HEADER TRANSFERASE 19-MAY-16 5K3S TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA ACETOHYDROXYACID SYNTHASE IN TITLE 2 COMPLEX WITH A PYRIMIDINYL-BENZOATE HERBICIDE, BISPYRIBAC-SODIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETOLACTATE SYNTHASE, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 86-667; COMPND 5 SYNONYM: ATALS,ACETOHYDROXY-ACID SYNTHASE,PROTEIN CHLORSULFURON COMPND 6 RESISTANT 1; COMPND 7 EC: 2.2.1.6; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ALS, AHAS, CSR1, TZP5, AT3G48560, T8P19.70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A(+) KEYWDS AHAS, ACETOHYDROXYACID SYNTHASE, ACETOLACTATE SYNTHASE, HERBICIDE, KEYWDS 2 BISPYRIBAC-SODIUM, THIAMIN DIPHOSPHATE, FAD, PYRIMIDINYL-BENZOATE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.D.GARCIA,T.LONHIENNE,L.W.GUDDAT REVDAT 6 30-OCT-24 5K3S 1 REMARK REVDAT 5 27-SEP-23 5K3S 1 LINK REVDAT 4 08-JAN-20 5K3S 1 REMARK REVDAT 3 27-SEP-17 5K3S 1 REMARK REVDAT 2 01-MAR-17 5K3S 1 JRNL REVDAT 1 08-FEB-17 5K3S 0 JRNL AUTH M.D.GARCIA,A.NOUWENS,T.G.LONHIENNE,L.W.GUDDAT JRNL TITL COMPREHENSIVE UNDERSTANDING OF ACETOHYDROXYACID SYNTHASE JRNL TITL 2 INHIBITION BY DIFFERENT HERBICIDE FAMILIES. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E1091 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28137884 JRNL DOI 10.1073/PNAS.1616142114 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 38248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0388 - 6.7471 0.98 3169 162 0.1271 0.1571 REMARK 3 2 6.7471 - 5.3589 0.97 2959 156 0.1462 0.1829 REMARK 3 3 5.3589 - 4.6825 0.96 2885 142 0.1270 0.1436 REMARK 3 4 4.6825 - 4.2548 0.95 2832 150 0.1282 0.1644 REMARK 3 5 4.2548 - 3.9501 0.92 2724 142 0.1535 0.2073 REMARK 3 6 3.9501 - 3.7174 0.93 2740 136 0.1675 0.1871 REMARK 3 7 3.7174 - 3.5313 0.94 2765 141 0.1780 0.2078 REMARK 3 8 3.5313 - 3.3776 0.95 2802 149 0.2114 0.2490 REMARK 3 9 3.3776 - 3.2477 0.95 2774 147 0.2208 0.2654 REMARK 3 10 3.2477 - 3.1356 0.93 2710 137 0.2636 0.3091 REMARK 3 11 3.1356 - 3.0376 0.92 2687 135 0.2848 0.3163 REMARK 3 12 3.0376 - 2.9508 0.92 2675 135 0.3025 0.3386 REMARK 3 13 2.9508 - 2.8731 0.91 2657 137 0.3587 0.5180 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4732 REMARK 3 ANGLE : 0.712 6447 REMARK 3 CHIRALITY : 0.023 709 REMARK 3 PLANARITY : 0.003 840 REMARK 3 DIHEDRAL : 13.608 1754 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 86.1549 -23.7123 -18.0310 REMARK 3 T TENSOR REMARK 3 T11: 0.4874 T22: 0.3263 REMARK 3 T33: 0.3792 T12: 0.0152 REMARK 3 T13: -0.0115 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 0.6138 L22: 1.1582 REMARK 3 L33: 1.2099 L12: -0.1273 REMARK 3 L13: -0.2988 L23: 0.0171 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: 0.2006 S13: -0.0904 REMARK 3 S21: -0.3053 S22: -0.0678 S23: 0.0307 REMARK 3 S31: 0.1677 S32: -0.0698 S33: 0.0493 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K3S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 42.