HEADER LIGASE 19-MAY-16 5K3Q TITLE RHESUS MACAQUES TRIM5ALPHA BBOX2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPARTITE MOTIF-CONTAINING PROTEIN 5,TRIPARTITE MOTIF- COMPND 3 CONTAINING PROTEIN 5; COMPND 4 CHAIN: A, B, C, D; COMPND 5 SYNONYM: TRIM5ALPHA,TRIM5ALPHA; COMPND 6 EC: 6.3.2.-,6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_COMMON: RHESUS MACAQUE; SOURCE 4 ORGANISM_TAXID: 9544; SOURCE 5 GENE: TRIM5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC FINGER BBOX2 ANTIRETROVIRAL, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.K.KEOWN,D.C.GOLDSTONE REVDAT 5 06-MAR-24 5K3Q 1 REMARK REVDAT 4 01-NOV-17 5K3Q 1 JRNL REMARK REVDAT 3 24-AUG-16 5K3Q 1 JRNL REVDAT 2 27-JUL-16 5K3Q 1 JRNL REVDAT 1 20-JUL-16 5K3Q 0 JRNL AUTH J.R.KEOWN,D.C.GOLDSTONE JRNL TITL CRYSTAL STRUCTURE OF THE TRIM5 ALPHA BBOX2 DOMAIN FROM JRNL TITL 2 RHESUS MACAQUES DESCRIBES A PLASTIC OLIGOMERISATION JRNL TITL 3 INTERFACE. JRNL REF J.STRUCT.BIOL. V. 195 282 2016 JRNL REFN ESSN 1095-8657 JRNL PMID 27402535 JRNL DOI 10.1016/J.JSB.2016.07.004 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 873 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1357 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.77000 REMARK 3 B33 (A**2) : 1.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.250 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.622 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5K3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16550 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.90700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX 2006/3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: 100 MICRON RECTANGULAR PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% (W/V) PE3350, 0.4 M LINO3, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.27800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER CONFIRMED ANALYTICAL ULTRACENTRIFUGATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 GLY A 93 REMARK 465 ALA A 137 REMARK 465 GLN A 138 REMARK 465 GLU A 139 REMARK 465 TYR A 140 REMARK 465 HIS A 141 REMARK 465 VAL A 142 REMARK 465 LYS A 143 REMARK 465 LEU A 144 REMARK 465 GLN A 145 REMARK 465 THR A 146 REMARK 465 ALA A 147 REMARK 465 LEU A 148 REMARK 465 GLU A 149 REMARK 465 MET A 150 REMARK 465 LEU A 151 REMARK 465 ARG A 152 REMARK 465 GLN A 153 REMARK 465 LYS A 154 REMARK 465 GLY A 155 REMARK 465 GLY A 156 REMARK 465 ASP A 157 REMARK 465 PRO A 158 REMARK 465 TYR A 159 REMARK 465 MET A 160 REMARK 465 ARG A 161 REMARK 465 GLU A 162 REMARK 465 LEU A 163 REMARK 465 ILE A 164 REMARK 465 SER A 165 REMARK 465 GLU A 166 REMARK 465 LEU A 167 REMARK 465 GLU A 168 