HEADER TRANSFERASE 21-MAY-16 5K4P TITLE CATALYTIC DOMAIN OF MCR-1 PHOSPHOETHANOLAMINE TRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE PHOSPHATIDYLETHANOLAMINE TRANSFERASE MCR-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 214-541); COMPND 5 SYNONYM: POLYMYXIN RESISTANCE PROTEIN MCR-1; COMPND 6 EC: 2.7.-.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: BL21(DE3) KEYWDS PHOSPHOETHANOLAMINE TRANSFERASE, ALPHA/BETA/ALPHA FOLD, ALKALINE KEYWDS 2 PHOSPHATASE SUPERFAMILY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.STOJANOSKI,T.PALZKILL,B.V.V.PRASAD,B.SANKARAN REVDAT 5 29-JUL-20 5K4P 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 04-DEC-19 5K4P 1 REMARK REVDAT 3 05-OCT-16 5K4P 1 JRNL REVDAT 2 14-SEP-16 5K4P 1 JRNL REVDAT 1 31-AUG-16 5K4P 0 JRNL AUTH V.STOJANOSKI,B.SANKARAN,B.V.PRASAD,L.POIREL,P.NORDMANN, JRNL AUTH 2 T.PALZKILL JRNL TITL STRUCTURE OF THE CATALYTIC DOMAIN OF THE COLISTIN RESISTANCE JRNL TITL 2 ENZYME MCR-1. JRNL REF BMC BIOL. V. 14 81 2016 JRNL REFN ESSN 1741-7007 JRNL PMID 27655155 JRNL DOI 10.1186/S12915-016-0303-0 REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.640 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 79227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 7369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9563 - 4.0946 1.00 4768 207 0.1447 0.1584 REMARK 3 2 4.0946 - 3.2502 1.00 4765 216 0.1327 0.1541 REMARK 3 3 3.2502 - 2.8394 1.00 4713 220 0.1439 0.1527 REMARK 3 4 2.8394 - 2.5798 1.00 4709 273 0.1433 0.1551 REMARK 3 5 2.5798 - 2.3949 1.00 4730 230 0.1442 0.1634 REMARK 3 6 2.3949 - 2.2537 1.00 4726 252 0.1405 0.1856 REMARK 3 7 2.2537 - 2.1408 1.00 4714 254 0.1336 0.1686 REMARK 3 8 2.1408 - 2.0476 1.00 4697 246 0.1344 0.1636 REMARK 3 9 2.0476 - 1.9688 1.00 4670 284 0.1312 0.1561 REMARK 3 10 1.9688 - 1.9009 1.00 4752 241 0.1306 0.1593 REMARK 3 11 1.9009 - 1.8414 1.00 4740 239 0.1300 0.1348 REMARK 3 12 1.8414 - 1.7888 1.00 4735 226 0.1378 0.1785 REMARK 3 13 1.7888 - 1.7417 1.00 4744 219 0.1355 0.1733 REMARK 3 14 1.7417 - 1.6992 1.00 4713 276 0.1337 0.1609 REMARK 3 15 1.6992 - 1.6606 1.00 4690 274 0.1382 0.1799 REMARK 3 16 1.6606 - 1.6252 1.00 4752 214 0.1462 0.1535 REMARK 3 17 1.6252 - 1.5927 1.00 4705 249 0.1510 0.1844 REMARK 3 18 1.5927 - 1.5627 1.00 4724 266 0.1560 0.1774 REMARK 3 19 1.5627 - 1.5348 1.00 4706 241 0.1693 0.1997 REMARK 3 20 1.5348 - 1.5087 1.00 4730 275 0.1777 0.2125 REMARK 3 21 1.5087 - 1.4844 1.00 4665 244 0.1803 0.1978 REMARK 3 22 1.4844 - 1.4616 1.00 4712 271 0.1934 0.1876 REMARK 3 23 1.4616 - 1.4401 1.00 4707 211 0.2001 0.2304 REMARK 3 24 1.4401 - 1.4198 1.00 4762 232 0.2171 0.2329 REMARK 3 25 1.4198 - 1.4006 1.00 4707 263 0.2320 0.2462 REMARK 3 26 1.4006 - 1.3824 1.00 4715 253 0.2491 0.2707 REMARK 3 27 1.3824 - 1.3651 1.00 4754 234 0.2623 0.2883 REMARK 3 28 1.3651 - 1.3487 1.00 4735 235 0.2808 0.3088 REMARK 3 29 1.3487 - 1.3330 1.00 4697 275 0.2865 0.2906 REMARK 3 30 1.3330 - 1.3180 1.00 4718 249 0.3053 0.3474 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2614 REMARK 3 ANGLE : 1.362 3552 REMARK 3 CHIRALITY : 0.107 394 REMARK 3 PLANARITY : 0.009 463 REMARK 3 DIHEDRAL : 14.146 950 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1741 -1.8994 52.4205 REMARK 3 T TENSOR REMARK 3 T11: 0.0683 T22: 0.0595 REMARK 3 T33: 0.0631 T12: -0.0101 REMARK 3 T13: -0.0001 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.9651 