HEADER IMMUNE SYSTEM 19-MAY-16 5K33 TITLE CRYSTAL STRUCTURE OF EXTRACELLULAR DOMAIN OF HER2 IN COMPLEX WITH FCAB TITLE 2 STAB19 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-2; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: METASTATIC LYMPH NODE GENE 19 PROTEIN,MLN 19,PROTO-ONCOGENE COMPND 10 NEU,PROTO-ONCOGENE C-ERBB-2,TYROSINE KINASE-TYPE CELL SURFACE COMPND 11 RECEPTOR HER2,P185ERBB2; COMPND 12 EC: 2.7.10.1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 10 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: ERBB2, HER2, MLN19, NEU, NGL; SOURCE 17 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: RABBIT; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: CHO LEC1; SOURCE 21 EXPRESSION_SYSTEM_TISSUE: OVARY KEYWDS IMMUNE SYSTEM, ANTIBODY ENGINEERING, IMMUNOGLOBULIN G1, FC FRAGMENT, KEYWDS 2 GLYCOSYLATIONS, CH3 DOMAIN, FCAB, HUMAN EPIDERMAL GROWTH FACTOR KEYWDS 3 RECEPTOR 2, HER2/NEU, ERBB-2, CELL SURFACE RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR A.HUMM,E.LOBNER,K.GORITZER,G.MLYNEK,C.OBINGER,K.DJINOVIC-CARUGO REVDAT 7 09-OCT-24 5K33 1 REMARK REVDAT 6 10-JAN-24 5K33 1 HETSYN LINK REVDAT 5 29-JUL-20 5K33 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 16-AUG-17 5K33 1 REMARK REVDAT 3 14-JUN-17 5K33 1 JRNL REVDAT 2 31-MAY-17 5K33 1 JRNL REVDAT 1 12-APR-17 5K33 0 JRNL AUTH E.LOBNER,A.S.HUMM,K.GORITZER,G.MLYNEK,M.G.PUCHINGER, JRNL AUTH 2 C.HASENHINDL,F.RUKER,M.W.TRAXLMAYR,K.DJINOVIC-CARUGO, JRNL AUTH 3 C.OBINGER JRNL TITL FCAB-HER2 INTERACTION: A MENAGE A TROIS. LESSONS FROM X-RAY JRNL TITL 2 AND SOLUTION STUDIES. JRNL REF STRUCTURE V. 25 878 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28528777 JRNL DOI 10.1016/J.STR.2017.04.014 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10-2247 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0386 - 7.3308 1.00 1640 152 0.2055 0.2564 REMARK 3 2 7.3308 - 5.8221 1.00 1576 145 0.2276 0.2725 REMARK 3 3 5.8221 - 5.0872 1.00 1552 139 0.2028 0.2798 REMARK 3 4 5.0872 - 4.6225 1.00 1554 136 0.1778 0.2265 REMARK 3 5 4.6225 - 4.2914 1.00 1503 138 0.1739 0.2435 REMARK 3 6 4.2914 - 4.0385 1.00 1533 136 0.2009 0.2285 REMARK 3 7 4.0385 - 3.8364 1.00 1527 136 0.2320 0.2929 REMARK 3 8 3.8364 - 3.6694 1.00 1510 134 0.2727 0.3377 REMARK 3 9 3.6694 - 3.5282 1.00 1527 134 0.2798 0.3300 REMARK 3 10 3.5282 - 3.4065 1.00 1498 136 0.3082 0.3579 REMARK 3 11 3.4065 - 3.3000 1.00 1503 135 0.3250 0.3883 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 112.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6365 REMARK 3 ANGLE : 0.671 8692 REMARK 3 CHIRALITY : 0.045 988 REMARK 3 PLANARITY : 0.005 1117 REMARK 3 DIHEDRAL : 11.022 3881 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 237 THROUGH 340) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6227 -23.7460 16.0905 REMARK 3 T TENSOR REMARK 3 T11: 1.3617 T22: 1.6082 REMARK 3 T33: 1.5611 T12: -0.2615 REMARK 3 T13: 0.0082 T23: 0.2457 REMARK 3 L TENSOR REMARK 3 L11: 0.6106 L22: 0.2252 REMARK 3 L33: 0.3524 L12: -0.2963 REMARK 3 L13: -0.4422 L23: 0.2701 REMARK 3 S TENSOR REMARK 3 S11: 0.1023 