REMARK 465 HIS A 169 REMARK 465 ARG A 170 REMARK 465 LEU A 171 REMARK 465 GLN A 172 REMARK 465 GLY A 173 REMARK 465 SER A 174 REMARK 465 MET A 175 REMARK 465 MET A 176 REMARK 465 ASP A 177 REMARK 465 LEU A 178 REMARK 465 LEU A 179 REMARK 465 GLN A 180 REMARK 465 GLY A 181 REMARK 465 VAL A 182 REMARK 465 ASP A 183 REMARK 465 GLY A 184 REMARK 465 ILE A 185 REMARK 465 ILE A 186 REMARK 465 LYS A 187 REMARK 465 ARG A 188 REMARK 465 ILE A 189 REMARK 465 GLU A 190 REMARK 465 ASN A 191 REMARK 465 GLY B 91 REMARK 465 PRO B 92 REMARK 465 VAL B 136 REMARK 465 ALA B 137 REMARK 465 GLN B 138 REMARK 465 GLU B 139 REMARK 465 TYR B 140 REMARK 465 HIS B 141 REMARK 465 VAL B 142 REMARK 465 LYS B 143 REMARK 465 LEU B 144 REMARK 465 GLN B 145 REMARK 465 THR B 146 REMARK 465 ALA B 147 REMARK 465 LEU B 148 REMARK 465 GLU B 149 REMARK 465 MET B 150 REMARK 465 LEU B 151 REMARK 465 ARG B 152 REMARK 465 GLN B 153 REMARK 465 LYS B 154 REMARK 465 GLY B 155 REMARK 465 GLY B 156 REMARK 465 ASP B 157 REMARK 465 PRO B 158 REMARK 465 TYR B 159 REMARK 465 MET B 160 REMARK 465 ARG B 161 REMARK 465 GLU B 162 REMARK 465 LEU B 163 REMARK 465 ILE B 164 REMARK 465 SER B 165 REMARK 465 GLU B 166 REMARK 465 LEU B 167 REMARK 465 GLU B 168 REMARK 465 HIS B 169 REMARK 465 ARG B 170 REMARK 465 LEU B 171 REMARK 465 GLN B 172 REMARK 465 GLY B 173 REMARK 465 SER B 174 REMARK 465 MET B 175 REMARK 465 MET B 176 REMARK 465 ASP B 177 REMARK 465 LEU B 178 REMARK 465 LEU B 179 REMARK 465 GLN B 180 REMARK 465 GLY B 181 REMARK 465 VAL B 182 REMARK 465 ASP B 183 REMARK 465 GLY B 184 REMARK 465 ILE B 185 REMARK 465 ILE B 186 REMARK 465 LYS B 187 REMARK 465 ARG B 188 REMARK 465 ILE B 189 REMARK 465 GLU B 190 REMARK 465 ASN B 191 REMARK 465 GLY C 91 REMARK 465 PRO C 92 REMARK 465 GLY C 93 REMARK 465 VAL C 136 REMARK 465 ALA C 137 REMARK 465 GLN C 138 REMARK 465 GLU C 139 REMARK 465 TYR C 140 REMARK 465 HIS C 141 REMARK 465 VAL C 142 REMARK 465 LYS C 143 REMARK 465 LEU C 144 REMARK 465 GLN C 145 REMARK 465 THR C 146 REMARK 465 ALA C 147 REMARK 465 LEU C 148 REMARK 465 GLU C 149 REMARK 465 MET C 150 REMARK 465 LEU C 151 REMARK 465 ARG C 152 REMARK 465 GLN C 153 REMARK 465 LYS C 154 REMARK 465 GLY C 155 REMARK 465 GLY C 156 REMARK 465 ASP C 157 REMARK 465 PRO C 158 REMARK 465 TYR C 159 REMARK 465 MET C 160 REMARK 465 ARG C 161 REMARK 465 GLU C 162 REMARK 465 LEU C 163 REMARK 465 ILE C 164 REMARK 465 SER C 165 REMARK 465 GLU C 166 REMARK 465 LEU C 167 REMARK 465 GLU C 168 REMARK 465 HIS C 169 REMARK 465 ARG C 170 REMARK 465 LEU C 171 REMARK 465 GLN C 172 REMARK 465 GLY C 173 REMARK 465 SER C 174 REMARK 465 MET C 175 REMARK 465 MET C 176 REMARK 465 ASP C 177 REMARK 