HEADER METAL BINDING PROTEIN 24-MAY-16 5K5W TITLE CRYSTAL STRUCTURE OF LIMITING CO2-INDUCIBLE PROTEIN LCIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIMITING CO2-INDUCIBLE PROTEIN LCIB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 53-346; COMPND 5 SYNONYM: LOW-CO2-INDUCIBLE PROTEIN, CARBON DIOXIDE CONCENTRATING COMPND 6 MECHANISM RELATED PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 GENE: PMP1, LCIB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOPROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.JIN,J.SUN,T.WUNDER,D.TANG,O.M.MUELLER-CAJAR,Y.GAO REVDAT 4 08-NOV-23 5K5W 1 REMARK LINK REVDAT 3 27-SEP-17 5K5W 1 REMARK REVDAT 2 18-JAN-17 5K5W 1 JRNL REVDAT 1 07-DEC-16 5K5W 0 JRNL AUTH S.JIN,J.SUN,T.WUNDER,D.TANG,A.B.COUSINS,S.K.SZE, JRNL AUTH 2 O.MUELLER-CAJAR,Y.G.GAO JRNL TITL STRUCTURAL INSIGHTS INTO THE LCIB PROTEIN FAMILY REVEALS A JRNL TITL 2 NEW GROUP OF BETA-CARBONIC ANHYDRASES JRNL REF PROC. NATL. ACAD. SCI. V. 113 14716 2016 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 27911826 JRNL DOI 10.1073/PNAS.1616294113 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 15992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.269 REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9344 - 4.7066 0.96 2677 124 0.2671 0.2648 REMARK 3 2 4.7066 - 3.7365 0.98 2562 138 0.2317 0.2420 REMARK 3 3 3.7365 - 3.2644 0.98 2511 146 0.2677 0.2756 REMARK 3 4 3.2644 - 2.9660 0.99 2520 140 0.2997 0.3003 REMARK 3 5 2.9660 - 2.7535 0.98 2510 128 0.3105 0.2941 REMARK 3 6 2.7535 - 2.5911 0.95 2398 138 0.3210 0.3204 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3281 REMARK 3 ANGLE : 1.355 4442 REMARK 3 CHIRALITY : 0.068 527 REMARK 3 PLANARITY : 0.006 566 REMARK 3 DIHEDRAL : 15.775 1173 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALA REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16427 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 41.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5B5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS, 25% W/V PEG3350, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.91750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.87650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.10900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.87650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.91750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.10900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 50 REMARK 465 HIS A 51 REMARK 465 MET A 52 REMARK 465 ALA A 53 REMARK 465 ALA A 54 REMARK 465 SER A 55 REMARK 465 THR A 56 REMARK 465 ALA A 57 REMARK 465 VAL A 58 REMARK 465 ALA A 59 REMARK 465 PRO A 60 REMARK 465 VAL A 61 REMARK 465 GLU A 62 REMARK 465 ASN A 63 REMARK 465 GLY A 64 REMARK 465 ALA A 65 REMARK 465 ALA A 66 REMARK 465 PRO A 67 REMARK 465 ALA A 68 REMARK 