data_5K7N # _entry.id 5K7N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5K7N pdb_00005k7n 10.2210/pdb5k7n/pdb WWPDB D_1000221815 ? ? EMDB EMD-8216 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-04-05 2 'Structure model' 1 1 2017-04-12 3 'Structure model' 1 2 2017-09-13 4 'Structure model' 1 3 2018-08-22 5 'Structure model' 1 4 2019-12-18 6 'Structure model' 1 5 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Author supporting evidence' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 4 'Structure model' pdbx_related_exp_data_set 3 5 'Structure model' pdbx_audit_support 4 6 'Structure model' chem_comp_atom 5 6 'Structure model' chem_comp_bond 6 6 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_pdbx_related_exp_data_set.data_reference' 3 5 'Structure model' '_pdbx_audit_support.funding_organization' 4 6 'Structure model' '_database_2.pdbx_DOI' 5 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5K7N _pdbx_database_status.recvd_initial_deposition_date 2016-05-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-8216 'associated EM volume' EMDB . EMD-8217 'other EM volume' EMDB . EMD-8218 'other EM volume' EMDB . EMD-8219 'other EM volume' EMDB . EMD-8220 'other EM volume' EMDB . EMD-8221 'other EM volume' EMDB . EMD-8222 'other EM volume' PDB . 5K7O unspecified PDB . 5K7P unspecified PDB . 5K7Q unspecified PDB . 5K7R unspecified PDB . 5K7S unspecified PDB . 5K7T unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'de la Cruz, M.J.' 1 ? 'Hattne, J.' 2 ? 'Shi, D.' 3 ? 'Seidler, P.' 4 ? 'Rodriguez, J.' 5 ? 'Reyes, F.E.' 6 ? 'Sawaya, M.R.' 7 ? 'Cascio, D.' 8 ? 'Eisenberg, D.' 9 ? 'Gonen, T.' 10 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Methods' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1548-7105 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 399 _citation.page_last 402 _citation.title 'Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nmeth.4178 _citation.pdbx_database_id_PubMed 28192420 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'de la Cruz, M.J.' 1 ? primary 'Hattne, J.' 2 ? primary 'Shi, D.' 3 ? primary 'Seidler, P.' 4 ? primary 'Rodriguez, J.' 5 ? primary 'Reyes, F.E.' 6 ? primary 'Sawaya, M.R.' 7 ? primary 'Cascio, D.' 8 ? primary 'Weiss, S.C.' 9 ? primary 'Kim, S.K.' 10 ? primary 'Hinck, C.S.' 11 ? primary 'Hinck, A.P.' 12 ? primary 'Calero, G.' 13 ? primary 'Eisenberg, D.' 14 ? primary 'Gonen, T.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn VQIVYK 749.917 1 ? ? ? ? 2 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'tau peptide' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VQIVYK _entity_poly.pdbx_seq_one_letter_code_can VQIVYK _entity_poly.pdbx_strand_id Z _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLN n 1 3 ILE n 1 4 VAL n 1 5 TYR n 1 6 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL Z . n A 1 2 GLN 2 2 2 GLN GLN Z . n A 1 3 ILE 3 3 3 ILE ILE Z . n A 1 4 VAL 4 4 4 VAL VAL Z . n A 1 5 TYR 5 5 5 TYR TYR Z . n A 1 6 LYS 6 6 6 LYS LYS Z . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 1 HOH HOH Z . B 2 HOH 2 102 2 HOH HOH Z . # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name BUSTER _software.os ? _software.os_version ? _software.type ? _software.version 2.10.0 _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 111.55 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5K7N _cell.details ? _cell.formula_units_Z ? _cell.length_a 29.420 _cell.length_a_esd ? _cell.length_b 4.990 _cell.length_b_esd ? _cell.length_c 37.170 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5K7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5K7N _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.B_iso_Wilson_estimate 8.35 _reflns.entry_id 5K7N _reflns.d_resolution_high 1.10 _reflns.d_resolution_low 14.70 _reflns.number_all 6185 _reflns.number_obs 3319 _reflns.percent_possible_obs 83.0 _reflns.pdbx_redundancy 1.9 _reflns.pdbx_Rmerge_I_obs 0.126 _reflns.pdbx_Rsym_value 0.126 _reflns.pdbx_netI_over_sigmaI 2.4 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.pdbx_CC_half ? # _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.10 _reflns_shell.d_res_low 1.23 _reflns_shell.number_unique_all 463 _reflns_shell.number_unique_obs 255 _reflns_shell.percent_possible_all 79.4 _reflns_shell.Rmerge_I_obs 0.472 _reflns_shell.pdbx_redundancy 1.8 _reflns_shell.pdbx_Rsym_value 0.472 _reflns_shell.pdbx_netI_over_sigmaI_obs 1.1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_obs ? _reflns_shell.pdbx_CC_half ? # _refine.aniso_B[1][1] 1.6602 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 3.1898 _refine.aniso_B[2][2] 0.0678 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -1.7280 _refine.B_iso_max ? _refine.B_iso_mean 13.51 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.9486 _refine.correlation_coeff_Fo_to_Fc_free 0.9516 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5K7N _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.10 _refine.ls_d_res_low 14.70 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1898 _refine.ls_number_reflns_R_free 190 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 81.11 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2110 _refine.ls_R_factor_R_free 0.2228 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2097 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.045 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.046 _refine.pdbx_overall_SU_R_Blow_DPI 0.046 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.048 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5K7N _refine_analyze.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.203 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.012 ? 111 ? t_bond_d 2.00 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? 0.77 ? 202 ? t_angle_deg 2.00 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 26 ? t_dihedral_angle_d 2.00 SINUSOIDAL 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_incorr_chiral_ct ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_pseud_angle ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 2 ? t_trig_c_planes 2.00 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 12 ? t_gen_planes 5.00 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 111 ? t_it 20.00 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 0 ? t_nbd 5.00 SEMIHARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? 1.62 ? ? ? t_omega_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 9.65 ? ? ? t_other_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_improper_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 7 ? t_chiral_improper_torsion 5.00 SEMIHARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_sum_occupancies ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_utility_distance ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_utility_angle ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_utility_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 68 ? t_ideal_dist_contact 4.00 SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_ls_shell.d_res_high 1.10 _refine_ls_shell.d_res_low 1.23 _refine_ls_shell.number_reflns_all 543 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.number_reflns_R_work 489 _refine_ls_shell.percent_reflns_obs 81.11 _refine_ls_shell.percent_reflns_R_free 9.94 _refine_ls_shell.R_factor_all 0.2117 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2243 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2104 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5K7N _struct.title 'MicroED structure of tau VQIVYK peptide at 1.1 A resolution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5K7N _struct_keywords.text 'Amyloid, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5K7N _struct_ref.pdbx_db_accession 5K7N _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5K7N _struct_ref_seq.pdbx_strand_id Z _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5K7N _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 1 2 A,B 1 3 A,B 1 4 A,B 1 5 A,B 1 6 A,B 1 7 A,B 1 8 A,B 1 9 A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_515 x,y-4,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -19.9600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_525 x,y-3,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -14.9700000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -9.9800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.9900000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.9900000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.9800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 8 'crystal symmetry operation' 1_585 x,y+3,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 14.9700000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9 'crystal symmetry operation' 1_595 x,y+4,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 19.9600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;The biological unit is an extended pair of beta sheets comprising peptides at position X,Y,Z extended ad infinitum along the b crystal axis. ; # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id Z _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 102 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_refine_tls.