465 LEU C 178 REMARK 465 LEU C 179 REMARK 465 GLN C 180 REMARK 465 GLY C 181 REMARK 465 VAL C 182 REMARK 465 ASP C 183 REMARK 465 GLY C 184 REMARK 465 ILE C 185 REMARK 465 ILE C 186 REMARK 465 LYS C 187 REMARK 465 ARG C 188 REMARK 465 ILE C 189 REMARK 465 GLU C 190 REMARK 465 ASN C 191 REMARK 465 GLY D 91 REMARK 465 PRO D 92 REMARK 465 GLY D 93 REMARK 465 GLU D 135 REMARK 465 VAL D 136 REMARK 465 ALA D 137 REMARK 465 GLN D 138 REMARK 465 GLU D 139 REMARK 465 TYR D 140 REMARK 465 HIS D 141 REMARK 465 VAL D 142 REMARK 465 LYS D 143 REMARK 465 LEU D 144 REMARK 465 GLN D 145 REMARK 465 THR D 146 REMARK 465 ALA D 147 REMARK 465 LEU D 148 REMARK 465 GLU D 149 REMARK 465 MET D 150 REMARK 465 LEU D 151 REMARK 465 ARG D 152 REMARK 465 GLN D 153 REMARK 465 LYS D 154 REMARK 465 GLY D 155 REMARK 465 GLY D 156 REMARK 465 ASP D 157 REMARK 465 PRO D 158 REMARK 465 TYR D 159 REMARK 465 MET D 160 REMARK 465 ARG D 161 REMARK 465 GLU D 162 REMARK 465 LEU D 163 REMARK 465 ILE D 164 REMARK 465 SER D 165 REMARK 465 GLU D 166 REMARK 465 LEU D 167 REMARK 465 GLU D 168 REMARK 465 HIS D 169 REMARK 465 ARG D 170 REMARK 465 LEU D 171 REMARK 465 GLN D 172 REMARK 465 GLY D 173 REMARK 465 SER D 174 REMARK 465 MET D 175 REMARK 465 MET D 176 REMARK 465 ASP D 177 REMARK 465 LEU D 178 REMARK 465 LEU D 179 REMARK 465 GLN D 180 REMARK 465 GLY D 181 REMARK 465 VAL D 182 REMARK 465 ASP D 183 REMARK 465 GLY D 184 REMARK 465 ILE D 185 REMARK 465 ILE D 186 REMARK 465 LYS D 187 REMARK 465 ARG D 188 REMARK 465 ILE D 189 REMARK 465 GLU D 190 REMARK 465 ASN D 191 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 129 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 ARG B 99 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 123 CG CD OE1 NE2 REMARK 470 ARG B 126 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 GLU C 135 CG CD OE1 OE2 REMARK 470 ARG D 126 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 126 92.15 -68.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 HIS A 100 ND1 105.7 REMARK 620 3 CYS A 116 SG 119.4 101.3 REMARK 620 4 CYS A 119 SG 102.8 107.1 119.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 108 SG REMARK 620 2 ASP A 111 OD2 114.5 REMARK 620 3 HIS A 125 ND1 130.4 89.8 REMARK 620 4 HIS A 128 ND1 99.7 91.7 123.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 HIS B 100 ND1 105.1 REMARK 620 3 CYS B 116 SG 122.9 102.2 REMARK 620 4 CYS B 119 SG 100.1 105.4 119.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 108 SG REMARK 620 2 ASP B 111 OD2 115.0 REMARK 620 3 HIS B 125 ND1 139.9 79.6 REMARK 620 4 HIS B 128 ND1 87.2 98.4 129.