465 VAL A 69 REMARK 465 ALA A 70 REMARK 465 HIS A 71 REMARK 465 LYS A 72 REMARK 465 ARG A 73 REMARK 465 THR A 74 REMARK 465 PHE A 75 REMARK 465 ALA A 76 REMARK 465 GLN A 77 REMARK 465 ARG A 78 REMARK 465 HIS A 79 REMARK 465 SER A 80 REMARK 465 GLU A 81 REMARK 465 LEU A 82 REMARK 465 ILE A 83 REMARK 465 LYS A 84 REMARK 465 GLY A 110 REMARK 465 ASP A 111 REMARK 465 ASN A 112 REMARK 465 SER A 163 REMARK 465 PRO A 164 REMARK 465 VAL A 165 REMARK 465 CYS A 166 REMARK 465 ASN A 167 REMARK 465 GLY A 168 REMARK 465 GLY A 169 REMARK 465 ARG A 170 REMARK 465 GLU A 171 REMARK 465 ILE A 183 REMARK 465 ASN A 184 REMARK 465 SER A 185 REMARK 465 GLU A 186 REMARK 465 GLY A 187 REMARK 465 GLU A 188 REMARK 465 MET A 189 REMARK 465 GLY A 190 REMARK 465 ALA A 191 REMARK 465 LEU A 192 REMARK 465 SER A 193 REMARK 465 ARG A 194 REMARK 465 PRO A 195 REMARK 465 GLY A 196 REMARK 465 ARG A 197 REMARK 465 PRO A 198 REMARK 465 LYS A 199 REMARK 465 GLN A 200 REMARK 465 SER A 201 REMARK 465 GLY A 218 REMARK 465 VAL A 219 REMARK 465 GLU A 220 REMARK 465 LYS A 221 REMARK 465 SER A 222 REMARK 465 CYS A 223 REMARK 465 LYS A 224 REMARK 465 VAL A 225 REMARK 465 TRP A 300 REMARK 465 GLY A 301 REMARK 465 LYS A 302 REMARK 465 GLU A 303 REMARK 465 LEU A 304 REMARK 465 SER A 305 REMARK 465 ALA A 306 REMARK 465 SER A 307 REMARK 465 GLY A 308 REMARK 465 ASP A 309 REMARK 465 ALA A 310 REMARK 465 SER A 311 REMARK 465 ILE A 312 REMARK 465 GLN A 335 REMARK 465 VAL A 336 REMARK 465 PRO A 337 REMARK 465 ALA A 338 REMARK 465 LEU A 339 REMARK 465 SER A 340 REMARK 465 PRO A 341 REMARK 465 ARG A 342 REMARK 465 GLN A 343 REMARK 465 ILE A 344 REMARK 465 GLN A 345 REMARK 465 THR A 346 REMARK 465 GLY B 50 REMARK 465 HIS B 51 REMARK 465 MET B 52 REMARK 465 ALA B 53 REMARK 465 ALA B 54 REMARK 465 SER B 55 REMARK 465 THR B 56 REMARK 465 ALA B 57 REMARK 465 VAL B 58 REMARK 465 ALA B 59 REMARK 465 PRO B 60 REMARK 465 VAL B 61 REMARK 465 GLU B 62 REMARK 465 ASN B 63 REMARK 465 GLY B 64 REMARK 465 ALA B 65 REMARK 465 ALA B 66 REMARK 465 PRO B 67 REMARK 465 ALA B 68 REMARK 465 VAL B 69 REMARK 465 ALA B 70 REMARK 465 HIS B 71 REMARK 465 LYS B 72 REMARK 465 ARG B 73 REMARK 465 THR B 74 REMARK 465 PHE B 75 REMARK 465 ALA B 76 REMARK 465 HIS B 162 REMARK 465 SER B 163 REMARK 465 PRO B 164 REMARK 465 VAL B 165 REMARK 465 CYS B 166 REMARK 465 ASN B 167 REMARK 465 GLY B 168 REMARK 465 GLY B 169 REMARK 465 ARG B 170 REMARK 465 GLU B 188 REMARK 465 MET B 189 REMARK 465 GLY B 190 REMARK 465 ALA B 191 REMARK 465 LEU B 192 REMARK 465 SER B 193 REMARK 465 ARG B 194 REMARK 465 PRO B 195 REMARK 465 GLY B 196 REMARK 465 ARG B 197 REMARK 465 PRO B 198 REMARK 465 LYS B 199 REMARK 465 GLN B 200 REMARK 465 GLY B 301 REMARK 465 LYS B 302 REMARK 465 GLU B 303 REMARK 465 LEU B 304 REMARK 465 SER B 305 REMARK 465 ALA B 306 REMARK 465 SER B 307 REMARK 465 GLY B 308 