HEADER IMMUNE SYSTEM 24-MAY-16 5K65 TITLE CRYSTAL STRUCTURE OF VEGF BINDING IGG1-FC (FCAB CT6) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 9 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS IMMUNE SYSTEM, ANTIBODY ENGINEERING, IMMUNOGLOBULIN G1, FC FRAGMENT, KEYWDS 2 GLYCOSYLATIONS, CH3 DOMAIN, FCAB, VEGF, VASCULAR ENDOTHELIAL GROWTH KEYWDS 3 FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR A.HUMM,E.LOBNER,M.KITZMULLER,G.MLYNEK,C.OBINGER,K.DJINOVIC-CARUGO REVDAT 6 09-OCT-24 5K65 1 REMARK REVDAT 5 10-JAN-24 5K65 1 HETSYN LINK REVDAT 4 29-JUL-20 5K65 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 11-OCT-17 5K65 1 JRNL REVDAT 2 13-SEP-17 5K65 1 JRNL REVDAT 1 06-SEP-17 5K65 0 JRNL AUTH E.LOBNER,A.S.HUMM,G.MLYNEK,K.KUBINGER,M.KITZMULLER, JRNL AUTH 2 M.W.TRAXLMAYR,K.DJINOVIC-CARUGO,C.OBINGER JRNL TITL TWO-FACED FCAB PREVENTS POLYMERIZATION WITH VEGF AND REVEALS JRNL TITL 2 THERMODYNAMICS AND THE 2.15 ANGSTROM CRYSTAL STRUCTURE OF JRNL TITL 3 THE COMPLEX. JRNL REF MABS V. 9 1088 2017 JRNL REFN ESSN 1942-0870 JRNL PMID 28816592 JRNL DOI 10.1080/19420862.2017.1364825 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10-2247 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 46529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0367 - 7.3976 0.97 1613 148 0.1930 0.2155 REMARK 3 2 7.3976 - 5.8751 0.98 1660 142 0.1970 0.2031 REMARK 3 3 5.8751 - 5.1334 0.95 1591 135 0.1612 0.2189 REMARK 3 4 5.1334 - 4.6645 0.96 1633 138 0.1470 0.1609 REMARK 3 5 4.6645 - 4.3304 0.97 1636 145 0.1466 0.1733 REMARK 3 6 4.3304 - 4.0752 0.98 1629 147 0.1669 0.2259 REMARK 3 7 4.0752 - 3.8712 0.99 1636 139 0.1897 0.2120 REMARK 3 8 3.8712 - 3.7028 0.99 1685 141 0.2234 0.2232 REMARK 3 9 3.7028 - 3.5603 0.99 1670 143 0.2205 0.2688 REMARK 3 10 3.5603 - 3.4374 0.98 1625 141 0.2286 0.2791 REMARK 3 11 3.4374 - 3.3300 0.98 1694 147 0.2390 0.2751 REMARK 3 12 3.3300 - 3.2348 0.98 1647 147 0.2458 0.2521 REMARK 3 13 3.2348 - 3.1497 0.98 1660 144 0.2679 0.3017 REMARK 3 14 3.1497 - 3.0729 0.97 1617 145 0.3052 0.2784 REMARK 3 15 3.0729 - 3.0030 0.96 1614 143 0.3118 0.2994 REMARK 3 16 3.0030 - 2.9391 0.97 1643 139 0.3257 0.3547 REMARK 3 17 2.9391 - 2.8803 0.98 1628 142 0.3278 0.3455 REMARK 3 18 2.8803 - 2.8260 0.98 1650 145 0.3227 0.3243 REMARK 3 19 2.8260 - 2.7755 0.99 1671 144 0.3352 0.3656 REMARK 3 20 2.7755 - 2.7285 0.99 1665 143 0.3364 0.3743 REMARK 3 21 2.7285 - 2.6845 0.98 1675 146 0.3461 0.3484 REMARK 3 22 2.6845 - 2.6432 0.98 1619 135 0.3330 0.3859 REMARK 3 23 2.6432 - 2.6043 0.98 1695 146 0.3654 0.3363 REMARK 3 24 2.6043 - 2.5676 0.99 1645 137 0.3526 0.3268 REMARK 3 25 2.5676 - 2.5329 0.99 1664 148 0.3604 0.4527 REMARK 3 26 2.5329 - 2.5000 0.99 1655 139 0.3739 0.3480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3743 REMARK 3 ANGLE : 0.633 5130 REMARK 3 CHIRALITY : 0.045 584 REMARK 3 PLANARITY : 0.003 632 REMARK 3 DIHEDRAL : 9.446 2253 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6262 -24.4515 46.5917 REMARK 3 T TENSOR REMARK 3 T11: 0.9962 T22: 0.7600 REMARK 3 T33: 0.6584 T12: -0.1005 REMARK 3 T13: 0.0264 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.2570 L22: 5.0549 REMARK 3 L33: 2.7094 L12: -0.8618 REMARK 3 L13: -1.4816 