S12: -0.4022 S13: -0.3371 REMARK 3 S21: -0.0683 S22: -0.0627 S23: 0.1624 REMARK 3 S31: 0.0984 S32: 0.2262 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1 THROUGH 575) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3323 45.3929 32.6917 REMARK 3 T TENSOR REMARK 3 T11: 0.7461 T22: 0.8757 REMARK 3 T33: 0.8865 T12: -0.0491 REMARK 3 T13: 0.0893 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 1.4826 L22: 1.1552 REMARK 3 L33: 1.9090 L12: -0.1380 REMARK 3 L13: 0.0835 L23: 0.7779 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: -0.2537 S13: -0.0320 REMARK 3 S21: 0.0498 S22: -0.0317 S23: -0.0496 REMARK 3 S31: 0.1544 S32: -0.0040 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 341 THROUGH 444) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7293 0.1304 7.2533 REMARK 3 T TENSOR REMARK 3 T11: 1.0661 T22: 1.1432 REMARK 3 T33: 1.2325 T12: -0.3897 REMARK 3 T13: -0.1169 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 0.6677 L22: 0.4647 REMARK 3 L33: 0.1000 L12: 0.1820 REMARK 3 L13: 0.2122 L23: 0.1741 REMARK 3 S TENSOR REMARK 3 S11: 0.2042 S12: -0.5381 S13: -0.2550 REMARK 3 S21: 0.5500 S22: -0.1881 S23: 0.2040 REMARK 3 S31: 0.2596 S32: -0.7591 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : C(110) REMARK 200 OPTICS : CRL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XDS V.OCT-2015 REMARK 200 DATA SCALING SOFTWARE : XDS XDS V.OCT-2015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18446 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.034 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.14220 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.65200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.10-2247 REMARK 200 STARTING MODEL: 5JIH, 1N8Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M MES, 10% W/V PEG3350, PH 6.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.22667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.11333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.11333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 116.22667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 ASN C 103 REMARK 465 THR C 104 REMARK 465 THR C 105 REMARK 465 PRO C 106 REMARK 465 VAL C 107 REMARK 465 GLU C 303 REMARK 465 ASP C 304 REMARK 465 GLY C 305 REMARK 465 ALA C 364 REMARK 465 SER C 365 REMARK 465 ASN C 366 REMARK 465 TYR C 568 REMARK 465 LYS C 569 REMARK 465 ARG C 577 REMARK 465 CYS C 578 REMARK 465 PRO C 579 REMARK 465 SER C 580 REMARK 465 GLY C 581 REMARK 465 VAL C 582 REMARK 465 LYS C 583 REMARK 465 PRO C 584 REMARK 465 ASP C 585 REMARK 465 LEU C 586 REMARK 465 SER C 587 REMARK 465 TYR C 588 REMARK 465 MET C 589 REMARK 465 PRO C 590 REMARK 465 ILE C 591 REMARK 465 TRP C 592 REMARK 465 LYS C 593 REMARK 465 PHE C 594 REMARK 465 PRO C 595 REMARK 465 ASP C 596 REMARK 465 GLU C 597 REMARK 465 GLU C 598 REMARK 465 GLY C 599 REMARK 465 ALA C 600 REMARK 465 CYS C 601 REMARK 465 GLN C 602 REMARK 465 PRO C 603 REMARK 465 CYS C 604 REMARK 465 PRO C 605 REMARK 465 ILE C 606 REMARK 465 ASN C 607 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS C 509 SG