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 10.8417 _pdbx_refine_tls.origin_y 1.9560 _pdbx_refine_tls.origin_z 8.5763 _pdbx_refine_tls.T[1][1] -0.0041 _pdbx_refine_tls.T[2][2] -0.0667 _pdbx_refine_tls.T[3][3] 0.0721 _pdbx_refine_tls.T[1][2] -0.0004 _pdbx_refine_tls.T[1][3] 0.0615 _pdbx_refine_tls.T[2][3] -0.0046 _pdbx_refine_tls.L[1][1] 0.4341 _pdbx_refine_tls.L[2][2] 0.6654 _pdbx_refine_tls.L[3][3] 0.0381 _pdbx_refine_tls.L[1][2] 0.2835 _pdbx_refine_tls.L[1][3] 0.1240 _pdbx_refine_tls.L[2][3] 0.2447 _pdbx_refine_tls.S[1][1] -0.0138 _pdbx_refine_tls.S[1][2] 0.0028 _pdbx_refine_tls.S[1][3] 0.0020 _pdbx_refine_tls.S[2][1] -0.0426 _pdbx_refine_tls.S[2][2] 0.0046 _pdbx_refine_tls.S[2][3] 0.0052 _pdbx_refine_tls.S[3][1] 0.0280 _pdbx_refine_tls.S[3][2] 0.0029 _pdbx_refine_tls.S[3][3] 0.0092 # _pdbx_refine_tls_group.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details '{ Z|* }' # _em_3d_fitting.entry_id 5K7N _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 5K7N _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution 1.10 _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name VQIVYK _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 5K7N _em_image_scans.id 1 _em_image_scans.dimension_height 2048 _em_image_scans.dimension_width 2048 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 0.0311999992 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? # _em_imaging.id 1 _em_imaging.entry_id 5K7N _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.date 2016-04-26 _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.specimen_holder_type ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.citation_id ? _em_imaging.detector_distance ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 5K7N _em_vitrification.temp ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? # _em_experiment.entry_id 5K7N _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLN N N N N 1 GLN CA C N S 2 GLN C C N N 3 GLN O O N N 4 GLN CB C N N 5 GLN CG C N N 6 GLN CD C N N 7 GLN OE1 O N N 8 GLN NE2 N N N 9 GLN OXT O N N 10 GLN H H N N 11 GLN H2 H N N 12 GLN HA H N N 13 GLN HB2 H N N 14 GLN HB3 H N N 15 GLN HG2 H N N 16 GLN HG3 H N N 17 GLN HE21 H N N 18 GLN HE22 H N N 19 GLN HXT H N N 20 HOH O O N N 21 HOH H1 H N N 22 HOH H2 H N N 23 ILE N N N N 24 ILE CA C N S 25 ILE C C N N 26 ILE O O N N 27 ILE CB C N S 28 ILE CG1 C N N 29 ILE CG2 C N N 30 ILE CD1 C N N 31 ILE OXT O N N 32 ILE H H N N 33 ILE H2 H N N 34 ILE HA H N N 35 ILE HB H N N 36 ILE HG12 H N N 37 ILE HG13 H N N 38 ILE HG21 H N N 39 ILE HG22 H N N 40 ILE HG23 H N N 41 ILE HD11 H N N 42 ILE HD12 H N N 43 ILE HD13 H N N 44 ILE HXT H N N 45 LYS N N N N 46 LYS CA C N S 47 LYS C C N N 48 LYS O O N N 49 LYS CB C N N 50 LYS CG C N N 51 LYS CD C N N 52 LYS CE C N N 53 LYS NZ N N N 54 LYS OXT O N N 55 LYS H H N N 56 LYS H2 H N N 57 LYS HA H N N 58 LYS HB2 H N N 59 LYS HB3 H N N 60 LYS HG2 H N N 61 LYS HG3 H N N 62 LYS HD2 H N N 63 LYS HD3 H N N 64 LYS HE2 H N N 65 LYS HE3 H N N 66 LYS HZ1 H N N 67 LYS HZ2 H N N 68 LYS HZ3 H N N 69 LYS HXT H N N 70 TYR N N N N 71 TYR CA C N S 72 TYR C C N N 73 TYR O O N N 74 TYR CB C N N 75 TYR CG C Y N 76 TYR CD1 C Y N 77 TYR CD2 C Y N 78 TYR CE1 C Y N 79 TYR CE2 C Y N 80 TYR CZ C Y N 81 TYR OH O N N 82 TYR OXT O N N 83 TYR H H N N 84 TYR H2 H N N 85 TYR HA H N N 86 TYR HB2 H N N 87 TYR HB3 H N N 88 TYR HD1 H N N 89 TYR HD2 H N N 90 TYR HE1 H N N 91 TYR HE2 H N N 92 TYR HH H N N 93 TYR HXT H N N 94 VAL N N N N 95 VAL CA C N S 96 VAL C C N N 97 VAL O O N N 98 VAL CB C N N 99 VAL CG1 C N N 100 VAL CG2 C N N 101 VAL OXT O N N 102 VAL H H N N 103 VAL H2 H N N 104 VAL HA H N N 105 VAL HB H N N 106 VAL HG11 H N N 107 VAL HG12 H N N 108 VAL HG13 H N N 109 VAL HG21 H N N 110 VAL HG22 H N N 111 VAL HG23 H N N 112 VAL HXT H N N 113 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN N CA sing N N 1 GLN N H sing N N 2 GLN N H2 sing N N 3 GLN CA C sing N N 4 GLN CA CB sing N N 5 GLN CA HA sing N N 6 GLN C O doub N N 7 GLN C OXT sing N N 8 GLN CB CG sing N N 9 GLN CB HB2 sing N N 10 GLN CB HB3 sing N N 11 GLN CG CD sing N N 12 GLN CG HG2 sing N N 13 GLN CG HG3 sing N N 14 GLN CD OE1 doub N N 15 GLN CD NE2 sing N N 16 GLN NE2 HE21 sing N N 17 GLN NE2 HE22 sing N N 18 GLN OXT HXT sing N N 19 