HEADER HYDROLASE 23-MAY-16 5K5M TITLE CO-CRYSTAL STRUCTURE OF DENGUE VIRUS SEROTYPE 2 RNA DEPENDENT RNA TITLE 2 POLYMERASE WITH COMPOUND 27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2757-3391; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 2; SOURCE 3 ORGANISM_TAXID: 11060; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DE3 KEYWDS RNA DEPENDENT RNA POLYMERASE, DENGUE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ARORA,T.E.BENSON REVDAT 2 06-MAR-24 5K5M 1 REMARK REVDAT 1 24-AUG-16 5K5M 0 JRNL AUTH S.P.LIM,C.G.NOBLE,C.C.SEH,T.S.SOH,A.EL SAHILI,G.K.CHAN, JRNL AUTH 2 J.LESCAR,R.ARORA,T.BENSON,S.NILAR,U.MANJUNATHA,K.F.WAN, JRNL AUTH 3 H.DONG,X.XIE,P.Y.SHI,F.YOKOKAWA JRNL TITL POTENT ALLOSTERIC DENGUE VIRUS NS5 POLYMERASE INHIBITORS: JRNL TITL 2 MECHANISM OF ACTION AND RESISTANCE PROFILING. JRNL REF PLOS PATHOG. V. 12 05737 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 27500641 JRNL DOI 10.1371/JOURNAL.PPAT.1005737 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 47141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2384 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.26 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3150 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2001 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2984 REMARK 3 BIN R VALUE (WORKING SET) : 0.1991 REMARK 3 BIN FREE R VALUE : 0.2186 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.27 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 166 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4632 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 429 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.62220 REMARK 3 B22 (A**2) : -3.79450 REMARK 3 B33 (A**2) : -5.82770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.166 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.147 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.157 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.143 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4829 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6532 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1748 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 122 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 712 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4829 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 596 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5778 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.11 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.14 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47145 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 91.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.35M MGCL2, 16% PEG 4000, 0.1M MES PH REMARK 280 7.0, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.07000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.88500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.29500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.07000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.88500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.29500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.07000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.88500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.29500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.07000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.88500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.29500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1108 