CYS C 518 0.87 REMARK 500 O GLN C 134 ND2 ASN C 136 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 238 174.62 -57.49 REMARK 500 SER A 360 -169.06 -62.31 REMARK 500 TYR A 373 131.97 -172.18 REMARK 500 GLU A 382 143.76 -172.36 REMARK 500 ASP C 8 44.39 -144.22 REMARK 500 LYS C 10 99.31 -14.75 REMARK 500 ASN C 46 46.48 -83.92 REMARK 500 LEU C 74 54.31 -113.00 REMARK 500 ASN C 89 -38.66 -165.42 REMARK 500 ASP C 96 -123.44 64.88 REMARK 500 ASN C 97 61.18 74.26 REMARK 500 SER C 111 157.52 88.48 REMARK 500 LEU C 123 95.12 -64.96 REMARK 500 LEU C 127 -71.72 -59.52 REMARK 500 ARG C 135 -118.55 67.89 REMARK 500 GLN C 138 -3.38 88.68 REMARK 500 LEU C 146 78.38 60.06 REMARK 500 ALA C 158 136.06 -37.02 REMARK 500 VAL C 197 36.65 -143.96 REMARK 500 ALA C 220 -54.68 73.92 REMARK 500 HIS C 235 -60.22 -130.87 REMARK 500 ALA C 271 47.74 -109.90 REMARK 500 ASN C 280 -15.41 78.99 REMARK 500 HIS C 296 -2.19 83.34 REMARK 500 GLU C 326 -135.79 45.32 REMARK 500 ASP C 362 73.90 -163.61 REMARK 500 PHE C 403 30.73 -96.86 REMARK 500 ALA C 418 -43.34 -130.82 REMARK 500 THR C 474 148.85 -170.18 REMARK 500 GLU C 485 -10.65 90.48 REMARK 500 ARG C 495 12.42 55.56 REMARK 500 GLN C 511 -91.85 -112.46 REMARK 500 LEU C 525 77.68 61.07 REMARK 500 GLN C 526 26.75 82.55 REMARK 500 ASN C 534 100.17 -161.83 REMARK 500 ASN C 549 -102.13 -62.90 REMARK 500 CYS C 574 -77.35 -128.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 5K33 A 225 446 UNP P01857 IGHG1_HUMAN 108 329 DBREF 5K33 C 1 607 UNP P04626 ERBB2_HUMAN 23 629 SEQADV 5K33 TYR A 358 UNP P01857 LEU 241 ENGINEERED MUTATION SEQADV 5K33 LEU A 359 UNP P01857 THR 242 ENGINEERED MUTATION SEQADV 5K33 SER A 360 UNP P01857 LYS 243 ENGINEERED MUTATION SEQADV 5K33 ASP A 361 UNP P01857 ASN 244 ENGINEERED MUTATION SEQADV 5K33 SER A 362 UNP P01857 GLN 245 ENGINEERED MUTATION SEQADV 5K33 PRO A 413 UNP P01857 INSERTION SEQADV 5K33 ARG A 414 UNP P01857 INSERTION SEQADV 5K33 HIS A 415 UNP P01857 INSERTION SEQADV 5K33 SER A 415A UNP P01857 INSERTION SEQADV 5K33 GLU A 415B UNP P01857 INSERTION SEQADV 5K33 THR A 415C UNP P01857 ASP 296 ENGINEERED MUTATION SEQADV 5K33 MET A 415D UNP P01857 LYS 297 ENGINEERED MUTATION SEQADV 5K33 ARG A 415E UNP P01857 SER 298 ENGINEERED MUTATION SEQADV 5K33 ALA A 418 UNP P01857 GLN 301 ENGINEERED MUTATION SEQADV 5K33 HIS A 419 UNP P01857 GLN 302 ENGINEERED MUTATION SEQRES 1 A 227 THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY SEQRES 2 A 227 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 3 A 227 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 4 A 227 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 5 A 227 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 6 A 227 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 7 A 227 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 8 A 227 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 9 A 227 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 10 A 227 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 11 A 227 ARG ASP GLU TYR LEU SER ASP SER VAL SER LEU THR CYS SEQRES 12 A 227 