HEADER TRANSFERASE/TRANSFERASE INHIBITOR 25-MAY-16 5K76 TITLE IRAK4 IN COMPLEX WITH COMPOUND 28 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 160-460; COMPND 5 SYNONYM: IRAK-4,RENAL CARCINOMA ANTIGEN NY-REN-64; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRAK4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, KINASE, PROTEIN TYROSINE KINASE, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.D.FERGUSON REVDAT 3 27-SEP-23 5K76 1 REMARK REVDAT 2 10-JAN-18 5K76 1 JRNL REVDAT 1 06-DEC-17 5K76 0 JRNL AUTH J.S.SCOTT,S.L.DEGORCE,R.ANJUM,J.CULSHAW,R.D.M.DAVIES, JRNL AUTH 2 N.L.DAVIES,K.S.DILLMAN,J.E.DOWLING,L.DREW,A.D.FERGUSON, JRNL AUTH 3 S.D.GROOMBRIDGE,C.T.HALSALL,J.A.HUDSON,S.LAMONT,N.A.LINDSAY, JRNL AUTH 4 S.K.MARDEN,M.F.MAYO,J.E.PEASE,D.R.PERKINS,J.H.PINK,G.R.ROBB, JRNL AUTH 5 A.ROSEN,M.SHEN,C.MCWHIRTER,D.WU JRNL TITL DISCOVERY AND OPTIMIZATION OF PYRROLOPYRIMIDINE INHIBITORS JRNL TITL 2 OF INTERLEUKIN-1 RECEPTOR ASSOCIATED KINASE 4 (IRAK4) FOR JRNL TITL 3 THE TREATMENT OF MUTANT MYD88L265P DIFFUSE LARGE B-CELL JRNL TITL 4 LYMPHOMA. JRNL REF J. MED. CHEM. V. 60 10071 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 29172502 JRNL DOI 10.1021/ACS.JMEDCHEM.7B01290 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 20598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1027 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.89 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3077 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2610 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2913 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.33 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 164 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4407 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.28810 REMARK 3 B22 (A**2) : -23.80060 REMARK 3 B33 (A**2) : 19.51240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.410 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.802 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.314 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.810 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.319 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4563 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6155 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1658 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 132 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 661 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4563 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 592 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5086 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.33 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.99 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -17.0813 -34.7412 -16.7444 REMARK 3 T TENSOR REMARK 3 T11: -0.3323 T22: 0.0263 REMARK 3 T33: -0.1788 T12: -0.0374 REMARK 3 T13: 0.0484 T23: -0.0762 REMARK 3 L TENSOR REMARK 3 L11: 4.4723 L22: 1.9643 REMARK 3 L33: 3.2900 L12: 0.2232 REMARK 3 L13: -1.4238 L23: -0.0921 REMARK 3 S TENSOR REMARK 3 S11: 0.1545 S12: -0.1777 S13: -0.4951 REMARK 3 S21: -0.0763 S22: -0.2204 S23: -0.4339 REMARK 3 S31: -0.0231 S32: 0.4955 S33: 0.0659 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -56.3436 -27.9600 -14.9958 