HEADER TRANSFERASE 18-MAY-16 5K26 TITLE STRUCTURE OF THE SH3 DOMAIN OF MLK3 BOUND TO PEPTIDE GENERATED FROM TITLE 2 PHAGE DISPLAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11,CHIMERA COMPND 3 PROTEIN OF MLK3-SH3 AND MIP; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: SH3 DOMAIN (UNP RESIDUES 41-105),SH3 DOMAIN (UNP RESIDUES COMPND 6 41-105); COMPND 7 SYNONYM: MIXED LINEAGE KINASE 3,SRC-HOMOLOGY 3 DOMAIN-CONTAINING COMPND 8 PROLINE-RICH KINASE,MIXED LINEAGE KINASE 3,SRC-HOMOLOGY 3 DOMAIN- COMPND 9 CONTAINING PROLINE-RICH KINASE; COMPND 10 EC: 2.7.11.25,2.7.11.25; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP3K11, MLK3, PTK1, SPRK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MLK3, SH3, PHAGE DISPLAY, SIGNALLING PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.K.KALL,A.LAVIE REVDAT 3 27-SEP-23 5K26 1 REMARK REVDAT 2 26-DEC-18 5K26 1 JRNL REVDAT 1 13-DEC-17 5K26 0 JRNL AUTH M.E.KOKOSZKA,S.L.KALL,S.KHOSLA,J.E.MCGINNIS,A.LAVIE,B.K.KAY JRNL TITL IDENTIFICATION OF TWO DISTINCT PEPTIDE-BINDING POCKETS IN JRNL TITL 2 THE SH3 DOMAIN OF HUMAN MIXED-LINEAGE KINASE 3. JRNL REF J. BIOL. CHEM. V. 293 13553 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29980598 JRNL DOI 10.1074/JBC.RA117.000262 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 46672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2412 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2666 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1159 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 1.77000 REMARK 3 B12 (A**2) : -0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.034 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1292 ; 0.035 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1171 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1769 ; 3.006 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2685 ; 1.585 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 171 ; 6.022 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;35.606 ;23.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 186 ;12.764 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;20.048 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 173 ; 0.178 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1571 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 336 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 646 ; 3.475 ; 1.675 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 645 ; 3.459 ; 1.666 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 813 ; 4.308 ; 2.513 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 814 ; 4.326 ; 2.518 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 646 ; 7.900 ; 2.172 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 646 ; 7.901 ; 2.171 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 951 ;11.004 ; 3.101 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1429 ; 9.850 ;15.211 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1430 ; 9.847 ;15.222 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2463 ; 7.214 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 44 ;32.597 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2502 ;21.620 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5K26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978720 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48242 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 55.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 4.920 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.55 REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1SEM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-PHOSPHATE, 0.1 M K-PHOSPHATE, REMARK 280 0.1 M MES 6.5, 1.5 M NACL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 11.73333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 39 REMARK 465 MET A 40 REMARK 465 TYR A 41 REMARK 465 ALA A 119 REMARK 465 GLU A 120 REMARK 465 THR A 121 REMARK 465 VAL A 122 REMARK 465 GLU A 123 REMARK 465 SER A 124 REMARK 465 HIS B 39 REMARK 465 MET B 40 REMARK 465 TYR B 41 REMARK 465 ALA B 42 REMARK 465 ASN B 43 REMARK 465 ALA B 119 REMARK 465 GLU B 120 REMARK 465 THR B 121 REMARK 465 VAL B 122 REMARK 465 GLU B 123 REMARK 465 SER B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 118 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY B 82 O HOH B 201 1.70 REMARK 500 O HOH B 227 O HOH B 238 1.70 REMARK 500 O HOH B 205 O HOH B 212 1.89 REMARK 500 ND2 ASN B 98 O HOH B 202 1.91 REMARK 500 NE2 GLN A 57 O HOH A 301 2.03 REMARK 500 O HOH A 324 O HOH A 332 2.05 REMARK 500 O GLU B 81 O HOH B 203 2.07 REMARK 500 O3S MES A 201 O HOH A 302 2.12 REMARK 500 O HOH B 201 O HOH B 223 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 57 O HOH B 235 1556 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 53 CD GLU A 53 OE2 0.097 REMARK 500 GLU A 81 CD GLU A 81 OE2 0.077 REMARK 500 TRP B 46 CG TRP B 46 CD1 0.085 REMARK 500 GLU B 53 CD GLU B 53 OE2 0.146 REMARK 500 SER B 78 C GLY B 79 N 0.206 REMARK 500 GLU B 81 C GLU B 81 O 0.118 REMARK 500 GLY B 93 CA GLY B 93 C 0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 53 CG - CD - OE1 ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 102 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 63 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 63 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP B 66 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 67 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 73 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 73 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP B 74 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 74 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 SER B 78 CA - C - N ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG B 102 CD - NE - CZ ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG B 102 NE - CZ - NH1 ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG B 102 NE - CZ - NH2 ANGL. DEV. = -12.7 DEGREES REMARK 500 GLN B 118 N - CA - C ANGL. DEV. = -20.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER B 78 -18.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K28 RELATED DB: PDB DBREF 5K26 A 41 105 UNP Q16584 M3K11_HUMAN 41 105 DBREF 5K26 A 106 124 PDB 5K26 5K26 106 124 DBREF 5K26 B 41 105 UNP Q16584 M3K11_HUMAN 41 105 DBREF 5K26 B 106 124 PDB 5K26 5K26 106 124 SEQADV 5K26 HIS A 39 UNP Q16584 EXPRESSION TAG SEQADV 5K26 MET A 40 UNP Q16584 EXPRESSION TAG SEQADV 5K26 HIS B 39 UNP Q16584 EXPRESSION TAG SEQADV 5K26 MET B 40 UNP Q16584 EXPRESSION TAG SEQRES 1 A 86 HIS MET TYR ALA ASN PRO VAL TRP THR ALA LEU PHE ASP SEQRES 2 A 86 TYR GLU PRO SER GLY GLN ASP GLU LEU ALA LEU ARG LYS SEQRES 3 A 86 GLY ASP ARG VAL GLU VAL LEU SER ARG ASP ALA ALA ILE SEQRES 4 A 86 SER GLY ASP GLU GLY TRP TRP ALA GLY GLN VAL GLY GLY SEQRES 5 A 86 GLN VAL GLY ILE PHE PRO SER ASN TYR VAL SER ARG GLY SEQRES 6 A 86 GLY GLY ALA ILE ARG ILE ASN PRO ASN GLY THR TRP SER SEQRES 7 A 86 ARG GLN ALA GLU THR VAL GLU SER SEQRES 1 B 86 HIS MET TYR ALA ASN PRO VAL TRP THR ALA LEU PHE ASP SEQRES 2 B 86 TYR GLU PRO SER GLY GLN ASP GLU LEU ALA LEU ARG LYS SEQRES 3 B 86 GLY ASP ARG VAL GLU VAL LEU SER ARG ASP ALA ALA ILE SEQRES 4 B 86 SER GLY ASP GLU GLY TRP TRP ALA GLY GLN VAL GLY GLY SEQRES 5 B 86 GLN VAL GLY ILE PHE PRO SER ASN TYR VAL SER ARG GLY SEQRES 6 B 86 GLY GLY ALA ILE ARG ILE ASN PRO ASN GLY THR TRP SER SEQRES 7 B 86 ARG GLN ALA GLU THR VAL GLU SER HET MES A 201 12 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 MES C6 H13 N O4 S FORMUL 4 HOH *123(H2 O) HELIX 1 AA1 ILE A 77 GLU A 81 5 5 HELIX 2 AA2 ILE B 77 GLU B 81 5 5 SHEET 1 AA1 5 GLN A 91 PRO A 96 0 SHEET 2 AA1 5 TRP A 83 VAL A 88 -1 N GLY A 86 O GLY A 93 SHEET 3 AA1 5 ARG A 67 SER A 72 -1 N SER A 72 O ALA A 85 SHEET 4 AA1 5 VAL A 45 ALA A 48 -1 N TRP A 46 O VAL A 68 SHEET 5 AA1 5 VAL A 100 SER A 101 -1 O SER A 101 N THR A 47 SHEET 1 AA2 2 ILE A 107 ILE A 109 0 SHEET 2 AA2 2 TRP A 115 ARG A 117 -1 O SER A 116 N ARG A 108 SHEET 1 AA3 5 GLN B 91 PRO B 96 0 SHEET 2 AA3 5 TRP B 83 VAL B 88 -1 N GLY B 86 O GLY B 93 SHEET 3 AA3 5 ARG B 67 SER B 72 -1 N LEU B 71 O ALA B 85 SHEET 4 AA3 5 VAL B 45 ALA B 48 -1 N TRP B 46 O VAL B 68 SHEET 5 AA3 5 VAL B 100 ARG B 102 -1 O SER B 101 N THR B 47 SHEET 1 AA4 2 ILE B 107 ILE B 109 0 SHEET 2 AA4 2 TRP B 115 ARG B 117 -1 O SER B 116 N ARG B 108 SITE 1 AC1 8 ALA A 42 ARG A 73 ASP A 74 TRP A 84 SITE 2 AC1 8 HOH A 302 ASP B 51 TYR B 52 HOH B 231 CRYST1 64.000 64.000 35.200 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015625 0.009021 0.000000 0.00000 SCALE2 0.000000 0.018042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028409 0.00000