HEADER HYDROLASE 30-MAY-16 5K8K TITLE STRUCTURE OF THE HAEMOPHILUS INFLUENZAE LPXH-LIPID X COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-2,3-DIACYLGLUCOSAMINE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-2,3-DIACYLGLUCOSAMINE DIPHOSPHATASE; COMPND 5 EC: 3.6.1.54; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM SOURCE 3 11121 / KW20 / RD); SOURCE 4 ORGANISM_TAXID: 71421; SOURCE 5 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 6 GENE: LPXH, HI_0735; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LPXH, LIPID X, UDP-DIACYLGLUCOSAMINE, LIPID A, LPS, KEYWDS 2 LIPOPOLYSACCHARIDE, ANTIBIOTIC, CALCINEURIN-LIKE PHOSPHOESTERASE, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.CHO,C.-J.LEE,P.ZHOU REVDAT 5 25-DEC-19 5K8K 1 REMARK REVDAT 4 20-SEP-17 5K8K 1 REMARK REVDAT 3 09-NOV-16 5K8K 1 JRNL REVDAT 2 21-SEP-16 5K8K 1 JRNL REVDAT 1 10-AUG-16 5K8K 0 JRNL AUTH J.CHO,C.J.LEE,J.ZHAO,H.E.YOUNG,P.ZHOU JRNL TITL STRUCTURE OF THE ESSENTIAL HAEMOPHILUS INFLUENZAE JRNL TITL 2 UDP-DIACYLGLUCOSAMINE PYROPHOSPHOHYDROLASE LPXH IN LIPID A JRNL TITL 3 BIOSYNTHESIS. JRNL REF NAT MICROBIOL V. 1 16154 2016 JRNL REFN ESSN 2058-5276 JRNL PMID 27780190 JRNL DOI 10.1038/NMICROBIOL.2016.154 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.4562 - 5.3038 1.00 1386 132 0.2076 0.2015 REMARK 3 2 5.3038 - 4.2098 1.00 1304 139 0.1635 0.2142 REMARK 3 3 4.2098 - 3.6777 1.00 1290 142 0.1768 0.2195 REMARK 3 4 3.6777 - 3.3414 1.00 1293 128 0.1742 0.2084 REMARK 3 5 3.3414 - 3.1019 1.00 1276 146 0.1936 0.2373 REMARK 3 6 3.1019 - 2.9190 1.00 1258 155 0.2058 0.2698 REMARK 3 7 2.9190 - 2.7728 1.00 1271 134 0.2204 0.2444 REMARK 3 8 2.7728 - 2.6521 1.00 1279 152 0.2283 0.2935 REMARK 3 9 2.6521 - 2.5500 1.00 1237 150 0.2711 0.2985 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2031 REMARK 3 ANGLE : 0.617 2732 REMARK 3 CHIRALITY : 0.042 301 REMARK 3 PLANARITY : 0.004 346 REMARK 3 DIHEDRAL : 11.123 1196 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3584 33.5248 18.3413 REMARK 3 T TENSOR REMARK 3 T11: 0.4562 T22: 0.4218 REMARK 3 T33: 0.3587 T12: 0.1552 REMARK 3 T13: 0.0033 T23: -0.0634 REMARK 3 L TENSOR REMARK 3 L11: 2.1862 L22: 2.2918 REMARK 3 L33: 3.9126 L12: -0.5462 REMARK 3 L13: 0.7750 L23: -0.4168 REMARK 3 S TENSOR REMARK 3 S11: -0.3205 S12: -0.4972 S13: 0.2514 REMARK 3 S21: 0.6726 S22: 0.2604 S23: -0.1405 REMARK 3 S31: -0.0482 S32: 0.2000 S33: 0.0501 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4329 14.5493 14.5872 REMARK 3 T TENSOR REMARK 3 T11: 0.8510 T22: 0.5736 REMARK 3 T33: 0.5815 T12: 0.3945 REMARK 3 T13: 0.0225 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.4047 L22: 0.9692 REMARK 3 L33: 2.5894 L12: -0.4487 REMARK 3 L13: -0.1668 L23: -0.3061 REMARK 3 S TENSOR REMARK 3 S11: -0.1445 S12: -0.0801 S13: -0.3623 REMARK 3 S21: 0.1190 S22: 0.2699 S23: -0.1868 REMARK 3 S31: 1.2075 S32: 0.6808 S33: -0.0887 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7889 28.7967 -2.4740 REMARK 3 T TENSOR REMARK 3 T11: 0.3827 T22: 0.6435 REMARK 3 T33: 0.4916 T12: 0.1500 REMARK 3 T13: 0.1045 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 4.1649 L22: 2.5840 REMARK 3 L33: 0.3074 L12: -2.1575 REMARK 3 L13: -0.3415 L23: 0.1253 REMARK 3 S TENSOR REMARK 3 S11: -0.0906 S12: 0.6040 S13: 0.3641 REMARK 3 S21: -0.2277 S22: -0.0087 S23: -0.8881 REMARK 3 S31: 0.3178 S32: 0.9050 S33: 0.0595 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3236 38.2346 4.2064 REMARK 3 T TENSOR REMARK 3 T11: 0.2849 