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 97 SG REMARK 620 2 HIS C 100 ND1 96.7 REMARK 620 3 CYS C 116 SG 117.5 103.9 REMARK 620 4 CYS C 119 SG 102.5 111.6 121.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 108 SG REMARK 620 2 ASP C 111 OD2 124.5 REMARK 620 3 HIS C 125 ND1 129.6 77.4 REMARK 620 4 HIS C 128 ND1 108.7 101.8 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 97 SG REMARK 620 2 HIS D 100 ND1 103.7 REMARK 620 3 CYS D 116 SG 121.5 102.1 REMARK 620 4 CYS D 119 SG 102.4 106.8 118.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 108 SG REMARK 620 2 ASP D 111 OD2 117.5 REMARK 620 3 HIS D 125 ND1 127.2 90.0 REMARK 620 4 HIS D 128 ND1 102.2 96.2 119.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 202 REMARK 999 REMARK 999 SEQUENCE REMARK 999 WHILE NO PROTEASE IS PRESENT, THE AUTHORS ARE CONFIDENT THAT THE REMARK 999 CRYSTAL IS A FRAGMENT COMPRISING RESIDUES 94-136 OF THE ORIGINAL REMARK 999 CONSTRUCT. DBREF 5K3Q A 94 154 UNP Q0PF16 TRIM5_MACMU 94 154 DBREF 5K3Q A 159 191 UNP Q0PF16 TRIM5_MACMU 229 261 DBREF 5K3Q B 94 154 UNP Q0PF16 TRIM5_MACMU 94 154 DBREF 5K3Q B 159 191 UNP Q0PF16 TRIM5_MACMU 229 261 DBREF 5K3Q C 94 154 UNP Q0PF16 TRIM5_MACMU 94 154 DBREF 5K3Q C 159 191 UNP Q0PF16 TRIM5_MACMU 229 261 DBREF 5K3Q D 94 154 UNP Q0PF16 TRIM5_MACMU 94 154 DBREF 5K3Q D 159 191 UNP Q0PF16 TRIM5_MACMU 229 261 SEQADV 5K3Q GLY A 91 UNP Q0PF16 EXPRESSION TAG SEQADV 5K3Q PRO A 92 UNP Q0PF16 EXPRESSION TAG SEQADV 5K3Q GLY A 93 UNP Q0PF16 EXPRESSION TAG SEQADV 5K3Q GLY A 155 UNP Q0PF16 LINKER SEQADV 5K3Q GLY A 156 UNP Q0PF16 LINKER SEQADV 5K3Q ASP A 157 UNP Q0PF16 LINKER SEQADV 5K3Q PRO A 158 UNP Q0PF16 LINKER SEQADV 5K3Q GLY B 91 UNP Q0PF16 EXPRESSION TAG SEQADV 5K3Q PRO B 92 UNP Q0PF16 EXPRESSION TAG SEQADV 5K3Q GLY B 93 UNP Q0PF16 EXPRESSION TAG SEQADV 5K3Q GLY B 155 UNP Q0PF16 LINKER SEQADV 5K3Q GLY B 156 UNP Q0PF16 LINKER SEQADV 5K3Q ASP B 157 UNP Q0PF16 LINKER SEQADV 5K3Q PRO B 158 UNP Q0PF16 LINKER SEQADV 5K3Q GLY C 91 UNP Q0PF16 EXPRESSION TAG SEQADV 5K3Q PRO C 92 UNP Q0PF16 EXPRESSION TAG SEQADV 5K3Q GLY C 93 UNP Q0PF16 EXPRESSION TAG SEQADV 5K3Q GLY C 155 UNP Q0PF16 LINKER SEQADV 5K3Q GLY C 156 UNP Q0PF16 LINKER SEQADV 5K3Q ASP C 157 UNP Q0PF16 LINKER SEQADV 5K3Q PRO C 158 UNP Q0PF16 LINKER SEQADV 5K3Q GLY D 91 UNP Q0PF16 EXPRESSION TAG SEQADV 5K3Q PRO D 92 UNP Q0PF16 EXPRESSION TAG SEQADV 5K3Q GLY D 93 UNP Q0PF16 EXPRESSION TAG SEQADV 5K3Q GLY D 155 UNP Q0PF16 LINKER SEQADV 5K3Q GLY D 156 UNP Q0PF16 LINKER SEQADV 5K3Q ASP D 157 UNP Q0PF16 LINKER SEQADV 5K3Q PRO D 158 UNP Q0PF16 LINKER SEQRES 1 A 101 GLY PRO GLY VAL ASP HIS CYS ALA ARG HIS GLY GLU LYS SEQRES 2 A 101 LEU LEU LEU PHE CYS GLN GLU ASP SER LYS VAL ILE CYS SEQRES 3 A 