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 13 A 227 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 14 A 227 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 15 A 227 TYR SER LYS LEU THR VAL PRO ARG HIS SER GLU THR MET SEQRES 16 A 227 ARG ARG TRP ALA HIS GLY ASN VAL PHE SER CYS SER VAL SEQRES 17 A 227 MET HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER SEQRES 18 A 227 LEU SER LEU SER PRO GLY SEQRES 1 C 607 THR GLN VAL CYS THR GLY THR ASP MET LYS LEU ARG LEU SEQRES 2 C 607 PRO ALA SER PRO GLU THR HIS LEU ASP MET LEU ARG HIS SEQRES 3 C 607 LEU TYR GLN GLY CYS GLN VAL VAL GLN GLY ASN LEU GLU SEQRES 4 C 607 LEU THR TYR LEU PRO THR ASN ALA SER LEU SER PHE LEU SEQRES 5 C 607 GLN ASP ILE GLN GLU VAL GLN GLY TYR VAL LEU ILE ALA SEQRES 6 C 607 HIS ASN GLN VAL ARG GLN VAL PRO LEU GLN ARG LEU ARG SEQRES 7 C 607 ILE VAL ARG GLY THR GLN LEU PHE GLU ASP ASN TYR ALA SEQRES 8 C 607 LEU ALA VAL LEU ASP ASN GLY ASP PRO LEU ASN ASN THR SEQRES 9 C 607 THR PRO VAL THR GLY ALA SER PRO GLY GLY LEU ARG GLU SEQRES 10 C 607 LEU GLN LEU ARG SER LEU THR GLU ILE LEU LYS GLY GLY SEQRES 11 C 607 VAL LEU ILE GLN ARG ASN PRO GLN LEU CYS TYR GLN ASP SEQRES 12 C 607 THR ILE LEU TRP LYS ASP ILE PHE HIS LYS ASN ASN GLN SEQRES 13 C 607 LEU ALA LEU THR LEU ILE ASP THR ASN ARG SER ARG ALA SEQRES 14 C 607 CYS HIS PRO CYS SER PRO MET CYS LYS GLY SER ARG CYS SEQRES 15 C 607 TRP GLY GLU SER SER GLU ASP CYS GLN SER LEU THR ARG SEQRES 16 C 607 THR VAL CYS ALA GLY GLY CYS ALA ARG CYS LYS GLY PRO SEQRES 17 C 607 LEU PRO THR ASP CYS CYS HIS GLU GLN CYS ALA ALA GLY SEQRES 18 C 607 CYS THR GLY PRO LYS HIS SER ASP CYS LEU ALA CYS LEU SEQRES 19 C 607 HIS PHE ASN HIS SER GLY ILE CYS GLU LEU HIS CYS PRO SEQRES 20 C 607 ALA LEU VAL THR TYR ASN THR ASP THR PHE GLU SER MET SEQRES 21 C 607 PRO ASN PRO GLU GLY ARG TYR THR PHE GLY ALA SER CYS SEQRES 22 C 607 VAL THR ALA CYS PRO TYR ASN TYR LEU SER THR ASP VAL SEQRES 23 C 607 GLY SER CYS THR LEU VAL CYS PRO LEU HIS ASN GLN GLU SEQRES 24 C 607 VAL THR ALA GLU ASP GLY THR GLN ARG CYS GLU LYS CYS SEQRES 25 C 607 SER LYS PRO CYS ALA ARG VAL CYS TYR GLY LEU GLY MET SEQRES 26 C 607 GLU HIS LEU ARG GLU VAL ARG ALA VAL THR SER ALA ASN SEQRES 27 C 607 ILE GLN GLU PHE ALA GLY CYS LYS LYS ILE PHE GLY SER SEQRES 28 C 607 LEU ALA PHE LEU PRO GLU SER PHE ASP GLY ASP PRO ALA SEQRES 29 C 607 SER ASN THR ALA PRO LEU GLN PRO GLU GLN LEU GLN VAL SEQRES 30 C 607 PHE GLU THR LEU GLU GLU ILE THR GLY TYR LEU TYR ILE SEQRES 31 C 607 SER ALA TRP PRO ASP SER LEU PRO ASP LEU SER VAL PHE SEQRES 32 C 607 GLN ASN LEU GLN VAL ILE ARG GLY ARG ILE LEU HIS ASN SEQRES 33 C 607 GLY ALA TYR SER LEU THR LEU GLN GLY LEU GLY ILE SER SEQRES 34 C 607 TRP LEU GLY LEU ARG SER LEU ARG GLU LEU GLY SER GLY SEQRES 35 C 607 LEU ALA LEU ILE HIS HIS ASN THR HIS LEU CYS PHE VAL SEQRES 36 C 607 HIS THR VAL PRO TRP ASP GLN LEU PHE ARG ASN PRO HIS SEQRES 37 C 607 GLN ALA LEU LEU HIS THR ALA ASN ARG PRO GLU ASP GLU SEQRES 38 C 607 CYS VAL GLY GLU GLY LEU ALA CYS HIS GLN LEU CYS ALA SEQRES 39 C 607 ARG GLY HIS CYS TRP GLY PRO GLY PRO THR GLN CYS VAL SEQRES 40 C 607 ASN CYS SER