REMARK 3 T TENSOR REMARK 3 T11: -0.2418 T22: 0.0957 REMARK 3 T33: -0.2066 T12: 0.0029 REMARK 3 T13: -0.0723 T23: -0.0833 REMARK 3 L TENSOR REMARK 3 L11: 2.1975 L22: 3.5597 REMARK 3 L33: 2.3239 L12: -0.9444 REMARK 3 L13: 0.0531 L23: 1.5261 REMARK 3 S TENSOR REMARK 3 S11: 0.2710 S12: 0.4219 S13: -0.2906 REMARK 3 S21: -0.2413 S22: -0.5277 S23: 0.5846 REMARK 3 S31: 0.1140 S32: -0.4708 S33: 0.2568 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8-7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20750 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 72.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.82500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2NRU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M AMMONIUM SULFATE, 0.1 M HEPES, REMARK 280 PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.02550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.54950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.03900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.02550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.54950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.03900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.02550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.54950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.03900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.02550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.54950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.03900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 160 REMARK 465 SER A 161 REMARK 465 ASP A 162 REMARK 465 THR A 163 REMARK 465 ARG A 164 REMARK 465 VAL A 187 REMARK 465 GLY A 188 REMARK 465 GLY A 195 REMARK 465 GLY A 196 REMARK 465 PHE A 197 REMARK 465 GLY A 198 REMARK 465 ALA A 216 REMARK 465 ALA A 217 REMARK 465 MET A 218 REMARK 465 VAL A 219 REMARK 465 ASP A 220 REMARK 465 ILE A 221 REMARK 465 THR A 222 REMARK 465 ASP A 254 REMARK 465 GLY A 255 REMARK 465 ASP A 256 REMARK 465 SER A 336 REMARK 465 GLU A 337 REMARK 465 LYS A 338 REMARK 465 PHE A 339 REMARK 465 ALA A 340 REMARK 465 GLN A 341 REMARK 465 ALA A 459 REMARK 465 SER A 460 REMARK 465 VAL B 160 REMARK 465 SER B 161 REMARK 465 ASP B 162 REMARK 465 THR B 163 REMARK 465 ALA B 216 REMARK 465 ALA B 217 REMARK 465 MET B 218 REMARK 465 VAL B 219 REMARK 465 ASP B 220 REMARK 465 SER B 336 REMARK 465 GLU B 337 REMARK 465 LYS B 338 REMARK 465 PHE B 339 REMARK 465 ALA B 340 REMARK 465 GLN B 341 REMARK 465 THR B 342 REMARK 465 ALA B 459 REMARK 465 SER B 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 207 -19.43 71.33 REMARK 500 ARG A 310 -9.88 74.96 REMARK 500 ASP A 311 48.27 -141.01 REMARK 500 ASP A 329 86.78 54.49 REMARK 500 LYS A 417 31.04 -87.17 REMARK 500 ASN B 207 -17.69 71.76 REMARK 500 GLU B 224 -32.65 98.33 REMARK 500 ARG B 310 -8.88 74.50 REMARK 500 ASP B 311 48.17 -141.98 REMARK 500 ASP B 329 86.60 54.63 REMARK 500 HIS B 390 33.76 -99.53 REMARK 500 LYS B 417 31.75 -87.