L23: -1.0589 REMARK 3 S TENSOR REMARK 3 S11: -0.2410 S12: -0.3144 S13: -0.1255 REMARK 3 S21: 0.9662 S22: -0.1483 S23: 0.0301 REMARK 3 S31: -0.2418 S32: 0.2036 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 445 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4630 -20.8167 14.4172 REMARK 3 T TENSOR REMARK 3 T11: 0.5293 T22: 0.5359 REMARK 3 T33: 0.6112 T12: 0.0218 REMARK 3 T13: -0.0288 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 2.6658 L22: 3.5961 REMARK 3 L33: 3.1345 L12: 0.5915 REMARK 3 L13: 0.5497 L23: 1.6764 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: -0.0648 S13: 0.1216 REMARK 3 S21: 0.0780 S22: -0.3033 S23: 0.4813 REMARK 3 S31: -0.3905 S32: -0.3424 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3933 -32.8630 27.0691 REMARK 3 T TENSOR REMARK 3 T11: 0.8946 T22: 1.3495 REMARK 3 T33: 1.0251 T12: -0.0596 REMARK 3 T13: -0.1699 T23: 0.1189 REMARK 3 L TENSOR REMARK 3 L11: 3.6810 L22: 2.3883 REMARK 3 L33: 0.7173 L12: 0.2785 REMARK 3 L13: 0.2112 L23: 1.0904 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: -1.6088 S13: -0.4803 REMARK 3 S21: 0.8947 S22: -0.0179 S23: -0.3317 REMARK 3 S31: 0.0130 S32: 0.0596 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 341 THROUGH 445 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8570 -18.9979 6.5434 REMARK 3 T TENSOR REMARK 3 T11: 0.5848 T22: 0.5663 REMARK 3 T33: 0.6071 T12: -0.0815 REMARK 3 T13: -0.0218 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 2.7197 L22: 3.4101 REMARK 3 L33: 3.2834 L12: -0.5928 REMARK 3 L13: 0.3833 L23: -0.3008 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: 0.2210 S13: 0.0562 REMARK 3 S21: -0.0804 S22: -0.0546 S23: -0.3502 REMARK 3 S31: -0.5241 S32: 0.3016 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : C(110) REMARK 200 OPTICS : CRL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS V.OCT-2015 REMARK 200 DATA SCALING SOFTWARE : XDS V.OCT-2015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25171 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.028 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.12540 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 1.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.10-2247 REMARK 200 STARTING MODEL: 5K64 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS_C6 0.03M OF EACH NPS: (SODIUM REMARK 280 NITRATE, DISODIUM HYDROGEN PHOSPHATE, AMMONIUM SULFATE). 0.1M REMARK 280 MOPS/HEPES-NA PH 7.5 10% W/V PEG 8000, 20% V/V ETHYLENE GLYCOL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.15000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 632 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 LEU A 235 REMARK 465 PRO A 446 REMARK 465 THR A 447 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 PRO B 227 REMARK 465 PRO B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 GLU B 233 REMARK 465 LEU B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 GLY B 237 REMARK 465 PRO B 238 REMARK 465 PRO B 446 REMARK 465 THR B 447 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU B 309 O HOH B 602 1.36 REMARK 500 HD21 ASN B 297 O5 NAG D 1 1.53 REMARK 500 H ASN A 390 O HOH A 606 1.55 REMARK 500 H LYS A 338 O HOH A 607 1.58 REMARK 500 O VAL A 266 H TYR A 300 1.59 REMARK 500 O HOH A 605 O HOH A 631 1.88 REMARK 500 O HOH A 634 O HOH A 636 1.94 REMARK 500 O HOH A 626 O HOH A 638 2.01 REMARK 500 OE1 GLU A 430 O HOH A 601 2.03 REMARK 500 O3 NAG D 1 O5 NAG D 2 2.04 REMARK 500 OG1 THR A 289 O HOH A 602 2.06 REMARK 500 N SER B 239 OD2 ASP B 265 2.13 REMARK 500 OG1 THR B 256 O HOH B 601 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 270 60.12 64.