101 TRP LEU CYS GLU ARG SER GLN GLU HIS ARG GLY HIS HIS SEQRES 4 A 101 THR PHE LEU MET GLU GLU VAL ALA GLN GLU TYR HIS VAL SEQRES 5 A 101 LYS LEU GLN THR ALA LEU GLU MET LEU ARG GLN LYS GLY SEQRES 6 A 101 GLY ASP PRO TYR MET ARG GLU LEU ILE SER GLU LEU GLU SEQRES 7 A 101 HIS ARG LEU GLN GLY SER MET MET ASP LEU LEU GLN GLY SEQRES 8 A 101 VAL ASP GLY ILE ILE LYS ARG ILE GLU ASN SEQRES 1 B 101 GLY PRO GLY VAL ASP HIS CYS ALA ARG HIS GLY GLU LYS SEQRES 2 B 101 LEU LEU LEU PHE CYS GLN GLU ASP SER LYS VAL ILE CYS SEQRES 3 B 101 TRP LEU CYS GLU ARG SER GLN GLU HIS ARG GLY HIS HIS SEQRES 4 B 101 THR PHE LEU MET GLU GLU VAL ALA GLN GLU TYR HIS VAL SEQRES 5 B 101 LYS LEU GLN THR ALA LEU GLU MET LEU ARG GLN LYS GLY SEQRES 6 B 101 GLY ASP PRO TYR MET ARG GLU LEU ILE SER GLU LEU GLU SEQRES 7 B 101 HIS ARG LEU GLN GLY SER MET MET ASP LEU LEU GLN GLY SEQRES 8 B 101 VAL ASP GLY ILE ILE LYS ARG ILE GLU ASN SEQRES 1 C 101 GLY PRO GLY VAL ASP HIS CYS ALA ARG HIS GLY GLU LYS SEQRES 2 C 101 LEU LEU LEU PHE CYS GLN GLU ASP SER LYS VAL ILE CYS SEQRES 3 C 101 TRP LEU CYS GLU ARG SER GLN GLU HIS ARG GLY HIS HIS SEQRES 4 C 101 THR PHE LEU MET GLU GLU VAL ALA GLN GLU TYR HIS VAL SEQRES 5 C 101 LYS LEU GLN THR ALA LEU GLU MET LEU ARG GLN LYS GLY SEQRES 6 C 101 GLY ASP PRO TYR MET ARG GLU LEU ILE SER GLU LEU GLU SEQRES 7 C 101 HIS ARG LEU GLN GLY SER MET MET ASP LEU LEU GLN GLY SEQRES 8 C 101 VAL ASP GLY ILE ILE LYS ARG ILE GLU ASN SEQRES 1 D 101 GLY PRO GLY VAL ASP HIS CYS ALA ARG HIS GLY GLU LYS SEQRES 2 D 101 LEU LEU LEU PHE CYS GLN GLU ASP SER LYS VAL ILE CYS SEQRES 3 D 101 TRP LEU CYS GLU ARG SER GLN GLU HIS ARG GLY HIS HIS SEQRES 4 D 101 THR PHE LEU MET GLU GLU VAL ALA GLN GLU TYR HIS VAL SEQRES 5 D 101 LYS LEU GLN THR ALA LEU GLU MET LEU ARG GLN LYS GLY SEQRES 6 D 101 GLY ASP PRO TYR MET ARG GLU LEU ILE SER GLU LEU GLU SEQRES 7 D 101 HIS ARG LEU GLN GLY SER MET MET ASP LEU LEU GLN GLY SEQRES 8 D 101 VAL ASP GLY ILE ILE LYS ARG ILE GLU ASN HET ZN A 201 1 HET ZN A 202 1 HET ZN B 201 1 HET ZN B 202 1 HET NO3 B 203 4 HET ZN C 201 1 HET ZN C 202 1 HET ZN D 201 1 HET ZN D 202 1 HETNAM ZN ZINC ION HETNAM NO3 NITRATE ION FORMUL 5 ZN 8(ZN 2+) FORMUL 9 NO3 N O3 1- FORMUL 14 HOH *81(H2 O) HELIX 1 AA1 CYS A 116 SER A 122 1 7 HELIX 2 AA2 GLN A 123 ARG A 126 5 4 HELIX 3 AA3 CYS B 116 SER B 122 1 7 HELIX 4 AA4 GLN B 123 ARG B 126 5 4 HELIX 5 AA5 CYS C 116 ARG C 121 1 6 HELIX 6 AA6 SER C 122 ARG C 126 5 5 HELIX 7 AA7 CYS D 116 SER D 122 1 7 HELIX 8 AA8 GLN D 123 ARG D 126 5 4 SHEET 1 AA1 3 LYS A 113 ILE A 115 0 SHEET 2 AA1 3 LEU A 106 CYS A 108 -1 N LEU A 106 O ILE A 115 SHEET 3 AA1 3 THR A 130 LEU A 132 -1 O PHE A 131 N PHE A 107 SHEET 