T22: 0.4365 REMARK 3 T33: 0.5592 T12: -0.0545 REMARK 3 T13: 0.0522 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.2400 L22: 2.0669 REMARK 3 L33: 2.1370 L12: 0.9691 REMARK 3 L13: -0.6597 L23: 1.3482 REMARK 3 S TENSOR REMARK 3 S11: -0.1384 S12: 0.3429 S13: 0.2974 REMARK 3 S21: -0.1241 S22: 0.1254 S23: -0.5715 REMARK 3 S31: -0.3344 S32: 0.8682 S33: -0.0487 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9025 46.9581 12.0585 REMARK 3 T TENSOR REMARK 3 T11: 0.6185 T22: 0.4363 REMARK 3 T33: 0.6960 T12: -0.0212 REMARK 3 T13: -0.0592 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 0.3138 L22: 2.3987 REMARK 3 L33: 1.6515 L12: -0.4225 REMARK 3 L13: -0.5274 L23: -0.3560 REMARK 3 S TENSOR REMARK 3 S11: -0.1114 S12: 0.0543 S13: 0.3835 REMARK 3 S21: -0.0448 S22: 0.1502 S23: 0.0432 REMARK 3 S31: -0.6887 S32: 0.3765 S33: -0.0239 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K8K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27, XSCALE VERSION REMARK 200 OCT 15, 2015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 79.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.10.1-2155 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NACL, 10 MM HEPES, 35 MM SODIUM REMARK 280 ACETATE PH 4.1, 2.2% PEG 4000, 0.3 MM SULFONYL PIPERAZINE, 0.7% REMARK 280 DMSO, 22% GLYCEROL, AND ~3-4 MM N-DECYL-BETA-D- REMARK 280 THIOMALTOPYRANOSIDE., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 49.92000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.82133 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 66.95000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 49.92000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.82133 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 66.95000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 49.92000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.82133 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.95000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 49.92000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.82133 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.95000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 49.92000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.82133 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 66.95000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 49.92000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.82133 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 66.95000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.64265 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 133.90000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 57.64265 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 133.90000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 57.64265 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 133.90000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 57.64265 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 133.90000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 57.64265 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 133.90000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 57.64265 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 133.