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : 0.18300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.80 REMARK 200 R MERGE FOR SHELL (I) : 0.89700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YHY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM CITRATE, PEG 3350, FAD, REMARK 280 THDP, MAGNESIUM CHLORIDE, DTT, BISPYRIBAC, PH 8.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.59167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.18333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.59167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 123.18333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.59167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 123.18333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.59167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 123.18333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 179.71500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 179.71500 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 801 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 824 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 832 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 872 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 930 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 948 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 991 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1024 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1028 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1050 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 669 REMARK 465 HIS A 670 REMARK 465 HIS A 671 REMARK 465 HIS A 672 REMARK 465 HIS A 673 REMARK 465 HIS A 674 REMARK 465 HIS A 675 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 668 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1004 O HOH A 1068 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 376 O HOH A 846 11655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 158 -36.38 -140.14 REMARK 500 PRO A 210 68.45 -67.48 REMARK 500 GLU A 268 57.23 -111.39 REMARK 500 GLU A 268 56.13 -110.57 REMARK 500 ARG A 272 63.46 -111.60 REMARK 500 HIS A 347 -143.35 58.48 REMARK 500 GLN A 566 19.41 58.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 538 OD1 REMARK 620 2 ASN A 565 OD1 87.2 REMARK 620 3 HIS A 567 O 98.0 86.0 REMARK 620 4 TP9 A 704 O2B 164.6 101.1 95.5 REMARK 620 5 TP9 A 704 O2A 85.0 172.2 94.4 86.7 REMARK 620 6 HOH A 920 O 83.9 82.1 167.9 84.4 97.