REMARK 465 ASP B 309 REMARK 465 ALA B 310 REMARK 465 GLN B 335 REMARK 465 VAL B 336 REMARK 465 PRO B 337 REMARK 465 ALA B 338 REMARK 465 LEU B 339 REMARK 465 SER B 340 REMARK 465 PRO B 341 REMARK 465 ARG B 342 REMARK 465 GLN B 343 REMARK 465 ILE B 344 REMARK 465 GLN B 345 REMARK 465 THR B 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 VAL A 286 CG1 CG2 REMARK 470 VAL B 286 CG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 279 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 123 O HOH B 601 1.85 REMARK 500 OD2 ASP A 94 O HOH A 601 2.01 REMARK 500 OE2 GLU B 267 O HOH B 602 2.13 REMARK 500 O HOH B 622 O HOH B 627 2.14 REMARK 500 NH2 ARG A 98 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 334 C - N - CD ANGL. DEV. = 16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 106 -50.26 -121.65 REMARK 500 PHE A 108 -178.19 -171.24 REMARK 500 LEU A 149 57.97 -93.66 REMARK 500 SER A 161 47.74 -80.12 REMARK 500 PRO A 179 -170.77 -69.23 REMARK 500 ALA A 203 -128.49 -71.63 REMARK 500 ASP A 233 66.08 -152.04 REMARK 500 LYS A 251 73.06 64.22 REMARK 500 ASP A 258 -163.92 -116.23 REMARK 500 ALA A 318 -73.94 -141.75 REMARK 500 ASN A 325 10.35 54.12 REMARK 500 ARG B 78 -92.54 -107.56 REMARK 500 LYS B 84 1.57 -57.75 REMARK 500 SER B 138 98.77 -64.51 REMARK 500 LEU B 149 75.01 -100.98 REMARK 500 PRO B 179 -168.73 -75.55 REMARK 500 ASN B 184 -94.67 -69.81 REMARK 500 SER B 185 64.46 -176.81 REMARK 500 ALA B 203 -107.82 -14.76 REMARK 500 VAL B 216 -72.48 -74.63 REMARK 500 ASP B 233 68.01 -151.10 REMARK 500 LYS B 251 72.08 38.66 REMARK 500 ALA B 318 -85.04 -110.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 279 LYS A 280 144.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 627 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 628 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A 629 DISTANCE = 8.17 ANGSTROMS REMARK 525 HOH A 630 DISTANCE = 9.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 120 SG REMARK 620 2 HIS A 180 NE2 106.8 REMARK 620 3 CYS A 204 SG 105.6 99.3 REMARK 620 4 HOH A 604 O 119.4 110.7 113.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 120 SG REMARK 620 2 HIS B 180 NE2 97.8 REMARK 620 3 CYS B 204 SG 120.9 109.9 REMARK 620 4 HOH B 631 O 107.1 101.2 116.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5B5X RELATED DB: PDB REMARK 900 RELATED ID: 5B5Y RELATED DB: PDB REMARK 900 RELATED ID: 5B5Z RELATED DB: PDB REMARK 900 RELATED ID: 5B60 RELATED DB: PDB DBREF 5K5W A 53 346 UNP Q0ZAI6 Q0ZAI6_CHLRE 53 346 DBREF 5K5W B 53 346 UNP Q0ZAI6 Q0ZAI6_CHLRE 53 346 SEQADV 5K5W GLY A 50 UNP Q0ZAI6 EXPRESSION TAG SEQADV 5K5W HIS A 51 UNP Q0ZAI6 EXPRESSION TAG SEQADV 5K5W MET A 52 UNP Q0ZAI6 EXPRESSION TAG SEQADV 5K5W GLY B 50 UNP Q0ZAI6 EXPRESSION TAG SEQADV 5K5W HIS B 51 UNP Q0ZAI6 EXPRESSION TAG SEQADV 5K5W MET B 52 UNP Q0ZAI6 EXPRESSION TAG