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1150 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1174 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1504 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 266 REMARK 465 ILE A 267 REMARK 465 GLU A 268 REMARK 465 SER A 269 REMARK 465 GLU A 270 REMARK 465 ILE A 271 REMARK 465 PRO A 272 REMARK 465 GLN A 313 REMARK 465 THR A 314 REMARK 465 GLY A 315 REMARK 465 SER A 316 REMARK 465 ALA A 317 REMARK 465 THR A 344 REMARK 465 ASP A 345 REMARK 465 THR A 346 REMARK 465 THR A 347 REMARK 465 PRO A 348 REMARK 465 PHE A 349 REMARK 465 GLY A 350 REMARK 465 GLN A 351 REMARK 465 GLN A 352 REMARK 465 ARG A 353 REMARK 465 VAL A 354 REMARK 465 PHE A 355 REMARK 465 LYS A 356 REMARK 465 ALA A 407 REMARK 465 ALA A 408 REMARK 465 LEU A 409 REMARK 465 GLY A 410 REMARK 465 ALA A 411 REMARK 465 ILE A 412 REMARK 465 PHE A 413 REMARK 465 THR A 414 REMARK 465 ASP A 415 REMARK 465 GLU A 416 REMARK 465 ASN A 417 REMARK 465 LYS A 418 REMARK 465 GLY A 456 REMARK 465 LYS A 457 REMARK 465 ARG A 458 REMARK 465 GLU A 459 REMARK 465 LYS A 460 REMARK 465 LYS A 461 REMARK 465 LEU A 462 REMARK 465 GLY A 463 REMARK 465 GLU A 464 REMARK 465 PHE A 465 REMARK 465 GLY A 466 REMARK 465 LYS A 467 REMARK 465 ALA A 468 REMARK 465 LYS A 469 REMARK 465 GLY A 470 REMARK 465 SER A 471 REMARK 465 THR A 584 REMARK 465 PRO A 585 REMARK 465 ARG A 586 REMARK 465 GLY A 587 REMARK 465 GLY A 602 REMARK 465 GLN A 603 REMARK 465 VAL A 604 REMARK 465 GLY A 605 REMARK 465 ARG A 890 REMARK 465 ARG A 891 REMARK 465 GLU A 892 REMARK 465 GLU A 893 REMARK 465 GLU A 894 REMARK 465 GLU A 895 REMARK 465 ALA A 896 REMARK 465 GLY A 897 REMARK 465 VAL A 898 REMARK 465 LEU A 899 REMARK 465 TRP A 900 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 297 70.08 -116.71 REMARK 500 LYS A 301 -34.92 -134.07 REMARK 500 SER A 319 62.25 72.81 REMARK 500 LYS A 358 30.76 -88.09 REMARK 500 ASP A 360 48.99 -92.30 REMARK 500 SER A 405 -88.23 -131.96 REMARK 500 LEU A 504 -37.57 70.98 REMARK 500 VAL A 507 17.55 -140.97 REMARK 500 ASN A 575 81.76 -154.91 REMARK 500 ASP A 597 -169.60 -118.68 REMARK 500 GLN A 598 160.26 75.67 REMARK 500 SER A 791 -151.11 56.31 REMARK 500 ILE A 818 -71.29 -117.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1528 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1529 DISTANCE = 5.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 438 OE1 REMARK 620 2 HIS A 442 NE2 91.5 REMARK 620 3 CYS A 447 SG 100.3 121.3 REMARK 620 4 CYS A 450 SG 119.3 109.3 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 712 NE2 REMARK 620 2 HIS A 714 NE2 99.5 REMARK 620 3 CYS A 728 SG 103.7 107.9 REMARK 620 4 CYS A 847 SG 105.8 117.2 119.