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6QL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TP9 A 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K2O RELATED DB: PDB DBREF 5K3S A 86 667 UNP P17597 ILVB_ARATH 86 667 SEQADV 5K3S LEU A 668 UNP P17597 EXPRESSION TAG SEQADV 5K3S GLU A 669 UNP P17597 EXPRESSION TAG SEQADV 5K3S HIS A 670 UNP P17597 EXPRESSION TAG SEQADV 5K3S HIS A 671 UNP P17597 EXPRESSION TAG SEQADV 5K3S HIS A 672 UNP P17597 EXPRESSION TAG SEQADV 5K3S HIS A 673 UNP P17597 EXPRESSION TAG SEQADV 5K3S HIS A 674 UNP P17597 EXPRESSION TAG SEQADV 5K3S HIS A 675 UNP P17597 EXPRESSION TAG SEQRES 1 A 590 THR PHE ILE SER ARG PHE ALA PRO ASP GLN PRO ARG LYS SEQRES 2 A 590 GLY ALA ASP ILE LEU VAL GLU ALA LEU GLU ARG GLN GLY SEQRES 3 A 590 VAL GLU THR VAL PHE ALA TYR PRO GLY GLY ALA SER MET SEQRES 4 A 590 GLU ILE HIS GLN ALA LEU THR ARG SER SER SER ILE ARG SEQRES 5 A 590 ASN VAL LEU PRO ARG HIS GLU GLN GLY GLY VAL PHE ALA SEQRES 6 A 590 ALA GLU GLY TYR ALA ARG SER SER GLY LYS PRO GLY ILE SEQRES 7 A 590 CYS ILE ALA THR SER GLY PRO GLY ALA THR ASN LEU VAL SEQRES 8 A 590 SER GLY LEU ALA ASP ALA LEU LEU ASP SER VAL PRO LEU SEQRES 9 A 590 VAL ALA ILE THR GLY GLN VAL PRO ARG ARG MET ILE GLY SEQRES 10 A 590 THR ASP ALA PHE GLN GLU THR PRO ILE VAL GLU VAL THR SEQRES 11 A 590 ARG SER ILE THR LYS HIS ASN TYR LEU VAL MET ASP VAL SEQRES 12 A 590 GLU ASP ILE PRO ARG ILE ILE GLU GLU ALA PHE PHE LEU SEQRES 13 A 590 ALA THR SER GLY ARG PRO GLY PRO VAL LEU VAL ASP VAL SEQRES 14 A 590 PRO LYS ASP ILE GLN GLN GLN LEU ALA ILE PRO ASN TRP SEQRES 15 A 590 GLU GLN ALA MET ARG LEU PRO GLY TYR MET SER ARG MET SEQRES 16 A 590 PRO LYS PRO PRO GLU ASP SER HIS LEU GLU GLN ILE VAL SEQRES 17 A 590 ARG LEU ILE SER GLU SER LYS LYS PRO VAL LEU TYR VAL SEQRES 18 A 590 GLY GLY GLY CYS LEU ASN SER SER ASP GLU LEU GLY ARG SEQRES 19 A 590 PHE VAL GLU LEU THR GLY ILE PRO VAL ALA SER THR LEU SEQRES 20 A 590 MET GLY LEU GLY SER TYR PRO CSD ASP ASP GLU LEU SER SEQRES 21 A 590 LEU HIS MET LEU GLY MET HIS GLY THR VAL TYR ALA ASN SEQRES 22 A 590 TYR ALA VAL GLU HIS SER ASP LEU LEU LEU ALA PHE GLY SEQRES 23 A 590 VAL ARG PHE ASP ASP ARG VAL THR GLY LYS LEU GLU ALA SEQRES 24 A 590 PHE ALA SER ARG ALA LYS ILE VAL HIS ILE ASP ILE ASP SEQRES 25 A 590 SER ALA GLU ILE GLY LYS ASN LYS THR PRO HIS VAL SER SEQRES 26 A 590 VAL CYS GLY ASP VAL LYS LEU ALA LEU GLN GLY MET ASN SEQRES 27 A 590 LYS VAL LEU GLU ASN ARG ALA GLU GLU LEU LYS LEU ASP SEQRES 28 A 590 PHE GLY VAL TRP ARG ASN GLU LEU ASN VAL GLN LYS GLN SEQRES 29 A 590 LYS PHE PRO LEU SER PHE LYS THR PHE GLY GLU ALA ILE SEQRES 30 A 590 PRO PRO GLN TYR ALA ILE LYS VAL LEU ASP GLU LEU THR SEQRES 31 A 590 ASP GLY LYS ALA ILE ILE SER THR GLY VAL GLY GLN HIS SEQRES 32 A 590 GLN MET TRP ALA ALA GLN PHE TYR ASN TYR LYS LYS PRO SEQRES 33 A 590 ARG GLN TRP LEU SER SER GLY GLY