SEQRES 1 A 297 GLY HIS MET ALA ALA SER THR ALA VAL ALA PRO VAL GLU SEQRES 2 A 297 ASN GLY ALA ALA PRO ALA VAL ALA HIS LYS ARG THR PHE SEQRES 3 A 297 ALA GLN ARG HIS SER GLU LEU ILE LYS HIS PHE PRO SER SEQRES 4 A 297 THR MET GLY VAL ASP ASP PHE MET GLY ARG VAL GLU VAL SEQRES 5 A 297 ALA LEU ALA GLY PHE GLY PHE THR GLY ASP ASN THR ILE SEQRES 6 A 297 ALA MET THR ASN LEU CYS ARG ASP GLU VAL THR GLN VAL SEQRES 7 A 297 LEU LYS ASP LYS ILE GLU ALA ILE PHE GLY SER SER PHE SEQRES 8 A 297 ASN THR ASN GLY LEU GLY GLY VAL LEU THR CYS GLY VAL SEQRES 9 A 297 THR GLY MET LYS ALA GLY LEU SER HIS SER PRO VAL CYS SEQRES 10 A 297 ASN GLY GLY ARG GLU ARG TYR VAL PHE PHE ALA PHE PRO SEQRES 11 A 297 HIS ILE ALA ILE ASN SER GLU GLY GLU MET GLY ALA LEU SEQRES 12 A 297 SER ARG PRO GLY ARG PRO LYS GLN SER CYS ALA CYS GLY SEQRES 13 A 297 ALA LEU LEU ALA ILE LEU ASN ALA PHE LYS VAL ASP GLY SEQRES 14 A 297 VAL GLU LYS SER CYS LYS VAL PRO GLY VAL HIS ASP PRO SEQRES 15 A 297 LEU ASP PRO GLU LEU THR ILE LEU GLN GLN ARG LEU ALA SEQRES 16 A 297 ARG ARG VAL ARG TYR GLU LYS LEU ASP VAL SER LYS LEU SEQRES 17 A 297 ASP LEU PRO GLY LEU THR SER VAL ALA GLU ARG THR ILE SEQRES 18 A 297 THR ASP ASP LEU GLU TYR LEU ILE GLU LYS ALA VAL ASP SEQRES 19 A 297 PRO ALA VAL ALA ASP TYR ALA VAL ILE THR GLY VAL GLN SEQRES 20 A 297 ILE HIS ASN TRP GLY LYS GLU LEU SER ALA SER GLY ASP SEQRES 21 A 297 ALA SER ILE GLU PHE VAL ALA PRO ALA LYS CYS TYR THR SEQRES 22 A 297 VAL VAL ASN GLY LEU LYS THR TYR ILE ASP LEU PRO GLN SEQRES 23 A 297 VAL PRO ALA LEU SER PRO ARG GLN ILE GLN THR SEQRES 1 B 297 GLY HIS MET ALA ALA SER THR ALA VAL ALA PRO VAL GLU SEQRES 2 B 297 ASN GLY ALA ALA PRO ALA VAL ALA HIS LYS ARG THR PHE SEQRES 3 B 297 ALA GLN ARG HIS SER GLU LEU ILE LYS HIS PHE PRO SER SEQRES 4 B 297 THR MET GLY VAL ASP ASP PHE MET GLY ARG VAL GLU VAL SEQRES 5 B 297 ALA LEU ALA GLY PHE GLY PHE THR GLY ASP ASN THR ILE SEQRES 6 B 297 ALA MET THR ASN LEU CYS ARG ASP GLU VAL THR GLN VAL SEQRES 7 B 297 LEU LYS ASP LYS ILE GLU ALA ILE PHE GLY SER SER PHE SEQRES 8 B 297 ASN THR ASN GLY LEU GLY GLY VAL LEU THR CYS GLY VAL SEQRES 9 B 297 THR GLY MET LYS ALA GLY LEU SER HIS SER PRO VAL CYS SEQRES 10 B 297 ASN GLY GLY ARG GLU ARG TYR VAL PHE PHE ALA PHE PRO SEQRES 11 B 297 HIS ILE ALA ILE ASN SER GLU GLY GLU MET GLY ALA LEU SEQRES 12 B 297 SER ARG PRO GLY ARG PRO LYS GLN SER CYS ALA CYS GLY SEQRES 13 B 297 ALA LEU LEU ALA ILE LEU ASN ALA PHE LYS VAL ASP GLY SEQRES 14 B 297 VAL GLU LYS SER CYS LYS VAL PRO GLY VAL HIS ASP PRO SEQRES 15 B 297 LEU ASP PRO GLU LEU THR ILE LEU GLN GLN ARG LEU ALA SEQRES 16 B 297 ARG ARG VAL ARG TYR GLU LYS LEU ASP VAL SER LYS LEU SEQRES 17 B 297 ASP LEU PRO GLY LEU THR SER VAL ALA GLU ARG THR ILE SEQRES 18 B 297 THR ASP ASP LEU GLU TYR LEU ILE GLU LYS ALA VAL ASP SEQRES 19 B 297 PRO ALA VAL ALA ASP TYR ALA VAL ILE THR GLY VAL