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 642 DISTANCE = 6.23 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG D 1 DBREF 5K65 A 225 447 UNP P01857 IGHG1_HUMAN 108 330 DBREF 5K65 B 225 447 UNP P01857 IGHG1_HUMAN 108 330 SEQADV 5K65 ARG A 359 UNP P01857 THR 242 ENGINEERED MUTATION SEQADV 5K65 PHE A 360 UNP P01857 LYS 243 ENGINEERED MUTATION SEQADV 5K65 TYR A 361 UNP P01857 ASN 244 ENGINEERED MUTATION SEQADV 5K65 ASP A 388 UNP P01857 GLU 271 ENGINEERED MUTATION SEQADV 5K65 ILE A 389 UNP P01857 ASN 272 ENGINEERED MUTATION SEQADV 5K65 PHE A 389A UNP P01857 INSERTION SEQADV 5K65 PRO A 389B UNP P01857 INSERTION SEQADV 5K65 ASN A 389C UNP P01857 INSERTION SEQADV 5K65 GLY A 389D UNP P01857 INSERTION SEQADV 5K65 LEU A 389E UNP P01857 INSERTION SEQADV 5K65 PRO A 413 UNP P01857 ASP 296 ENGINEERED MUTATION SEQADV 5K65 TYR A 414 UNP P01857 LYS 297 ENGINEERED MUTATION SEQADV 5K65 PRO A 415 UNP P01857 SER 298 ENGINEERED MUTATION SEQADV 5K65 SER A 416 UNP P01857 ARG 299 ENGINEERED MUTATION SEQADV 5K65 LEU A 418 UNP P01857 GLN 301 ENGINEERED MUTATION SEQADV 5K65 MET A 419 UNP P01857 GLN 302 ENGINEERED MUTATION SEQADV 5K65 THR A 421 UNP P01857 ASN 304 ENGINEERED MUTATION SEQADV 5K65 ARG A 422 UNP P01857 VAL 305 ENGINEERED MUTATION SEQADV 5K65 HIS A 440 UNP P01857 SER 323 ENGINEERED MUTATION SEQADV 5K65 GLU A 442 UNP P01857 SER 325 ENGINEERED MUTATION SEQADV 5K65 TYR A 443 UNP P01857 LEU 326 ENGINEERED MUTATION SEQADV 5K65 GLN A 444 UNP P01857 SER 327 ENGINEERED MUTATION SEQADV 5K65 TRP A 445 UNP P01857 PRO 328 ENGINEERED MUTATION SEQADV 5K65 PRO A 446 UNP P01857 GLY 329 ENGINEERED MUTATION SEQADV 5K65 THR A 447 UNP P01857 LYS 330 ENGINEERED MUTATION SEQADV 5K65 ARG B 359 UNP P01857 THR 242 ENGINEERED MUTATION SEQADV 5K65 PHE B 360 UNP P01857 LYS 243 ENGINEERED MUTATION SEQADV 5K65 TYR B 361 UNP P01857 ASN 244 ENGINEERED MUTATION SEQADV 5K65 ASP B 388 UNP P01857 ENGINEERED MUTATION SEQADV 5K65 ILE B 389 UNP P01857 ENGINEERED MUTATION SEQADV 5K65 PHE B 389A UNP P01857 INSERTION SEQADV 5K65 PRO B 389B UNP P01857 INSERTION SEQADV 5K65 ASN B 389C UNP P01857 INSERTION SEQADV 5K65 GLY B 389D UNP P01857 GLU 271 INSERTION SEQADV 5K65 LEU B 389E UNP P01857 ASN 272 INSERTION SEQADV 5K65 PRO B 413 UNP P01857 ASP 296 ENGINEERED MUTATION SEQADV 5K65 TYR B 414 UNP P01857 LYS 297 ENGINEERED MUTATION SEQADV 5K65 PRO B 415 UNP P01857 SER 298 ENGINEERED MUTATION SEQADV 5K65 SER B 416 UNP P01857 ARG 299 ENGINEERED MUTATION SEQADV 5K65 LEU B 418 UNP P01857 GLN 301 ENGINEERED MUTATION SEQADV 5K65 MET B 419 UNP P01857 GLN 302 ENGINEERED MUTATION SEQADV 5K65 THR B 421 UNP P01857 ASN 304 ENGINEERED MUTATION SEQADV 5K65 ARG B 422 UNP P01857 VAL 305 ENGINEERED MUTATION SEQADV 5K65 HIS B 440 UNP P01857 SER 323 ENGINEERED MUTATION SEQADV 5K65 GLU B 442 UNP P01857 SER 325 