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 238 REMARK 465 GLU A 239 REMARK 465 GLU A 240 REMARK 465 ASN A 241 REMARK 465 LEU A 242 REMARK 465 TYR A 243 REMARK 465 PHE A 244 REMARK 465 GLN A 245 REMARK 465 SER A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 16 OE1 NE2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 ASP A 25 CG OD1 OD2 REMARK 470 GLN A 53 OE1 NE2 REMARK 470 PHE A 66 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 LYS A 91 CD CE NZ REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 GLN A 128 CG CD OE1 NE2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLU A 155 CD OE1 OE2 REMARK 470 GLN A 163 CD OE1 NE2 REMARK 470 GLN A 166 OE1 NE2 REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 204 CD OE1 NE2 REMARK 470 GLN A 205 CD OE1 NE2 REMARK 470 GLU A 206 CG CD OE1 OE2 REMARK 470 GLU A 207 CD OE1 OE2 REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 GLU A 231 CD OE1 OE2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 ASP A 237 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 40 55.80 -98.31 REMARK 500 HIS A 196 -45.24 72.33 REMARK 500 HIS A 198 -24.25 72.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD1 REMARK 620 2 HIS A 11 NE2 93.4 REMARK 620 3 ASP A 42 OD2 82.0 107.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 OD2 REMARK 620 2 ASN A 80 OD1 96.8 REMARK 620 3 HIS A 115 NE2 85.8 80.9 REMARK 620 4 HIS A 196 ND1 175.1 83.9 99.2 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED DBREF 5K8K A 2 237 UNP P44046 LPXH_HAEIN 2 237 SEQADV 5K8K MSE A 1 UNP P44046 INITIATING METHIONINE SEQADV 5K8K LEU A 238 UNP P44046 EXPRESSION TAG SEQADV 5K8K GLU A 239 UNP P44046 EXPRESSION TAG SEQADV 5K8K GLU A 240 UNP P44046 EXPRESSION TAG SEQADV 5K8K ASN A 241 UNP P44046 EXPRESSION TAG SEQADV 5K8K LEU A 242 UNP P44046 EXPRESSION TAG SEQADV 5K8K TYR A 243 UNP P44046 EXPRESSION TAG SEQADV 5K8K PHE A 244 UNP P44046 EXPRESSION TAG SEQADV 5K8K GLN A 245 UNP P44046 EXPRESSION TAG SEQADV 5K8K SER A 246 UNP P44046 EXPRESSION TAG SEQADV 5K8K HIS A 247 UNP P44046 EXPRESSION TAG SEQADV 5K8K HIS A 248 UNP P44046 EXPRESSION TAG SEQADV 5K8K HIS A 249 UNP P44046 EXPRESSION TAG SEQADV 5K8K HIS A 250 UNP P44046 EXPRESSION TAG SEQADV 5K8K HIS A 251 UNP P44046 EXPRESSION TAG SEQADV 5K8K HIS A 252 UNP P44046 EXPRESSION TAG SEQADV 5K8K HIS A 253 UNP P44046 EXPRESSION TAG SEQADV 5K8K HIS A 254 UNP P44046 EXPRESSION TAG SEQADV 5K8K HIS A 255 UNP P44046 EXPRESSION TAG SEQADV 5K8K HIS A 256 UNP P44046 EXPRESSION TAG SEQRES 1 A 256 MSE LYS HIS SER TYR PHE ILE SER ASP LEU HIS LEU SER SEQRES 2 A 256 GLU THR GLN PRO GLU LEU THR ALA LEU PHE VAL ASP PHE SEQRES 3 A 256 MSE GLN ASN LEU ALA PRO GLN ALA GLU ARG LEU TYR ILE SEQRES 4 A 256 LEU GLY ASP LEU PHE ASP PHE TRP ILE GLY ASP ASP GLU SEQRES 5 A 256 GLN SER ALA LEU ILE GLN GLN VAL LYS ASP LEU ILE LYS SEQRES 6 A 256 PHE VAL SER ASP GLN GLY VAL GLN CYS TYR PHE GLN HIS SEQRES 7 A 256 GLY ASN ARG ASP PHE LEU ILE GLY GLU ARG PHE SER LYS SEQRES 8 A 256 GLU THR GLY ALA GLN LEU LEU PRO ASP TYR GLN LEU ILE SEQRES 9 A 256 THR LEU TYR ASP LYS LYS ILE LEU LEU CYS HIS GLY ASP SEQRES 10 A 256 THR LEU CYS ILE ASP ASP GLU ALA TYR GLN GLN PHE ARG SEQRES 11 A 256 ARG ARG VAL HIS GLN LYS TRP LEU GLN ARG LEU PHE LEU SEQRES 12 A 256 CYS LEU PRO LEU LYS VAL ARG VAL ILE ILE ALA GLU LYS SEQRES 13 A 256 ILE ARG ALA LYS SER ASN GLN ASP LYS GLN ALA LYS SER SEQRES 14 A 256 GLN GLU ILE MSE ASP VAL ASN GLN ALA PHE THR ALA GLU SEQRES 15 A 256 LYS VAL GLN GLU PHE GLY VAL ASN LEU LEU ILE HIS GLY SEQRES 16 A 256 HIS THR HIS ARG GLU ALA ILE HIS GLN GLN GLU GLU PHE SEQRES 17 A 256 THR ARG ILE VAL LEU GLY ASP TRP ARG LYS ASN TYR ALA SEQRES 18 A 256 SER ILE LEU LYS MSE ASP GLU SER GLY GLU PHE GLY PHE SEQRES 