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6R1 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6R1 B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K72 RELATED DB: PDB REMARK 900 RELATED ID: 5K75 RELATED DB: PDB REMARK 900 RELATED ID: 5K7G RELATED DB: PDB REMARK 900 RELATED ID: 5K7I RELATED DB: PDB DBREF 5K76 A 160 460 UNP Q9NWZ3 IRAK4_HUMAN 160 460 DBREF 5K76 B 160 460 UNP Q9NWZ3 IRAK4_HUMAN 160 460 SEQRES 1 A 301 VAL SER ASP THR ARG PHE HIS SER PHE SER PHE TYR GLU SEQRES 2 A 301 LEU LYS ASN VAL THR ASN ASN PHE ASP GLU ARG PRO ILE SEQRES 3 A 301 SER VAL GLY GLY ASN LYS MET GLY GLU GLY GLY PHE GLY SEQRES 4 A 301 VAL VAL TYR LYS GLY TYR VAL ASN ASN THR THR VAL ALA SEQRES 5 A 301 VAL LYS LYS LEU ALA ALA MET VAL ASP ILE THR THR GLU SEQRES 6 A 301 GLU LEU LYS GLN GLN PHE ASP GLN GLU ILE LYS VAL MET SEQRES 7 A 301 ALA LYS CYS GLN HIS GLU ASN LEU VAL GLU LEU LEU GLY SEQRES 8 A 301 PHE SER SER ASP GLY ASP ASP LEU CYS LEU VAL TYR VAL SEQRES 9 A 301 TYR MET PRO ASN GLY SER LEU LEU ASP ARG LEU SER CYS SEQRES 10 A 301 LEU ASP GLY THR PRO PRO LEU SER TRP HIS MET ARG CYS SEQRES 11 A 301 LYS ILE ALA GLN GLY ALA ALA ASN GLY ILE ASN PHE LEU SEQRES 12 A 301 HIS GLU ASN HIS HIS ILE HIS ARG ASP ILE LYS SER ALA SEQRES 13 A 301 ASN ILE LEU LEU ASP GLU ALA PHE THR ALA LYS ILE SER SEQRES 14 A 301 ASP PHE GLY LEU ALA ARG ALA SER GLU LYS PHE ALA GLN SEQRES 15 A 301 THR VAL MET TPO SEP ARG ILE VAL GLY THR THR ALA TYR SEQRES 16 A 301 MET ALA PRO GLU ALA LEU ARG GLY GLU ILE THR PRO LYS SEQRES 17 A 301 SER ASP ILE TYR SER PHE GLY VAL VAL LEU LEU GLU ILE SEQRES 18 A 301 ILE THR GLY LEU PRO ALA VAL ASP GLU HIS ARG GLU PRO SEQRES 19 A 301 GLN LEU LEU LEU ASP ILE LYS GLU GLU ILE GLU ASP GLU SEQRES 20 A 301 GLU LYS THR ILE GLU ASP TYR ILE ASP LYS LYS MET ASN SEQRES 21 A 301 ASP ALA ASP SER THR SER VAL GLU ALA MET TYR SER VAL SEQRES 22 A 301 ALA SER GLN CYS LEU HIS GLU LYS LYS ASN LYS ARG PRO SEQRES 23 A 301 ASP ILE LYS LYS VAL GLN GLN LEU LEU GLN GLU MET THR SEQRES 24 A 301 ALA SER SEQRES 1 B 301 VAL SER ASP THR ARG PHE HIS SER PHE SER PHE TYR GLU SEQRES 2 B 301 LEU LYS ASN VAL THR ASN ASN PHE ASP GLU ARG PRO ILE SEQRES 3 B 301 SER VAL GLY GLY ASN LYS MET GLY GLU GLY GLY PHE GLY SEQRES 4 B 301 VAL VAL TYR LYS GLY TYR VAL ASN ASN THR THR VAL ALA SEQRES 5 B 301 VAL LYS LYS LEU ALA ALA MET VAL ASP ILE THR THR GLU SEQRES 6 B 301 GLU LEU LYS GLN GLN PHE ASP GLN GLU ILE LYS VAL MET SEQRES 7 B 301 ALA LYS CYS GLN HIS GLU ASN LEU VAL GLU LEU LEU GLY SEQRES 8 B 301 PHE SER SER ASP GLY ASP ASP LEU CYS LEU VAL TYR VAL SEQRES 9 B 301 TYR MET PRO ASN GLY SER LEU LEU ASP ARG LEU SER CYS SEQRES 10 B 301 LEU ASP GLY THR PRO PRO LEU SER TRP HIS MET ARG CYS SEQRES 11 B 301 LYS ILE ALA GLN GLY ALA ALA ASN GLY ILE ASN PHE LEU SEQRES 12 B 301 HIS GLU ASN HIS HIS ILE HIS ARG ASP ILE LYS SER ALA SEQRES 13 B 301 ASN ILE LEU LEU ASP GLU ALA PHE THR ALA LYS ILE SER SEQRES 14 B 301 ASP PHE GLY LEU ALA ARG ALA SER GLU LYS PHE ALA GLN SEQRES 15 B 301 THR VAL MET TPO SEP ARG ILE VAL GLY THR THR ALA TYR SEQRES 16 B 301 MET ALA PRO GLU ALA LEU ARG GLY GLU ILE THR PRO LYS SEQRES 17 B 301 SER ASP ILE TYR SER PHE GLY VAL VAL LEU LEU GLU ILE SEQRES 18 B 301 ILE THR GLY LEU PRO ALA VAL ASP GLU HIS ARG GLU PRO SEQRES 19 B 301 GLN LEU LEU LEU ASP ILE LYS GLU GLU ILE GLU ASP GLU SEQRES 20 B 301 GLU LYS THR ILE GLU ASP TYR ILE ASP LYS LYS MET ASN SEQRES 21 B 301 ASP ALA ASP SER THR SER VAL GLU ALA MET TYR SER VAL SEQRES 22 B 301 ALA SER GLN CYS LEU HIS GLU LYS LYS ASN LYS ARG PRO SEQRES 23 B 301 ASP ILE LYS LYS VAL GLN GLN LEU LEU GLN GLU MET THR SEQRES 24 B 301 ALA SER MODRES 5K76 TPO