L22: 0.5995 REMARK 3 L33: 0.4890 L12: -0.3936 REMARK 3 L13: -0.3300 L23: 0.1714 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.0127 S13: 0.0094 REMARK 3 S21: -0.0335 S22: 0.0126 S23: -0.0374 REMARK 3 S31: 0.0271 S32: 0.0068 S33: 0.0041 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3431 2.1199 65.6033 REMARK 3 T TENSOR REMARK 3 T11: 0.0885 T22: 0.1019 REMARK 3 T33: 0.0954 T12: 0.0081 REMARK 3 T13: -0.0138 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.7980 L22: 0.6897 REMARK 3 L33: 0.7012 L12: -0.4554 REMARK 3 L13: -0.6418 L23: 0.4026 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: -0.1642 S13: 0.0564 REMARK 3 S21: 0.1213 S22: 0.0989 S23: -0.1138 REMARK 3 S31: 0.0338 S32: 0.1506 S33: -0.0448 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 408 THROUGH 423 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4100 6.3580 72.4330 REMARK 3 T TENSOR REMARK 3 T11: 0.1604 T22: 0.1949 REMARK 3 T33: 0.1646 T12: 0.0026 REMARK 3 T13: 0.0600 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 6.1519 L22: 7.6285 REMARK 3 L33: 3.3338 L12: 3.5173 REMARK 3 L13: -1.4991 L23: -1.3558 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: -0.4203 S13: -0.2120 REMARK 3 S21: 0.5052 S22: -0.0793 S23: 0.4233 REMARK 3 S31: 0.1998 S32: -0.2317 S33: 0.0795 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 424 THROUGH 502 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5665 4.9223 57.7209 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: 0.0509 REMARK 3 T33: 0.0604 T12: -0.0015 REMARK 3 T13: 0.0045 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.5564 L22: 0.8475 REMARK 3 L33: 0.4951 L12: -0.1854 REMARK 3 L13: -0.0884 L23: 0.2265 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.0060 S13: 0.0789 REMARK 3 S21: -0.0447 S22: 0.0249 S23: -0.0111 REMARK 3 S31: -0.0282 S32: -0.0084 S33: -0.0233 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 503 THROUGH 541 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5061 -1.3923 42.8794 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.1017 REMARK 3 T33: 0.0669 T12: 0.0073 REMARK 3 T13: 0.0189 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 3.2896 L22: 1.1820 REMARK 3 L33: 0.2689 L12: -0.3196 REMARK 3 L13: -0.0354 L23: -0.0493 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: 0.2767 S13: 0.0221 REMARK 3 S21: -0.1635 S22: -0.0669 S23: -0.0656 REMARK 3 S31: -0.0439 S32: -0.0030 S33: -0.0132 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 -7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79227 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.318 REMARK 200 RESOLUTION RANGE LOW (A) : 56.327 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.19700 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 1.76300 REMARK 200 R SYM FOR SHELL (I) : 1.76300 REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M ZINC ACETATE DIHYDRATE, 0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE PH 6.5, 3% W/V D-SORBITOL, AND 18% REMARK 280 PEG 8,000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.34000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.54000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.01000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.54000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.67000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.54000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.54000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 140.01000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.54000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.54000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.67000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.34000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -473.