GLN SEQRES 20 B 297 ILE HIS ASN TRP GLY LYS GLU LEU SER ALA SER GLY ASP SEQRES 21 B 297 ALA SER ILE GLU PHE VAL ALA PRO ALA LYS CYS TYR THR SEQRES 22 B 297 VAL VAL ASN GLY LEU LYS THR TYR ILE ASP LEU PRO GLN SEQRES 23 B 297 VAL PRO ALA LEU SER PRO ARG GLN ILE GLN THR HET ZN A 500 1 HET ZN B 500 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *64(H2 O) HELIX 1 AA1 VAL A 92 GLY A 105 1 14 HELIX 2 AA2 ASP A 122 VAL A 124 5 3 HELIX 3 AA3 THR A 125 PHE A 136 1 12 HELIX 4 AA4 GLY A 144 VAL A 148 5 5 HELIX 5 AA5 CYS A 151 LEU A 160 1 10 HELIX 6 AA6 CYS A 204 LYS A 215 1 12 HELIX 7 AA7 ASP A 233 GLU A 250 1 18 HELIX 8 AA8 ASP A 258 VAL A 282 1 25 HELIX 9 AA9 VAL B 92 PHE B 106 1 15 HELIX 10 AB1 ASP B 122 VAL B 124 5 3 HELIX 11 AB2 THR B 125 PHE B 136 1 12 HELIX 12 AB3 GLY B 144 VAL B 148 5 5 HELIX 13 AB4 CYS B 151 LEU B 160 1 10 HELIX 14 AB5 CYS B 204 ASP B 217 1 14 HELIX 15 AB6 VAL B 219 CYS B 223 5 5 HELIX 16 AB7 ASP B 233 GLU B 250 1 18 HELIX 17 AB8 ASP B 253 LEU B 257 5 5 HELIX 18 AB9 ASP B 258 VAL B 282 1 25 SHEET 1 AA1 4 MET A 90 GLY A 91 0 SHEET 2 AA1 4 PHE A 314 VAL A 324 -1 O VAL A 315 N MET A 90 SHEET 3 AA1 4 TYR A 289 ILE A 297 -1 N ILE A 297 O PHE A 314 SHEET 4 AA1 4 HIS A 180 ILE A 181 1 N ILE A 181 O GLN A 296 SHEET 1 AA2 6 SER A 139 ASN A 141 0 SHEET 2 AA2 6 ILE A 114 ASN A 118 1 N THR A 117 O PHE A 140 SHEET 3 AA2 6 TYR A 173 ALA A 177 1 O PHE A 176 N MET A 116 SHEET 4 AA2 6 TYR A 289 ILE A 297 1 O ALA A 290 N PHE A 175 SHEET 5 AA2 6 PHE A 314 VAL A 324 -1 O PHE A 314 N ILE A 297 SHEET 6 AA2 6 LEU A 327 TYR A 330 -1 O THR A 329 N THR A 322 SHEET 1 AA3 4 MET B 90 GLY B 91 0 SHEET 2 AA3 4 ILE B 312 VAL B 324 -1 O VAL B 315 N MET B 90 SHEET 3 AA3 4 ASP B 288 ASN B 299 -1 N THR B 293 O ALA B 318 SHEET 4 AA3 4 HIS B 180 ALA B 182 1 N ILE B 181 O GLN B 296 SHEET 1 AA4 6 SER B 139 ASN B 141 0 SHEET 2 AA4 6 ILE B 114 ASN B 118 1 N ALA B 115 O PHE B 140 SHEET 3 AA4 6 ARG B 172 ALA B 177 1 O PHE B 176 N MET B 116 SHEET 4 AA4 6 ASP B 288 ASN B 299 1 O ILE B 292 N PHE B 175 SHEET 5 AA4 6 ILE B 312 VAL B 324 -1 O ALA B 318 N THR B 293 SHEET 6 AA4 6 LEU B 327 TYR B 330 -1 O THR B 329 N THR B 322 LINK SG CYS A 120 ZN ZN A 500 1555 1555 2.30 LINK NE2 HIS A 180 ZN ZN A 500 1555 1555 2.09 LINK SG CYS A 204 ZN ZN A 500 1555 1555 2.36 LINK ZN ZN A 500 O HOH A 604 1555 1555 2.51 LINK SG CYS B 120 ZN ZN B 500 1555 1555 2.37 LINK NE2 HIS B 180 ZN ZN B 500 1555 1555 2.32 LINK SG CYS B 204 ZN ZN B 500 1555 1555 2.32 LINK ZN ZN B 500 O HOH B 631 1555 1555 2.03 CISPEP 1 LEU A 333 PRO A 334 0 -0.05 CISPEP 2 SER B 185 GLU B 186 0 0.02 SITE 1 AC1 4 CYS A 120 HIS A 180 CYS A 204 HOH A 604 SITE 1 AC2 4 CYS B 120 HIS B 180 CYS B 204 HOH B 631 CRYST1 43.835 80.218 143.753 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022813 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006956 0.00000