A 345 THR MODIFIED RESIDUE MODRES 5K76 SEP A 346 SER MODIFIED RESIDUE MODRES 5K76 TPO B 345 THR MODIFIED RESIDUE MODRES 5K76 SEP B 346 SER MODIFIED RESIDUE HET TPO A 345 11 HET SEP A 346 10 HET TPO B 345 11 HET SEP B 346 10 HET 6R1 A 501 28 HET 6R1 B 501 28 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM 6R1 ~{N}-(4-MORPHOLIN-4-YLCYCLOHEXYL)-5-(OXAN-4-YL)-7~{H}- HETNAM 2 6R1 PYRROLO[2,3-D]PYRIMIDIN-4-AMINE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 3 6R1 2(C21 H31 N5 O2) FORMUL 5 HOH *47(H2 O) HELIX 1 AA1 SER A 169 THR A 177 1 9 HELIX 2 AA2 GLU A 225 CYS A 240 1 16 HELIX 3 AA3 SER A 269 SER A 275 1 7 HELIX 4 AA4 CYS A 276 THR A 280 5 5 HELIX 5 AA5 SER A 284 ASN A 305 1 22 HELIX 6 AA6 ALA A 356 ARG A 361 1 6 HELIX 7 AA7 THR A 365 GLY A 383 1 19 HELIX 8 AA8 LEU A 395 LEU A 397 5 3 HELIX 9 AA9 ASP A 398 ASP A 405 1 8 HELIX 10 AB1 THR A 409 ILE A 414 1 6 HELIX 11 AB2 ASP A 422 LEU A 437 1 16 HELIX 12 AB3 LYS A 440 ARG A 444 5 5 HELIX 13 AB4 ASP A 446 THR A 458 1 13 HELIX 14 AB5 SER B 169 THR B 177 1 9 HELIX 15 AB6 PRO B 184 GLY B 188 5 5 HELIX 16 AB7 GLU B 224 CYS B 240 1 17 HELIX 17 AB8 SER B 269 SER B 275 1 7 HELIX 18 AB9 CYS B 276 THR B 280 5 5 HELIX 19 AC1 SER B 284 ASN B 305 1 22 HELIX 20 AC2 ALA B 356 ARG B 361 1 6 HELIX 21 AC3 THR B 365 GLY B 383 1 19 HELIX 22 AC4 LEU B 395 LEU B 397 5 3 HELIX 23 AC5 ASP B 398 ASP B 405 1 8 HELIX 24 AC6 THR B 409 ILE B 414 1 6 HELIX 25 AC7 ASP B 422 LEU B 437 1 16 HELIX 26 AC8 LYS B 440 ARG B 444 5 5 HELIX 27 AC9 ASP B 446 THR B 458 1 13 SHEET 1 AA1 6 HIS A 166 SER A 167 0 SHEET 2 AA1 6 LEU A 248 SER A 252 1 O LEU A 249 N HIS A 166 SHEET 3 AA1 6 CYS A 259 VAL A 263 -1 O VAL A 261 N GLY A 250 SHEET 4 AA1 6 THR A 208 LYS A 214 -1 N LYS A 213 O LEU A 260 SHEET 5 AA1 6 VAL A 200 VAL A 205 -1 N GLY A 203 O VAL A 210 SHEET 6 AA1 6 LYS A 191 GLY A 193 -1 N GLY A 193 O VAL A 200 SHEET 1 AA2 2 ILE A 317 LEU A 319 0 SHEET 2 AA2 2 ALA A 325 ILE A 327 -1 O LYS A 326 N LEU A 318 SHEET 1 AA3 2 VAL A 343 MET A 344 0 SHEET 2 AA3 2 GLU A 363 ILE A 364 -1 O ILE A 364 N VAL A 343 SHEET 1 AA4 6 HIS B 166 SER B 167 0 SHEET 2 AA4 6 LEU B 248 SER B 252 1 O LEU B 249 N HIS B 166 SHEET 3 AA4 6 CYS B 259 VAL B 263 -1 O VAL B 261 N LEU B 249 SHEET 4 AA4 6 THR B 208 LYS B 214 -1 N ALA B 211 O TYR B 262 SHEET 5 AA4 6 VAL B 199 VAL B 205 -1 N TYR B 201 O VAL B 212 SHEET 6 AA4 6 LYS B 191 GLU B 194 -1 N MET B 192 O VAL B 200 SHEET 1 AA5 2 ILE B 317 LEU B 319 0 SHEET 2 AA5 2 ALA B 325 ILE B 327 -1 O LYS B 326 N LEU B 318 LINK C MET A 344 N TPO A 345 1555 1555 1.35 LINK C TPO A 345 N SEP A 346 1555 1555 1.34 LINK C SEP A 346 N ARG A 347 1555 1555 1.35 LINK C MET B 344 N TPO B 345 1555 1555 1.35 LINK C TPO B 345 N SEP B 346 1555 1555 1.34 LINK C SEP B 346 N ARG B 347 1555 1555 1.36 CISPEP 1 GLU A 392 PRO A 393 0 3.24 CISPEP 2 GLU B 392 PRO B 393 0 4.28 SITE 1 AC1 10 MET A 192 ALA A 211 LYS A 213 TYR A 262 SITE 2 AC1 10 VAL A 263 TYR A 264 MET A 265 ASP A 272 SITE 3 AC1 10 LEU A 277 LEU A 318 SITE 1 AC2 11 MET B 192 VAL B 200 ALA B 211 LYS B 213 SITE 2 AC2 11 TYR B 262 VAL B 263 TYR B 264 MET B 265 SITE 3 AC2 11 ASP B 272 LEU B 277 LEU B 318 CRYST1 88.051 127.099 142.078 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011357 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007038 0.00000