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 68T A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 1004 DBREF 5K5M A 266 900 UNP B5LNH6 B5LNH6_9FLAV 2757 3391 SEQRES 1 A 635 GLY ILE GLU SER GLU ILE PRO ASN LEU ASP ILE ILE GLY SEQRES 2 A 635 LYS ARG ILE GLU LYS ILE LYS GLN GLU HIS GLU THR SER SEQRES 3 A 635 TRP HIS TYR ASP GLN ASP HIS PRO TYR LYS THR TRP ALA SEQRES 4 A 635 TYR HIS GLY SER TYR GLU THR LYS GLN THR GLY SER ALA SEQRES 5 A 635 SER SER MET VAL ASN GLY VAL VAL ARG LEU LEU THR LYS SEQRES 6 A 635 PRO TRP ASP VAL VAL PRO MET VAL THR GLN MET ALA MET SEQRES 7 A 635 THR ASP THR THR PRO PHE GLY GLN GLN ARG VAL PHE LYS SEQRES 8 A 635 GLU LYS VAL ASP THR ARG THR GLN GLU PRO LYS GLU GLY SEQRES 9 A 635 THR LYS LYS LEU MET LYS ILE THR ALA GLU TRP LEU TRP SEQRES 10 A 635 LYS GLU LEU GLY LYS LYS LYS THR PRO ARG MET CYS THR SEQRES 11 A 635 ARG GLU GLU PHE THR ARG LYS VAL ARG SER ASN ALA ALA SEQRES 12 A 635 LEU GLY ALA ILE PHE THR ASP GLU ASN LYS TRP LYS SER SEQRES 13 A 635 ALA ARG GLU ALA VAL GLU ASP SER ARG PHE TRP GLU LEU SEQRES 14 A 635 VAL ASP LYS GLU ARG ASN LEU HIS LEU GLU GLY LYS CYS SEQRES 15 A 635 GLU THR CYS VAL TYR ASN MET MET GLY LYS ARG GLU LYS SEQRES 16 A 635 LYS LEU GLY GLU PHE GLY LYS ALA LYS GLY SER ARG ALA SEQRES 17 A 635 ILE TRP TYR MET TRP LEU GLY ALA ARG PHE LEU GLU PHE SEQRES 18 A 635 GLU ALA LEU GLY PHE LEU ASN GLU ASP HIS TRP PHE SER SEQRES 19 A 635 ARG GLU ASN SER LEU SER GLY VAL GLU GLY GLU GLY LEU SEQRES 20 A 635 HIS LYS LEU GLY TYR ILE LEU ARG ASP VAL SER LYS LYS SEQRES 21 A 635 GLU GLY GLY ALA MET TYR ALA ASP ASP THR ALA GLY TRP SEQRES 22 A 635 ASP THR ARG ILE THR LEU GLU ASP LEU LYS ASN GLU GLU SEQRES 23 A 635 MET VAL THR ASN HIS MET GLU GLY GLU HIS LYS LYS LEU SEQRES 24 A 635 ALA GLU ALA ILE PHE LYS LEU THR TYR GLN ASN LYS VAL SEQRES 25 A 635 VAL ARG VAL GLN ARG PRO THR PRO ARG GLY THR VAL MET SEQRES 26 A 635 ASP ILE ILE SER ARG ARG ASP GLN ARG GLY SER GLY GLN SEQRES 27 A 635 VAL GLY THR TYR GLY LEU ASN THR PHE THR ASN MET GLU SEQRES 28 A 635 ALA GLN LEU ILE ARG GLN MET GLU GLY GLU GLY VAL PHE SEQRES 29 A 635 LYS SER ILE GLN HIS LEU THR VAL THR GLU GLU ILE ALA SEQRES 30 A 635 VAL GLN ASN TRP LEU ALA ARG VAL GLY ARG GLU ARG LEU SEQRES 31 A 635 SER ARG MET ALA ILE SER GLY ASP ASP CYS VAL VAL LYS SEQRES 32 A 635 PRO LEU ASP ASP ARG PHE ALA SER ALA LEU THR ALA LEU SEQRES 33 A 635 ASN ASP MET GLY LYS VAL ARG LYS ASP ILE GLN GLN TRP SEQRES 34 A 635 GLU PRO SER ARG GLY TRP ASN ASP TRP THR GLN VAL PRO SEQRES 35 A 635 PHE CYS SER HIS HIS PHE HIS GLU LEU ILE MET LYS ASP SEQRES 36 A 635 GLY ARG VAL LEU VAL VAL PRO CYS ARG ASN GLN ASP GLU SEQRES 37 A 635 LEU ILE GLY ARG ALA ARG ILE SER GLN GLY ALA GLY TRP SEQRES 38 A 635 SER LEU ARG GLU THR ALA CYS LEU GLY LYS SER TYR ALA SEQRES 39 A 635 GLN MET TRP SER LEU MET TYR PHE HIS ARG ARG ASP LEU SEQRES 40 A 635 ARG LEU ALA ALA ASN ALA ILE CYS SER ALA VAL PRO SER SEQRES 41 A 635 HIS TRP VAL PRO THR SER ARG THR THR TRP SER ILE HIS SEQRES 42 A 635 ALA LYS HIS GLU TRP MET THR THR GLU ASP MET LEU THR SEQRES 43 A 635 VAL TRP ASN ARG VAL TRP ILE GLN GLU ASN PRO TRP MET SEQRES 44 A 635 GLU ASP LYS THR PRO VAL GLU SER TRP GLU GLU ILE PRO SEQRES 45 A 635 TYR LEU GLY LYS ARG GLU ASP GLN TRP CYS GLY SER LEU SEQRES 46 A 635 ILE GLY LEU THR SER ARG ALA THR TRP ALA LYS ASN ILE SEQRES 47 A 635 GLN