LEU GLY ALA MET GLY SEQRES 34 A 590 PHE GLY LEU PRO ALA ALA ILE GLY ALA SER VAL ALA ASN SEQRES 35 A 590 PRO ASP ALA ILE VAL VAL ASP ILE ASP GLY ASP GLY SER SEQRES 36 A 590 PHE ILE MET ASN VAL GLN GLU LEU ALA THR ILE ARG VAL SEQRES 37 A 590 GLU ASN LEU PRO VAL LYS VAL LEU LEU LEU ASN ASN GLN SEQRES 38 A 590 HIS LEU GLY MET VAL MET GLN TRP GLU ASP ARG PHE TYR SEQRES 39 A 590 LYS ALA ASN ARG ALA HIS THR PHE LEU GLY ASP PRO ALA SEQRES 40 A 590 GLN GLU ASP GLU ILE PHE PRO ASN MET LEU LEU PHE ALA SEQRES 41 A 590 ALA ALA CYS GLY ILE PRO ALA ALA ARG VAL THR LYS LYS SEQRES 42 A 590 ALA ASP LEU ARG GLU ALA ILE GLN THR MET LEU ASP THR SEQRES 43 A 590 PRO GLY PRO TYR LEU LEU ASP VAL ILE CYS PRO HIS GLN SEQRES 44 A 590 GLU HIS VAL LEU PRO MET ILE PRO SER GLY GLY THR PHE SEQRES 45 A 590 ASN ASP VAL ILE THR GLU GLY ASP GLY ARG LEU GLU HIS SEQRES 46 A 590 HIS HIS HIS HIS HIS MODRES 5K3S CSD A 340 CYS MODIFIED RESIDUE HET CSD A 340 8 HET MG A 701 1 HET FAD A 702 53 HET 6QL A 703 31 HET TP9 A 704 25 HETNAM CSD 3-SULFINOALANINE HETNAM MG MAGNESIUM ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 6QL 2,6-BIS[(4,6-DIMETHOXYPYRIMIDIN-2-YL)OXY]BENZOIC ACID HETNAM TP9 (3Z)-4-{[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]AMINO}- HETNAM 2 TP9 3-MERCAPTOPENT-3-EN-1-YL TRIHYDROGEN DIPHOSPHATE HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 MG MG 2+ FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 6QL C19 H18 N4 O8 FORMUL 5 TP9 C11 H18 N4 O7 P2 S 2- FORMUL 6 HOH *339(H2 O) HELIX 1 AA1 GLY A 99 ARG A 109 1 11 HELIX 2 AA2 GLY A 120 ALA A 122 5 3 HELIX 3 AA3 SER A 123 ARG A 132 1 10 HELIX 4 AA4 HIS A 143 SER A 157 1 15 HELIX 5 AA5 GLY A 169 ASN A 174 1 6 HELIX 6 AA6 LEU A 175 ASP A 185 1 11 HELIX 7 AA7 PRO A 197 ILE A 201 5 5 HELIX 8 AA8 PRO A 210 ARG A 216 1 7 HELIX 9 AA9 ASP A 227 GLU A 229 5 3 HELIX 10 AB1 ASP A 230 SER A 244 1 15 HELIX 11 AB2 LYS A 256 GLN A 261 1 6 HELIX 12 AB3 LEU A 273 ARG A 279 1 7 HELIX 13 AB4 GLU A 285 SER A 299 1 15 HELIX 14 AB5 GLY A 308 LEU A 311 5 4 HELIX 15 AB6 SER A 313 GLY A 325 1 13 HELIX 16 AB7 THR A 354 HIS A 363 1 10 HELIX 17 AB8 ASP A 375 GLY A 380 1 6 HELIX 18 AB9 LYS A 381 PHE A 385 5 5 HELIX 19 AC1 ASP A 414 ARG A 429 1 16 HELIX 20 AC2 ARG A 429 LYS A 434 1 6 HELIX 21 AC3 PHE A 437 PHE A 451 1 15 HELIX 22 AC4 PRO A 463 ASP A 476 1 14 HELIX 23 AC5 GLY A 486 PHE A 495 1 10 HELIX 24 AC6 PHE A 515 ASN A 527 1 13 HELIX 25 AC7 ASP A 538 ASN A 544 1 7 HELIX 26 AC8 GLN A 546 GLU A 554 1 9 HELIX 27 AC9 LEU A 568 TYR A 579 1 12 HELIX 28 AD1 ASP A 590 GLU A 594 5 5 HELIX 29 AD2 ASN A 600 CYS A 608 1 9 HELIX 30 AD3 LYS A 617 ALA A 619 5 3 HELIX 31 AD4 ASP A 620 THR A 631 1 12 HELIX 32 AD5 THR A 656 VAL A 660 5 5 SHEET 1 AA1 2 ARG A 97 LYS A 98 0 SHEET 2 AA1 2 LEU A 262 ALA A 263 -1 O ALA A 263 N ARG A 97 SHEET 1 AA2 6 ARG A 137 ASN A 138 0 SHEET 2 AA2 6 THR A 114 ALA A 117 1 N VAL A 115 O ARG A 137 SHEET 3 AA2 6 GLY A 162 ALA A 166 1 O ILE A 165 N PHE A 116 SHEET 4 AA2 6 LEU A 189 GLN A 195 1 O VAL A 190 N GLY A 162 SHEET 5 AA2 6 PRO A 249 PRO A 255 1 O VAL A 252 N ALA A 191 SHEET 6 AA2 6 HIS A 221 LEU A 224 1 N TYR A 223 O LEU A 251 SHEET 1 AA3 6 SER A 345 MET A 348 0 SHEET 2 AA3 6 VAL A 328 SER A 330 1 N VAL A 328 O LEU A 346 SHEET 3 AA3 6 PRO A 302 VAL A 306 1 N LEU A 304 O ALA A 329 SHEET 4 AA3 6 LEU A 366 PHE A 370 1 O LEU A 368 N TYR A 305 SHEET 5 AA3 6 LYS A 390 ASP A 395 1 O VAL A 392 N LEU A 367 SHEET 6 AA3 6 VAL A 409 CYS A 412 1 O VAL A 409 N HIS A 393 SHEET 1 AA4 6 TRP A 504 LEU A 505 0 SHEET 2 AA4 6 ILE A 480 THR A 483 1 N ILE A 481 O LEU A 505 SHEET 3 AA4 6 VAL A 532 GLY A 537 1 O VAL A 533 N ILE A 480 SHEET 4 AA4 6 VAL A 558 ASN A 564 1 O LYS A 559 N ASP A 534 SHEET 5 AA4 6 TYR A 635 ILE A 640 1 O VAL A 639 N ASN A 564 SHEET 6 AA4 6 ALA A 612 VAL A 615 1 N ALA A 613 O ASP A 638 LINK C PRO A 339 N CSD A 340 1555 1555 1.33 LINK C CSD A 340 N ASP A 341 1555 1555 1.33 LINK OD1 ASP A 538 MG MG A 701 1555 1555 2.12 LINK OD1 ASN A 565 MG MG A 701 1555 1555 2.12 LINK O HIS A 567 MG MG A 701 1555 1555 2.11 LINK MG MG A 701 O2B TP9 A 704 1555 1555 2.13 LINK MG MG A 701 O2A TP9 A 704 1555 1555 2.14 LINK MG MG A 701 O HOH A 920 1555 1555 2.19 CISPEP 1 PHE A 598 PRO A 599 0 -3.37 CISPEP 2 LEU A 648 PRO A 649 0 -2.79 SITE 1 AC1 5 ASP A 538 ASN A 565 HIS A 567 TP9 A 704 SITE 2 AC1 5 HOH A 920 SITE 1 AC2 34 PHE A 206 ARG A 246 GLY A 307 GLY A 308 SITE 2 AC2 34 GLY A 309 THR A 331 LEU A 332 MET A 333 SITE 3 AC2 34 LEU A 349 GLY A 350 MET A 351 HIS A 352 SITE 4 AC2 34 GLY A 371 ARG A 373 ASP A 375 ARG A 377 SITE 5 AC2 34 VAL A 378 ASP A 395 ILE A 396 ASP A 397 SITE 6 AC2 34 GLU A 400 GLY A 413 ASP A 414 VAL A 415 SITE 7 AC2 34 GLN A 489 MET A 490 GLY A 508 GLY A 509 SITE 8 AC2 34 6QL A 703 HOH A 813 HOH A 817 HOH A 825 SITE 9 AC2 34 HOH A 839 HOH A 850 SITE 1 AC3 16 GLY A 121 ALA A 122 PRO A 197 ARG A 199 SITE 2 AC3 16 MET A 200 PHE A 206 LYS A 256 GLN A 260 SITE 3 AC3 16 ASP A 376 ARG A 377 MET A 570 TRP A 574 SITE 4 AC3 16 SER A 653 GLY A 654 FAD A 702 HOH A 895 SITE 1 AC4 24 PRO A 119 GLY A 120 GLU A 144 PRO A 170 SITE 2 AC4 24 ASN A 174 GLN A 207 VAL A 485 GLY A 486 SITE 3 AC4 24 GLN A 487 HIS A 488 GLY A 511 MET A 513 SITE 4 AC4 24 ASP A 538 GLY A 539 SER A 540 ASN A 565 SITE 5 AC4 24 HIS A 567 LEU A 568 GLY A 569 MET A 570 SITE 6 AC4 24 VAL A 571 MG A 701 HOH A 920 HOH A1114 CRYST1 179.715 179.715 184.775 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005564 0.003213 0.000000 0.00000 SCALE2 0.000000 0.006425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005412 0.00000