ENGINEERED MUTATION SEQADV 5K65 TYR B 443 UNP P01857 LEU 326 ENGINEERED MUTATION SEQADV 5K65 GLN B 444 UNP P01857 SER 327 ENGINEERED MUTATION SEQADV 5K65 TRP B 445 UNP P01857 PRO 328 ENGINEERED MUTATION SEQADV 5K65 PRO B 446 UNP P01857 GLY 329 ENGINEERED MUTATION SEQADV 5K65 THR B 447 UNP P01857 LYS 330 ENGINEERED MUTATION SEQRES 1 A 228 THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY SEQRES 2 A 228 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 3 A 228 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 4 A 228 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 5 A 228 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 6 A 228 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 7 A 228 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 8 A 228 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 9 A 228 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 10 A 228 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 11 A 228 ARG ASP GLU LEU ARG PHE TYR GLN VAL SER LEU THR CYS SEQRES 12 A 228 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 13 A 228 TRP GLU SER ASN GLY GLN PRO ASP ILE PHE PRO ASN GLY SEQRES 14 A 228 LEU ASN TYR LYS THR THR PRO PRO VAL LEU ASP SER ASP SEQRES 15 A 228 GLY SER PHE PHE LEU TYR SER LYS LEU THR VAL PRO TYR SEQRES 16 A 228 PRO SER TRP LEU MET GLY THR ARG PHE SER CYS SER VAL SEQRES 17 A 228 MET HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS HIS SEQRES 18 A 228 LEU GLU TYR GLN TRP PRO THR SEQRES 1 B 228 THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY SEQRES 2 B 228 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 3 B 228 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 4 B 228 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 5 B 228 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 6 B 228 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 7 B 228 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 8 B 228 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 9 B 228 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 10 B 228 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 11 B 228 ARG ASP GLU LEU ARG PHE TYR GLN VAL SER LEU THR CYS SEQRES 12 B 228 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 13 B 228 TRP GLU SER ASN GLY GLN PRO ASP ILE PHE PRO ASN GLY SEQRES 14 B 228 LEU ASN TYR LYS THR THR PRO PRO VAL LEU ASP SER ASP SEQRES 15 B 228 GLY SER PHE PHE LEU TYR SER LYS LEU THR VAL PRO TYR SEQRES 16 B 228 PRO SER TRP LEU MET GLY THR ARG PHE SER CYS SER VAL SEQRES 17 B 228 MET HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS HIS SEQRES 18 B 228 LEU GLU TYR GLN TRP PRO THR HET NAG C 1 25 HET NAG C 2 26 HET BMA C 3 19 HET MAN C 4 20 HET NAG C 5 27 HET MAN C 6 21 HET FUC C 7 20 HET NAG D 1 26 HET NAG D 2 26 HET BMA D 3 19 HET MAN D 4 21 HET MAN D 5 21 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 FUC C6 H12 O5 FORMUL 5 HOH *81(H2 O) HELIX 1 AA1 LYS A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 SER A 354 PHE A 360 5 7 HELIX 4 AA4 TYR A 414 MET A 419 1 6 HELIX 5 AA5 LEU A 432 TYR A 436 5 5 HELIX 6 AA6 LYS B 246 MET B 252 1 7 HELIX 7 AA7 LEU B 309 ASN B 315 1 7 HELIX 8 AA8 SER B 354 LEU B 358 5 5 HELIX 9 AA9 GLN