THR ALA ILE ASN GLN VAL ARG SER LEU ILE GLY ASN SEQRES 48 A 635 GLU GLU TYR THR ASP TYR MET PRO SER MET LYS ARG PHE SEQRES 49 A 635 ARG ARG GLU GLU GLU GLU ALA GLY VAL LEU TRP HET ZN A1001 1 HET ZN A1002 1 HET 68T A1003 33 HET MES A1004 24 HETNAM ZN ZINC ION HETNAM 68T 5-[5-(3-HYDROXYPROP-1-YN-1-YL)THIOPHEN-2-YL]-2,4- HETNAM 2 68T DIMETHOXY-N-[(3-METHOXYPHENYL)SULFONYL]BENZAMIDE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 ZN 2(ZN 2+) FORMUL 4 68T C23 H21 N O7 S2 FORMUL 5 MES C6 H13 N O4 S FORMUL 6 HOH *429(H2 O) HELIX 1 AA1 ASN A 273 HIS A 288 1 16 HELIX 2 AA2 ASN A 322 LEU A 328 1 7 HELIX 3 AA3 THR A 329 VAL A 334 5 6 HELIX 4 AA4 VAL A 335 GLN A 340 1 6 HELIX 5 AA5 MET A 341 MET A 343 5 3 HELIX 6 AA6 LYS A 367 LYS A 387 1 21 HELIX 7 AA7 THR A 395 ARG A 404 1 10 HELIX 8 AA8 SER A 421 ASP A 428 1 8 HELIX 9 AA9 ASP A 428 LEU A 443 1 16 HELIX 10 AB1 TRP A 478 GLY A 490 1 13 HELIX 11 AB2 GLY A 490 ASP A 495 1 6 HELIX 12 AB3 SER A 499 LEU A 504 1 6 HELIX 13 AB4 GLY A 511 LYS A 524 1 14 HELIX 14 AB5 GLY A 537 ILE A 542 5 6 HELIX 15 AB6 THR A 543 MET A 552 1 10 HELIX 16 AB7 VAL A 553 MET A 557 5 5 HELIX 17 AB8 GLU A 558 TYR A 573 1 16 HELIX 18 AB9 TYR A 607 GLU A 626 1 20 HELIX 19 AC1 THR A 636 SER A 656 1 21 HELIX 20 AC2 ASP A 671 ALA A 677 5 7 HELIX 21 AC3 LEU A 678 MET A 684 1 7 HELIX 22 AC4 ASN A 730 ARG A 739 1 10 HELIX 23 AC5 SER A 747 TYR A 766 1 20 HELIX 24 AC6 ARG A 769 VAL A 783 1 15 HELIX 25 AC7 ASP A 808 ILE A 818 1 11 HELIX 26 AC8 SER A 832 ILE A 836 5 5 HELIX 27 AC9 GLY A 840 CYS A 847 1 8 HELIX 28 AD1 LEU A 853 ASN A 862 1 10 HELIX 29 AD2 ASN A 862 GLY A 875 1 14 HELIX 30 AD3 TYR A 882 MET A 886 5 5 SHEET 1 AA1 5 ALA A 304 GLU A 310 0 SHEET 2 AA1 5 VAL A 589 ARG A 595 -1 O SER A 594 N ALA A 304 SHEET 3 AA1 5 LYS A 576 ARG A 582 -1 N VAL A 580 O ASP A 591 SHEET 4 AA1 5 TYR A 452 MET A 454 1 N TYR A 452 O ARG A 579 SHEET 5 AA1 5 TRP A 475 TYR A 476 -1 O TYR A 476 N ASN A 453 SHEET 1 AA2 2 MET A 320 VAL A 321 0 SHEET 2 AA2 2 ILE A 740 SER A 741 -1 O SER A 741 N MET A 320 SHEET 1 AA3 2 MET A 658 SER A 661 0 SHEET 2 AA3 2 ASP A 664 VAL A 667 -1 O ASP A 664 N SER A 661 SHEET 1 AA4 2 HIS A 712 ILE A 717 0 SHEET 2 AA4 2 VAL A 723 CYS A 728 -1 O LEU A 724 N LEU A 716 LINK OE1 GLU A 438 ZN ZN A1002 1555 1555 2.60 LINK NE2 HIS A 442 ZN ZN A1002 1555 1555 2.04 LINK SG CYS A 447 ZN ZN A1002 1555 1555 2.26 LINK SG CYS A 450 ZN ZN A1002 1555 1555 2.22 LINK NE2 HIS A 712 ZN ZN A1001 1555 1555 2.09 LINK NE2 HIS A 714 ZN ZN A1001 1555 1555 2.11 LINK SG CYS A 728 ZN ZN A1001 1555 1555 2.32 LINK SG CYS A 847 ZN ZN A1001 1555 1555 2.27 SITE 1 AC1 4 HIS A 712 HIS A 714 CYS A 728 CYS A 847 SITE 1 AC2 4 GLU A 438 HIS A 442 CYS A 447 CYS A 450 SITE 1 AC3 18 LEU A 512 HIS A 513 CYS A 709 SER A 710 SITE 2 AC3 18 HIS A 711 ARG A 729 ARG A 737 THR A 794 SITE 3 AC3 18 TRP A 795 SER A 796 HIS A 798 ALA A 799 SITE 4 AC3 18 LYS A 800 GLU A 802 TRP A 803 HOH A1109 SITE 5 AC3 18 HOH A1110 HOH A1300 SITE 1 AC4 6 VAL A 321 GLY A 323 ARG A 326 LEU A 327 SITE 2 AC4 6 LEU A 748 LEU A 873 CRYST1 82.140 115.770 148.590 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012174 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006730 0.00000