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 93.34000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1010 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 GLU A 206 REMARK 465 ASN A 207 REMARK 465 LEU A 208 REMARK 465 TYR A 209 REMARK 465 PHE A 210 REMARK 465 GLN A 211 REMARK 465 HIS A 212 REMARK 465 MET A 213 REMARK 465 SER A 214 REMARK 465 ALA A 215 REMARK 465 PRO A 216 REMARK 465 LYS A 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN A 603 O HOH A 960 1.66 REMARK 500 ZN ZN A 603 O HOH A 975 1.69 REMARK 500 O HOH A 985 O HOH A 993 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 500 C LYS A 500 O -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 318 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 329 -60.30 -137.51 REMARK 500 SER A 330 -93.25 -167.04 REMARK 500 LEU A 477 -146.49 59.62 REMARK 500 HIS A 478 -149.98 -141.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 246 OE1 REMARK 620 2 GLU A 246 OE2 56.4 REMARK 620 3 TPO A 285 OG1 86.4 137.4 REMARK 620 4 TPO A 285 O2P 85.4 92.8 61.3 REMARK 620 5 ASP A 465 OD2 86.3 112.0 82.4 143.1 REMARK 620 6 HIS A 466 NE2 159.8 105.3 113.7 105.4 94.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 607 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 261 OD2 REMARK 620 2 ASP A 531 OD1 25.7 REMARK 620 3 ASP A 531 OD2 24.1 1.6 REMARK 620 4 HOH A 715 O 94.9 78.4 79.2 REMARK 620 5 HOH A 795 O 87.9 108.3 107.2 166.2 REMARK 620 6 HOH A 941 O 120.5 136.7 135.6 84.3 82.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPO A 285 O3P REMARK 620 2 HIS A 395 NE2 124.2 REMARK 620 3 HOH A 705 O 76.9 86.7 REMARK 620 4 HOH A 960 O 100.1 99.6 173.7 REMARK 620 5 HOH A 984 O 127.1 104.4 87.4 90.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPO A 285 O1P REMARK 620 2 GLU A 405 OE2 94.9 REMARK 620 3 HIS A 478 NE2 110.7 61.5 REMARK 620 4 HOH A 975 O 92.2 5.4 58.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 605 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 300 OE2 REMARK 620 2 ASP A 302 OD2 31.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 609 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 301 O REMARK 620 2 ASP A 302 OD1 83.8 REMARK 620 3 HOH A 704 O 93.0 83.1 REMARK 620 4 HOH A 719 O 92.2 89.6 170.5 REMARK 620 5 HOH A 899 O 93.1 176.7 96.0 91.7 REMARK 620 6 HOH A 962 O 173.6 92.8 81.1 93.3 90.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 606 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 304 OD2 REMARK 620 2 HOH A 956 O 88.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 995 O REMARK 620 2 HOH A1063 O 114.