ARG VAL TYR THR SER LYS SER ASP VAL TRP ALA SEQRES 19 B 313 PHE GLY VAL THR MET TRP GLU ILE ALA THR ARG GLY MET SEQRES 20 B 313 THR PRO TYR PRO GLY VAL GLN ASN HIS GLU MET TYR ASP SEQRES 21 B 313 TYR LEU LEU HIS GLY HIS ARG LEU LYS GLN PRO GLU ASP SEQRES 22 B 313 CYS LEU ASP GLU LEU TYR GLU ILE MET TYR SER CYS TRP SEQRES 23 B 313 ARG THR ASP PRO LEU ASP ARG PRO THR PHE SER VAL LEU SEQRES 24 B 313 ARG LEU GLN LEU GLU LYS LEU LEU GLU SER LEU PRO ASP SEQRES 25 B 313 VAL HET CL A 901 1 HET CL A 902 1 HET CL A 903 1 HET 6Q1 A 904 69 HET CL A 905 1 HET CL B 901 1 HET CL B 902 1 HET MG B 903 1 HET 6Q1 B 904 69 HETNAM CL CHLORIDE ION HETNAM 6Q1 15-{4-[(4-METHYLPIPERAZIN-1-YL)METHYL]PHENYL}-4,5,6,7, HETNAM 2 6Q1 9,10,11,12-OCTAHYDRO-2,16-(AZENOMETHENO)PYRROLO[2,1- HETNAM 3 6Q1 D][1,3,5,9]TE TRAAZACYCLOTETRADECIN-8(3H)-ONE HETNAM MG MAGNESIUM ION HETSYN 6Q1 UNC2434 FORMUL 3 CL 6(CL 1-) FORMUL 6 6Q1 2(C26 H35 N7 O) FORMUL 10 MG MG 2+ FORMUL 12 HOH *28(H2 O) HELIX 1 AA1 ASP A 583 ASN A 585 5 3 HELIX 2 AA2 GLN A 628 LYS A 642 1 15 HELIX 3 AA3 ASP A 678 ARG A 687 1 10 HELIX 4 AA4 PRO A 696 ARG A 717 1 22 HELIX 5 AA5 ALA A 725 ARG A 727 5 3 HELIX 6 AA6 PRO A 763 ILE A 767 5 5 HELIX 7 AA7 ALA A 768 ASP A 774 1 7 HELIX 8 AA8 THR A 778 THR A 795 1 18 HELIX 9 AA9 GLN A 805 HIS A 807 5 3 HELIX 10 AB1 GLU A 808 HIS A 815 1 8 HELIX 11 AB2 LEU A 826 CYS A 836 1 11 HELIX 12 AB3 THR A 846 SER A 860 1 15 HELIX 13 AB4 ASP B 583 ASN B 585 5 3 HELIX 14 AB5 ALA B 638 PHE B 644 1 7 HELIX 15 AB6 ASP B 678 SER B 686 1 9 HELIX 16 AB7 PRO B 696 ARG B 717 1 22 HELIX 17 AB8 ALA B 725 ARG B 727 5 3 HELIX 18 AB9 PRO B 763 ILE B 767 5 5 HELIX 19 AC1 ALA B 768 ASP B 774 1 7 HELIX 20 AC2 THR B 778 THR B 795 1 18 HELIX 21 AC3 GLN B 805 HIS B 807 5 3 HELIX 22 AC4 GLU B 808 HIS B 815 1 8 HELIX 23 AC5 LEU B 826 SER B 835 1 10 HELIX 24 AC6 CYS B 836 ARG B 838 5 3 HELIX 25 AC7 ASP B 840 ARG B 844 5 5 HELIX 26 AC8 THR B 846 LEU B 861 1 16 SHEET 1 AA1 5 LEU A 587 GLY A 594 0 SHEET 2 AA1 5 VAL A 601 LYS A 607 -1 O VAL A 601 N GLY A 594 SHEET 3 AA1 5 SER A 613 THR A 620 -1 O LEU A 614 N LEU A 606 SHEET 4 AA1 5 PRO A 667 PRO A 672 -1 O LEU A 671 N ALA A 617 SHEET 5 AA1 5 GLY A 654 ILE A 657 -1 N GLY A 654 O ILE A 670 SHEET 1 AA2 2 CYS A 729 LEU A 731 0 SHEET 2 AA2 2 VAL A 737 VAL A 739 -1 O CYS A 738 N MET A 730 SHEET 1 AA3 5 LEU B 587 GLY B 594 0 SHEET 2 AA3 5 VAL B 601 LYS B 607 -1 O VAL B 601 N GLY B 594 SHEET 3 AA3 5 SER B 613 LYS B 619 -1 O LEU B 614 N LEU B 606 SHEET 4 AA3 5 PRO B 665 PRO B 672 -1 O LEU B 671 N ALA B 617 SHEET 5 AA3 5 GLY B 654 MET B 659 -1 N GLU B 658 O LYS B 666 SHEET 1 AA4 2 CYS B 729 LEU B 731 0 SHEET 2 AA4 2 VAL B 737 VAL B 739 -1 O CYS B 738 N MET B 730 LINK OD1AASN B 728 MG MG B 903 1555 1555 2.17 LINK OD1 ASP B 741 MG MG B 903 1555 1555 2.26 SITE 1 AC1 2 ARG A 651 ARG A 732 SITE 1 AC2 2 PRO A 802 LYS A 820 SITE 1 AC3 3 ARG A 584 ILE A 588 LEU A 589 SITE 1 AC4 10 ALA A 617 ILE A 650 LEU A 671 PRO A 672 SITE 2 AC4 10 PHE A 673 MET A 674 LYS A 675 ARG A 727 SITE 3 AC4 10 MET A 730 ALA A 740 SITE 1 AC5 3 ARG A 687 HOH A1010 ARG B 687 SITE 1 AC6 3 ARG B 584 ILE B 588 LEU B 589 SITE 1 AC7 2 LEU B 819 LYS B 820 SITE 1 AC8 2 ASN B 728 ASP B 741 SITE 1 AC9 9 LYS B 591 VAL B 601 ALA B 617 PRO B 672 SITE 2 AC9 9 PHE B 673 MET B 674 LYS B 675 MET B 730 SITE 3 AC9 9 ASP B 741 CRYST1 51.072 91.315 69.203 90.00 100.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019580 0.000000 0.003599 0.00000 SCALE2 0.000000 0.010951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014692 0.00000