GLN PHE LEU ARG GLY GLN GLU CYS VAL GLU SEQRES 41 C 607 GLU CYS ARG VAL LEU GLN GLY LEU PRO ARG GLU TYR VAL SEQRES 42 C 607 ASN ALA ARG HIS CYS LEU PRO CYS HIS PRO GLU CYS GLN SEQRES 43 C 607 PRO GLN ASN GLY SER VAL THR CYS PHE GLY PRO GLU ALA SEQRES 44 C 607 ASP GLN CYS VAL ALA CYS ALA HIS TYR LYS ASP PRO PRO SEQRES 45 C 607 PHE CYS VAL ALA ARG CYS PRO SER GLY VAL LYS PRO ASP SEQRES 46 C 607 LEU SER TYR MET PRO ILE TRP LYS PHE PRO ASP GLU GLU SEQRES 47 C 607 GLY ALA CYS GLN PRO CYS PRO ILE ASN HET NAG B 1 27 HET NAG B 2 27 HET BMA B 3 20 HET MAN B 4 22 HET MAN B 5 22 HET NAG D 1 27 HET NAG D 2 27 HET BMA D 3 21 HET MAN D 4 22 HET GOL A 506 14 HET NAG C 705 28 HET NAG C 706 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 3(C6 H12 O6) FORMUL 5 GOL C3 H8 O3 HELIX 1 AA1 LYS A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 SER A 354 SER A 360 5 7 HELIX 4 AA4 SER A 415A HIS A 419 1 9 HELIX 5 AA5 LEU A 432 TYR A 436 5 5 HELIX 6 AA6 SER C 16 GLN C 29 1 14 HELIX 7 AA7 LEU C 49 ILE C 55 5 7 HELIX 8 AA8 LEU C 85 ASP C 88 5 4 HELIX 9 AA9 LEU C 146 ILE C 150 5 5 HELIX 10 AB1 SER C 186 CYS C 190 5 5 HELIX 11 AB2 MET C 325 ARG C 329 5 5 HELIX 12 AB3 ASN C 338 ALA C 343 5 6 HELIX 13 AB4 LEU C 355 ASP C 360 5 6 HELIX 14 AB5 GLU C 373 LEU C 381 5 9 HELIX 15 AB6 LEU C 400 GLN C 404 5 5 HELIX 16 AB7 LEU C 414 GLY C 417 5 4 HELIX 17 AB8 PRO C 459 PHE C 464 1 6 HELIX 18 AB9 PRO C 478 GLY C 484 1 7 HELIX 19 AC1 CYS C 493 HIS C 497 5 5 HELIX 20 AC2 GLY C 502 CYS C 506 5 5 HELIX 21 AC3 GLU C 558 CYS C 562 5 5 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 VAL A 266 -1 O THR A 260 N PHE A 243 SHEET 3 AA1 4 TYR A 300 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 AA1 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 AA2 4 VAL A 282 GLU A 283 0 SHEET 2 AA2 4 LYS A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA2 4 TYR A 319 SER A 324 -1 O LYS A 322 N ASN A 276 SHEET 4 AA2 4 ILE A 332 ILE A 336 -1 O ILE A 336 N TYR A 319 SHEET 1 AA3 4 GLN A 347 LEU A 351 0 SHEET 2 AA3 4 SER A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA3 4 PHE A 404 PRO A 413 -1 O VAL A 412 N VAL A 363 SHEET 4 AA3 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 SER A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA4 4 PHE A 404 PRO A 413 -1 O VAL A 412 N VAL A 363 SHEET 4 AA4 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA5 4 GLN A 386 GLU A 388 0 SHEET 2 AA5 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA5 4 PHE A 423 MET A 428 -1 O SER A 424 N GLU A 382 SHEET 4 AA5 4 THR A 437 LEU A 441 -1 O LYS A 439 N CYS A 425 SHEET 1 AA6 5 VAL C 3 THR C 5 0 SHEET 2 AA6 5 VAL C 33 GLN C 35 1 O GLN C 35 N CYS C 4 SHEET 3 AA6 5 GLU C 57 VAL C 58 1 O GLU C 57 N VAL C 34 SHEET 4 AA6 5 ILE C 79 VAL C 80 1 O ILE C 79 N VAL C 58 SHEET 5 AA6 5 GLU C 125 ILE C 126 1 O GLU C 125 N VAL C 80 SHEET 1 AA7 5 LEU C 38 THR C 41 0 SHEET 2 AA7 5 VAL C 62 ALA C 65 1 O LEU C 63 N LEU C 40 SHEET 3 AA7 5 TYR C 90 ASP C 96 1 O ALA C 93 N ILE C 64 SHEET 4 AA7 5 GLY C 130 ARG C 135 1 O LEU C 132 N VAL C 94 SHEET 5 AA7 5 THR C 160 ILE C 162 1 O LEU C 161 