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 608 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 808 O REMARK 620 2 HOH A 812 O 89.7 REMARK 620 3 HOH A 930 O 86.4 175.5 REMARK 620 4 HOH A 987 O 178.2 89.2 94.7 REMARK 620 5 HOH A 993 O 89.2 96.1 86.2 92.4 REMARK 620 6 HOH A1017 O 89.6 88.4 89.3 88.9 175.4 REMARK 620 N 1 2 3 4 5 DBREF1 5K4P A 214 541 UNP MCR1_ECOLX DBREF2 5K4P A A0A0R6L508 214 541 SEQADV 5K4P HIS A 200 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P HIS A 201 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P HIS A 202 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P HIS A 203 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P HIS A 204 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P HIS A 205 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P GLU A 206 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P ASN A 207 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P LEU A 208 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P TYR A 209 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P PHE A 210 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P GLN A 211 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P HIS A 212 UNP A0A0R6L50 EXPRESSION TAG SEQADV 5K4P MET A 213 UNP A0A0R6L50 EXPRESSION TAG SEQRES 1 A 342 HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN HIS SEQRES 2 A 342 MET SER ALA PRO LYS ASP THR ILE TYR HIS ALA LYS ASP SEQRES 3 A 342 ALA VAL GLN ALA THR LYS PRO ASP MET ARG LYS PRO ARG SEQRES 4 A 342 LEU VAL VAL PHE VAL VAL GLY GLU THR ALA ARG ALA ASP SEQRES 5 A 342 HIS VAL SER PHE ASN GLY TYR GLU ARG ASP THR PHE PRO SEQRES 6 A 342 GLN LEU ALA LYS ILE ASP GLY VAL THR ASN PHE SER ASN SEQRES 7 A 342 VAL THR SER CYS GLY THR SER TPO ALA TYR SER VAL PRO SEQRES 8 A 342 CYS MET PHE SER TYR LEU GLY ALA ASP GLU TYR ASP VAL SEQRES 9 A 342 ASP THR ALA LYS TYR GLN GLU ASN VAL LEU ASP THR LEU SEQRES 10 A 342 ASP ARG LEU GLY VAL SER ILE LEU TRP ARG ASP ASN ASN SEQRES 11 A 342 SER ASP SER LYS GLY VAL MET ASP LYS LEU PRO LYS ALA SEQRES 12 A 342 GLN PHE ALA ASP TYR LYS SER ALA THR ASN ASN ALA ILE SEQRES 13 A 342 CYS ASN THR ASN PRO TYR ASN GLU CYS ARG ASP VAL GLY SEQRES 14 A 342 MET LEU VAL GLY LEU ASP ASP PHE VAL ALA ALA ASN ASN SEQRES 15 A 342 GLY LYS ASP MET LEU ILE MET LEU HIS GLN MET GLY ASN SEQRES 16 A 342 HIS GLY PRO ALA TYR PHE LYS ARG TYR ASP GLU LYS PHE SEQRES 17 A 342 ALA LYS PHE THR PRO VAL CYS GLU GLY ASN GLU LEU ALA SEQRES 18 A 342 LYS CYS GLU HIS GLN SER LEU ILE ASN ALA TYR ASP ASN SEQRES 19 A 342 ALA LEU LEU ALA THR ASP ASP PHE ILE ALA GLN SER ILE SEQRES 20 A 342 GLN TRP LEU GLN THR HIS SER ASN ALA TYR ASP VAL SER SEQRES 21 A 342 MET LEU TYR VAL SER ASP HIS GLY GLU SER LEU GLY GLU SEQRES 22 A 342 ASN GLY VAL TYR LEU HIS GLY MET PRO ASN ALA PHE ALA SEQRES 23 A 342 PRO LYS GLU GLN ARG SER VAL PRO ALA PHE PHE TRP THR SEQRES 24 A 342 ASP LYS GLN THR GLY ILE THR PRO MET ALA THR ASP THR SEQRES 25 A 342 VAL LEU THR HIS ASP ALA ILE THR PRO THR LEU LEU LYS SEQRES 26 A 342 LEU PHE ASP VAL THR ALA ASP LYS VAL LYS ASP ARG THR SEQRES 27 A 342 ALA PHE ILE ARG MODRES 5K4P TPO A 285 THR MODIFIED RESIDUE HET TPO A 285 11 HET ZN A 601 1 HET ZN A 602 1 HET ZN A 603 1 HET ZN A 604 1 HET ZN A 605 1 HET ZN A 606 1 HET ZN A 607 1 HET ZN A 608 1 HET ZN A 609 1 HET ZN A 610 1 HET SOR A 611 12 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETNAM SOR SORBITOL HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 ZN 10(ZN 2+) FORMUL 12 SOR C6 H14 O6 FORMUL 13 HOH *367(H2 O) HELIX 1 AA1 ARG A 249 GLY A 257 5 9 HELIX 2 AA2 PHE A 263 LYS A 268 1 6 HELIX 3 AA3 SER A 284 PHE A 293 1 10 HELIX 4 AA4 LEU A 296 TYR A 301 1 6 HELIX 5 AA5 ASP A 302 GLN A 309 5 8 HELIX 6 AA6 