1 AA2 3 LYS B 113 ILE B 115 0 SHEET 2 AA2 3 LEU B 106 CYS B 108 -1 N CYS B 108 O LYS B 113 SHEET 3 AA2 3 THR B 130 LEU B 132 -1 O PHE B 131 N PHE B 107 SHEET 1 AA3 3 LYS C 113 ILE C 115 0 SHEET 2 AA3 3 LEU C 106 CYS C 108 -1 N LEU C 106 O ILE C 115 SHEET 3 AA3 3 THR C 130 LEU C 132 -1 O PHE C 131 N PHE C 107 SHEET 1 AA4 3 LYS D 113 ILE D 115 0 SHEET 2 AA4 3 LEU D 106 CYS D 108 -1 N CYS D 108 O LYS D 113 SHEET 3 AA4 3 THR D 130 LEU D 132 -1 O PHE D 131 N PHE D 107 LINK SG CYS A 97 ZN ZN A 201 1555 1555 2.41 LINK ND1 HIS A 100 ZN ZN A 201 1555 1555 2.31 LINK SG CYS A 108 ZN ZN A 202 1555 1555 2.20 LINK OD2 ASP A 111 ZN ZN A 202 1555 1555 2.24 LINK SG CYS A 116 ZN ZN A 201 1555 1555 2.29 LINK SG CYS A 119 ZN ZN A 201 1555 1555 2.24 LINK ND1 HIS A 125 ZN ZN A 202 1555 1555 2.22 LINK ND1 HIS A 128 ZN ZN A 202 1555 1555 2.30 LINK SG CYS B 97 ZN ZN B 201 1555 1555 2.33 LINK ND1 HIS B 100 ZN ZN B 201 1555 1555 2.23 LINK SG CYS B 108 ZN ZN B 202 1555 1555 2.12 LINK OD2 ASP B 111 ZN ZN B 202 1555 1555 2.12 LINK SG CYS B 116 ZN ZN B 201 1555 1555 2.27 LINK SG CYS B 119 ZN ZN B 201 1555 1555 2.33 LINK ND1 HIS B 125 ZN ZN B 202 1555 1555 2.21 LINK ND1 HIS B 128 ZN ZN B 202 1555 1555 2.42 LINK SG CYS C 97 ZN ZN C 202 1555 1555 2.29 LINK ND1 HIS C 100 ZN ZN C 202 1555 1555 2.25 LINK SG CYS C 108 ZN ZN C 201 1555 1555 2.21 LINK OD2 ASP C 111 ZN ZN C 201 1555 1555 2.22 LINK SG CYS C 116 ZN ZN C 202 1555 1555 2.26 LINK SG CYS C 119 ZN ZN C 202 1555 1555 2.29 LINK ND1 HIS C 125 ZN ZN C 201 1555 1555 2.34 LINK ND1 HIS C 128 ZN ZN C 201 1555 1555 2.34 LINK SG CYS D 97 ZN ZN D 202 1555 1555 2.41 LINK ND1 HIS D 100 ZN ZN D 202 1555 1555 2.25 LINK SG CYS D 108 ZN ZN D 201 1555 1555 2.18 LINK OD2 ASP D 111 ZN ZN D 201 1555 1555 2.19 LINK SG CYS D 116 ZN ZN D 202 1555 1555 2.25 LINK SG CYS D 119 ZN ZN D 202 1555 1555 2.32 LINK ND1 HIS D 125 ZN ZN D 201 1555 1555 2.26 LINK ND1 HIS D 128 ZN ZN D 201 1555 1555 2.19 SITE 1 AC1 4 CYS A 97 HIS A 100 CYS A 116 CYS A 119 SITE 1 AC2 4 CYS A 108 ASP A 111 HIS A 125 HIS A 128 SITE 1 AC3 4 CYS B 97 HIS B 100 CYS B 116 CYS B 119 SITE 1 AC4 4 CYS B 108 ASP B 111 HIS B 125 HIS B 128 SITE 1 AC5 6 ALA A 98 LYS B 113 ILE B 115 CYS B 119 SITE 2 AC5 6 GLU B 124 HIS B 125 SITE 1 AC6 4 CYS C 108 ASP C 111 HIS C 125 HIS C 128 SITE 1 AC7 4 CYS C 97 HIS C 100 CYS C 116 CYS C 119 SITE 1 AC8 4 CYS D 108 ASP D 111 HIS D 125 HIS D 128 SITE 1 AC9 4 CYS D 97 HIS D 100 CYS D 116 CYS D 119 CRYST1 30.751 54.556 54.479 90.00 100.03 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032519 0.000000 0.005754 0.00000 SCALE2 0.000000 0.018330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018641 0.00000