HOH O H1 sing N N 20 HOH O H2 sing N N 21 ILE N CA sing N N 22 ILE N H sing N N 23 ILE N H2 sing N N 24 ILE CA C sing N N 25 ILE CA CB sing N N 26 ILE CA HA sing N N 27 ILE C O doub N N 28 ILE C OXT sing N N 29 ILE CB CG1 sing N N 30 ILE CB CG2 sing N N 31 ILE CB HB sing N N 32 ILE CG1 CD1 sing N N 33 ILE CG1 HG12 sing N N 34 ILE CG1 HG13 sing N N 35 ILE CG2 HG21 sing N N 36 ILE CG2 HG22 sing N N 37 ILE CG2 HG23 sing N N 38 ILE CD1 HD11 sing N N 39 ILE CD1 HD12 sing N N 40 ILE CD1 HD13 sing N N 41 ILE OXT HXT sing N N 42 LYS N CA sing N N 43 LYS N H sing N N 44 LYS N H2 sing N N 45 LYS CA C sing N N 46 LYS CA CB sing N N 47 LYS CA HA sing N N 48 LYS C O doub N N 49 LYS C OXT sing N N 50 LYS CB CG sing N N 51 LYS CB HB2 sing N N 52 LYS CB HB3 sing N N 53 LYS CG CD sing N N 54 LYS CG HG2 sing N N 55 LYS CG HG3 sing N N 56 LYS CD CE sing N N 57 LYS CD HD2 sing N N 58 LYS CD HD3 sing N N 59 LYS CE NZ sing N N 60 LYS CE HE2 sing N N 61 LYS CE HE3 sing N N 62 LYS NZ HZ1 sing N N 63 LYS NZ HZ2 sing N N 64 LYS NZ HZ3 sing N N 65 LYS OXT HXT sing N N 66 TYR N CA sing N N 67 TYR N H sing N N 68 TYR N H2 sing N N 69 TYR CA C sing N N 70 TYR CA CB sing N N 71 TYR CA HA sing N N 72 TYR C O doub N N 73 TYR C OXT sing N N 74 TYR CB CG sing N N 75 TYR CB HB2 sing N N 76 TYR CB HB3 sing N N 77 TYR CG CD1 doub Y N 78 TYR CG CD2 sing Y N 79 TYR CD1 CE1 sing Y N 80 TYR CD1 HD1 sing N N 81 TYR CD2 CE2 doub Y N 82 TYR CD2 HD2 sing N N 83 TYR CE1 CZ doub Y N 84 TYR CE1 HE1 sing N N 85 TYR CE2 CZ sing Y N 86 TYR CE2 HE2 sing N N 87 TYR CZ OH sing N N 88 TYR OH HH sing N N 89 TYR OXT HXT sing N N 90 VAL N CA sing N N 91 VAL N H sing N N 92 VAL N H2 sing N N 93 VAL CA C sing N N 94 VAL CA CB sing N N 95 VAL CA HA sing N N 96 VAL C O doub N N 97 VAL C OXT sing N N 98 VAL CB CG1 sing N N 99 VAL CB CG2 sing N N 100 VAL CB HB sing N N 101 VAL CG1 HG11 sing N N 102 VAL CG1 HG12 sing N N 103 VAL CG1 HG13 sing N N 104 VAL CG2 HG21 sing N N 105 VAL CG2 HG22 sing N N 106 VAL CG2 HG23 sing N N 107 VAL OXT HXT sing N N 108 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 111.55 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 29.42 _em_3d_crystal_entity.length_b 4.99 _em_3d_crystal_entity.length_c 37.17 _em_3d_crystal_entity.space_group_name 'C 1 2 1' _em_3d_crystal_entity.space_group_num 5 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 22.5 % ? 'ethylene glycol' 1 2 ? ? ? Tris # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 730 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 79.4 _em_diffraction_shell.high_resolution 1.10 _em_diffraction_shell.low_resolution 1.23 _em_diffraction_shell.multiplicity 1.8 _em_diffraction_shell.num_structure_factors 255 _em_diffraction_shell.phase_residual 47.6 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 83.0 _em_diffraction_stats.high_resolution 1.10 _em_diffraction_stats.num_intensities_measured 6185 _em_diffraction_stats.num_structure_factors 3319 _em_diffraction_stats.overall_phase_error 0 _em_diffraction_stats.overall_phase_residual 39.4 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 12.9 _em_diffraction_stats.r_sym 12.9 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.000747 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ . _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.002 _em_image_recording.average_exposure_time 2.1 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images 299 _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 299 # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? EM-Menu 4.0.9.75 ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? XDS 'May 1, 2016' ? ? ? 6 'MODEL FITTING' ? ? ? ? 1 ? 7 OTHER phasing SHELXT 2014/5 ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? XDS 'May 1, 2016' 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? BUSTER 2.10.0 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1R01-AG029430 _pdbx_audit_support.ordinal 1 # _pdbx_related_exp_data_set.data_reference 10.15785/SBGRID/284 _pdbx_related_exp_data_set.data_set_type 'diffraction image data' _pdbx_related_exp_data_set.details 'SB Data Grid' _pdbx_related_exp_data_set.metadata_reference ? _pdbx_related_exp_data_set.ordinal 1 # _atom_sites.entry_id 5K7N _atom_sites.fract_transf_matrix[1][1] 0.033990 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.013423 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.200401 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028925 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_