N ILE C 133 SHEET 1 AA8 2 CYS C 218 CYS C 222 0 SHEET 2 AA8 2 CYS C 230 CYS C 233 -1 O LEU C 231 N GLY C 221 SHEET 1 AA9 2 PHE C 236 HIS C 238 0 SHEET 2 AA9 2 ILE C 241 GLU C 243 -1 O ILE C 241 N HIS C 238 SHEET 1 AB1 2 VAL C 250 TYR C 252 0 SHEET 2 AB1 2 SER C 259 PRO C 261 -1 O MET C 260 N THR C 251 SHEET 1 AB2 2 TYR C 267 PHE C 269 0 SHEET 2 AB2 2 SER C 272 VAL C 274 -1 O SER C 272 N PHE C 269 SHEET 1 AB3 2 LEU C 282 SER C 283 0 SHEET 2 AB3 2 CYS C 289 THR C 290 -1 O THR C 290 N LEU C 282 SHEET 1 AB4 2 ASN C 297 VAL C 300 0 SHEET 2 AB4 2 ARG C 308 LYS C 311 -1 O ARG C 308 N VAL C 300 SHEET 1 AB5 5 CYS C 320 TYR C 321 0 SHEET 2 AB5 5 LYS C 347 PHE C 349 1 O PHE C 349 N CYS C 320 SHEET 3 AB5 5 GLU C 383 ILE C 384 1 O GLU C 383 N ILE C 348 SHEET 4 AB5 5 VAL C 408 ILE C 409 1 O VAL C 408 N ILE C 384 SHEET 5 AB5 5 GLU C 438 LEU C 439 1 O GLU C 438 N ILE C 409 SHEET 1 AB6 5 LEU C 352 PHE C 354 0 SHEET 2 AB6 5 LEU C 388 ILE C 390 1 O TYR C 389 N LEU C 352 SHEET 3 AB6 5 TYR C 419 GLN C 424 1 O SER C 420 N LEU C 388 SHEET 4 AB6 5 LEU C 443 HIS C 447 1 O LEU C 445 N LEU C 421 SHEET 5 AB6 5 LEU C 471 THR C 474 1 O LEU C 472 N ALA C 444 SHEET 1 AB7 2 PHE C 512 ARG C 514 0 SHEET 2 AB7 2 GLU C 517 VAL C 519 -1 O VAL C 519 N PHE C 512 SHEET 1 AB8 2 GLU C 531 VAL C 533 0 SHEET 2 AB8 2 CYS C 538 PRO C 540 -1 O LEU C 539 N TYR C 532 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.04 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.03 SSBOND 3 CYS C 4 CYS C 31 1555 1555 2.04 SSBOND 4 CYS C 140 CYS C 170 1555 1555 2.04 SSBOND 5 CYS C 173 CYS C 182 1555 1555 2.04 SSBOND 6 CYS C 177 CYS C 190 1555 1555 2.04 SSBOND 7 CYS C 198 CYS C 205 1555 1555 2.04 SSBOND 8 CYS C 202 CYS C 213 1555 1555 2.03 SSBOND 9 CYS C 214 CYS C 222 1555 1555 2.03 SSBOND 10 CYS C 218 CYS C 230 1555 1555 2.03 SSBOND 11 CYS C 233 CYS C 242 1555 1555 2.03 SSBOND 12 CYS C 246 CYS C 273 1555 1555 2.03 SSBOND 13 CYS C 277 CYS C 289 1555 1555 2.04 SSBOND 14 CYS C 293 CYS C 309 1555 1555 2.03 SSBOND 15 CYS C 312 CYS C 316 1555 1555 2.03 SSBOND 16 CYS C 320 CYS C 345 1555 1555 2.04 SSBOND 17 CYS C 453 CYS C 482 1555 1555 2.04 SSBOND 18 CYS C 489 CYS C 498 1555 1555 2.03 SSBOND 19 CYS C 493 CYS C 506 1555 1555 2.04 SSBOND 20 CYS C 509 CYS C 518 1555 1555 2.04 SSBOND 21 CYS C 522 CYS C 538 1555 1555 2.03 SSBOND 22 CYS C 541 CYS C 554 1555 1555 2.04 SSBOND 23 CYS C 545 CYS C 562 1555 1555 2.03 SSBOND 24 CYS C 565 CYS C 574 1555 1555 2.03 LINK ND2 ASN A 297 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN C 165 C1 NAG C 706 1555 1555 1.44 LINK ND2 ASN C 237 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN C 549 C1 NAG C 705 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.46 LINK O6 BMA B 3 C1 MAN B 5 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.47 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.45 CISPEP 1 TYR A 373 PRO A 374 0 0.92 CRYST1 108.620 108.620 174.340 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009206 0.005315 0.000000 0.00000 SCALE2 0.000000 0.010631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005736 0.00000