B 386 PHE B 389A 5 5 HELIX 10 AB1 TYR B 414 MET B 419 1 6 HELIX 11 AB2 LEU B 432 TYR B 436 5 5 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA1 4 TYR A 300 THR A 307 -1 O TYR A 300 N VAL A 266 SHEET 4 AA1 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 AA2 4 SER A 239 PHE A 243 0 SHEET 2 AA2 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA2 4 TYR A 300 THR A 307 -1 O TYR A 300 N VAL A 266 SHEET 4 AA2 4 GLU A 293 GLU A 294 -1 N GLU A 293 O ARG A 301 SHEET 1 AA3 4 VAL A 282 VAL A 284 0 SHEET 2 AA3 4 LYS A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA3 4 TYR A 319 SER A 324 -1 O LYS A 320 N TYR A 278 SHEET 4 AA3 4 ILE A 332 ILE A 336 -1 O LYS A 334 N CYS A 321 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA4 4 PHE A 404 PRO A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA4 4 ASN A 390 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AA5 4 GLN A 347 LEU A 351 0 SHEET 2 AA5 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA5 4 PHE A 404 PRO A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA5 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA6 3 ALA A 378 SER A 383 0 SHEET 2 AA6 3 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 3 AA6 3 THR A 437 LEU A 441 -1 O LYS A 439 N CYS A 425 SHEET 1 AA7 4 VAL B 240 PHE B 243 0 SHEET 2 AA7 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 AA7 4 TYR B 300 THR B 307 -1 O SER B 304 N CYS B 261 SHEET 4 AA7 4 LYS B 288 THR B 289 -1 N LYS B 288 O VAL B 305 SHEET 1 AA8 4 VAL B 240 PHE B 243 0 SHEET 2 AA8 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 AA8 4 TYR B 300 THR B 307 -1 O SER B 304 N CYS B 261 SHEET 4 AA8 4 GLU B 293 GLU B 294 -1 N GLU B 293 O ARG B 301 SHEET 1 AA9 4 VAL B 282 VAL B 284 0 SHEET 2 AA9 4 LYS B 274 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 AA9 4 TYR B 319 SER B 324 -1 O LYS B 320 N TYR B 278 SHEET 4 AA9 4 ILE B 332 ILE B 336 -1 O ILE B 336 N TYR B 319 SHEET 1 AB1 4 GLN B 347 LEU B 351 0 SHEET 2 AB1 4 GLN B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 AB1 4 PHE B 404 PRO B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AB1 4 ASN B 390 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 AB2 4 GLN B 347 LEU B 351 0 SHEET 2 AB2 4 GLN B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 AB2 4 PHE B 404 PRO B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AB2 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 AB3 3 ALA B 378 SER B 383 0 SHEET 2 AB3 3 PHE B 423 MET B 428 -1 O SER B 426 N GLU B 380 SHEET 3 AB3 3 THR B 437 LEU B 441 -1 O LYS B 439 N CYS B 425 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.03 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.03 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.03 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.03 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 7 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 6 1555 1555 1.43 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.45 CISPEP 1 TYR A 373 PRO A 374 0 -5.23 CISPEP 2 TYR B 373 PRO B 374 0 -4.89 CRYST1 58.490 72.000 168.300 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017097 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005942 0.00000