ASN A 311 LEU A 319 1 9 HELIX 7 AA7 PRO A 340 ALA A 342 5 3 HELIX 8 AA8 ARG A 365 VAL A 371 5 7 HELIX 9 AA9 GLY A 372 ASN A 380 1 9 HELIX 10 AB1 ALA A 398 TYR A 403 5 6 HELIX 11 AB2 ASP A 404 ALA A 408 5 5 HELIX 12 AB3 GLU A 418 CYS A 422 5 5 HELIX 13 AB4 GLU A 423 THR A 451 1 29 HELIX 14 AB5 GLU A 472 GLY A 474 5 3 HELIX 15 AB6 PRO A 486 ARG A 490 5 5 HELIX 16 AB7 LYS A 500 GLY A 503 5 4 HELIX 17 AB8 ALA A 517 PHE A 526 1 10 HELIX 18 AB9 ALA A 530 LYS A 534 5 5 SHEET 1 AA1 2 VAL A 227 GLN A 228 0 SHEET 2 AA1 2 VAL A 528 THR A 529 -1 O THR A 529 N VAL A 227 SHEET 1 AA2 7 VAL A 272 PHE A 275 0 SHEET 2 AA2 7 ALA A 494 THR A 498 -1 O PHE A 496 N THR A 273 SHEET 3 AA2 7 ASP A 457 SER A 464 -1 N MET A 460 O TRP A 497 SHEET 4 AA2 7 ARG A 238 GLY A 245 1 N VAL A 243 O LEU A 461 SHEET 5 AA2 7 MET A 385 HIS A 390 1 O ILE A 387 N VAL A 240 SHEET 6 AA2 7 SER A 322 ASP A 327 1 N LEU A 324 O MET A 388 SHEET 7 AA2 7 PHE A 344 ASP A 346 1 O ALA A 345 N TRP A 325 SHEET 1 AA3 2 VAL A 278 THR A 279 0 SHEET 2 AA3 2 LEU A 513 THR A 514 1 O LEU A 513 N THR A 279 SHEET 1 AA4 2 SER A 469 LEU A 470 0 SHEET 2 AA4 2 TYR A 476 LEU A 477 -1 O LEU A 477 N SER A 469 SSBOND 1 CYS A 281 CYS A 291 1555 1555 2.11 SSBOND 2 CYS A 356 CYS A 364 1555 1555 2.49 SSBOND 3 CYS A 414 CYS A 422 1555 1555 2.04 LINK C SER A 284 N TPO A 285 1555 1555 1.34 LINK C TPO A 285 N ALA A 286 1555 1555 1.32 LINK OE1 GLU A 246 ZN ZN A 601 1555 1555 2.53 LINK OE2 GLU A 246 ZN ZN A 601 1555 1555 1.97 LINK OD2 ASP A 261 ZN ZN A 607 1555 1555 1.84 LINK OG1 TPO A 285 ZN ZN A 601 1555 1555 2.64 LINK O2P TPO A 285 ZN ZN A 601 1555 1555 2.01 LINK O3P TPO A 285 ZN ZN A 602 1555 1555 1.93 LINK O1P TPO A 285 ZN ZN A 604 1555 5545 1.96 LINK OE2 GLU A 300 ZN ZN A 605 1555 1555 1.93 LINK O TYR A 301 ZN ZN A 609 1555 1555 2.24 LINK OD2 ASP A 302 ZN ZN A 605 1555 8555 1.89 LINK OD1 ASP A 302 ZN ZN A 609 1555 1555 2.19 LINK OD2 ASP A 304 ZN ZN A 606 1555 1555 2.20 LINK NE2 HIS A 395 ZN ZN A 602 1555 1555 1.98 LINK OE2 GLU A 405 ZN ZN A 604 1555 1555 1.93 LINK OD2 ASP A 465 ZN ZN A 601 1555 1555 1.98 LINK NE2 HIS A 466 ZN ZN A 601 1555 1555 2.05 LINK NE2 HIS A 478 ZN ZN A 604 1555 5545 2.00 LINK OD1 ASP A 531 ZN ZN A 607 1555 8655 2.02 LINK OD2 ASP A 531 ZN ZN A 607 1555 8655 2.52 LINK ZN ZN A 602 O HOH A 705 1555 1555 2.33 LINK ZN ZN A 602 O HOH A 960 1555 1555 2.02 LINK ZN ZN A 602 O HOH A 984 1555 1555 2.43 LINK ZN ZN A 603 O HOH A 995 1555 1555 1.84 LINK ZN ZN A 603 O HOH A1063 1555 1555 1.84 LINK ZN ZN A 604 O HOH A 975 1555 5555 1.90 LINK ZN ZN A 606 O HOH A 956 1555 1555 2.10 LINK ZN ZN A 607 O HOH A 715 1555 8565 2.27 LINK ZN ZN A 607 O HOH A 795 1555 1555 2.10 LINK ZN ZN A 607 O HOH A 941 1555 8565 2.01 LINK ZN ZN A 608 O HOH A 808 1555 1555 2.15 LINK ZN ZN A 608 O HOH A 812 1555 1555 2.07 LINK ZN ZN A 608 O HOH A 930 1555 1555 2.20 LINK ZN ZN A 608 O HOH A 987 1555 1555 2.03 LINK ZN ZN A 608 O HOH A 993 1555 1555 2.23 LINK ZN ZN A 608 O HOH A1017 1555 1555 2.09 LINK ZN ZN A 609 O HOH A 704 1555 8555 2.15 LINK ZN ZN A 609 O HOH A 719 1555 1555 2.09 LINK ZN ZN A 609 O HOH A 899 1555 1555 2.05 LINK ZN ZN A 609 O HOH A 962 1555 1555 2.00 CISPEP 1 GLY A 396 PRO A 397 0 4.01 CISPEP 2 THR A 411 PRO A 412 0 -0.93 CRYST1 59.080 59.080 186.680 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016926 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005357 0.00000