19 A 256 ILE LYS ASP LEU GLU GLU ASN LEU TYR PHE GLN SER HIS SEQRES 20 A 256 HIS HIS HIS HIS HIS HIS HIS HIS HIS MODRES 5K8K MSE A 27 MET MODIFIED RESIDUE MODRES 5K8K MSE A 173 MET MODIFIED RESIDUE MODRES 5K8K MSE A 226 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 27 8 HET MSE A 173 8 HET MSE A 226 16 HET MN A 301 1 HET MN A 302 1 HET LP5 A 303 48 HET ACT A 304 4 HET ACT A 305 4 HET GOL A 306 6 HET GOL A 307 6 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM LP5 (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5- HETNAM 2 LP5 ((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY) HETNAM 3 LP5 TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 MN 2(MN 2+) FORMUL 4 LP5 C34 H66 N O12 P FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *19(H2 O) HELIX 1 AA1 GLN A 16 LEU A 30 1 15 HELIX 2 AA2 ALA A 31 ALA A 34 5 4 HELIX 3 AA3 SER A 54 GLN A 70 1 17 HELIX 4 AA4 GLY A 86 GLY A 94 1 9 HELIX 5 AA5 GLY A 116 CYS A 120 5 5 HELIX 6 AA6 GLU A 124 HIS A 134 1 11 HELIX 7 AA7 TRP A 137 CYS A 144 1 8 HELIX 8 AA8 LEU A 147 ALA A 167 1 21 HELIX 9 AA9 GLN A 170 ASP A 174 5 5 HELIX 10 AB1 ASN A 176 GLY A 188 1 13 SHEET 1 AA1 6 GLN A 96 LEU A 98 0 SHEET 2 AA1 6 GLN A 73 GLN A 77 1 N PHE A 76 O GLN A 96 SHEET 3 AA1 6 ARG A 36 LEU A 40 1 N ILE A 39 O GLN A 77 SHEET 4 AA1 6 HIS A 3 ILE A 7 1 N ILE A 7 O LEU A 40 SHEET 5 AA1 6 LEU A 224 ASP A 227 -1 O MSE A 226 N SER A 4 SHEET 6 AA1 6 PHE A 232 PHE A 234 -1 O GLY A 233 N LYS A 225 SHEET 1 AA2 5 TYR A 101 LEU A 106 0 SHEET 2 AA2 5 LYS A 109 CYS A 114 -1 O ILE A 111 N ILE A 104 SHEET 3 AA2 5 LEU A 191 HIS A 194 1 O ILE A 193 N LEU A 112 SHEET 4 AA2 5 THR A 209 VAL A 212 1 O ILE A 211 N LEU A 192 SHEET 5 AA2 5 ALA A 201 GLN A 204 -1 N ALA A 201 O VAL A 212 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK OD1 ASP A 9 MN MN A 302 1555 1555 2.17 LINK NE2 HIS A 11 MN MN A 302 1555 1555 2.32 LINK C PHE A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N GLN A 28 1555 1555 1.33 LINK OD2 ASP A 42 MN MN A 301 1555 1555 2.14 LINK OD2 ASP A 42 MN MN A 302 1555 1555 2.34 LINK OD1 ASN A 80 MN MN A 301 1555 1555 2.00 LINK NE2 HIS A 115 MN MN A 301 1555 1555 2.31 LINK C ILE A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N ASP A 174 1555 1555 1.33 LINK ND1 HIS A 196 MN MN A 301 1555 1555 2.09 LINK C LYS A 225 N AMSE A 226 1555 1555 1.33 LINK C LYS A 225 N BMSE A 226 1555 1555 1.33 LINK C AMSE A 226 N ASP A 227 1555 1555 1.33 LINK C BMSE A 226 N ASP A 227 1555 1555 1.33 CRYST1 99.840 99.840 200.850 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010016 0.005783 0.000000 0.00000 SCALE2 0.000000 0.011566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004979 0.00000 HETATM 1 N MSE A 1 -15.057 55.617 16.964 1.00 92.19 N ANISOU 1 N MSE A 1 14264 8426 12338 2190 -1464 -2172 N HETATM 2 CA MSE A 1 -14.512 54.902 15.816 1.00 87.99 C ANISOU 2 CA MSE A 1 13548 7910 11974 1938 -1460 -1995 C HETATM 3 C MSE A 1 -14.577 53.395 16.032 1.00 84.57 C ANISOU 3 C MSE A 1 12883 7806 11443 1996 -1275 -1965 C HETATM 4 O MSE A 1 -13.679 52.806 16.640 1.00 84.41 O ANISOU 4 O MSE A 1 12854 7866 11350 1890 -1337 -2049 O HETATM 5 CB MSE A 1 -13.069 55.336 15.550 1.00 92.68 C ANISOU 5 CB MSE A 1 14237 8275 12702 1566 -1714 -1996 C HETATM 6 CG MSE A 1 -12.411 54.669 14.344 1.00 99.71 C ANISOU 6 CG MSE A 1 14926 9188 13772 1271 -1717 -1797 C HETATM 7 SE MSE A 1 -13.136 55.210 12.607 1.00102.39 SE ANISOU 7 SE MSE A 1 15216 9369 14319 1215 -1669 -1530 SE HETATM 8 CE MSE A 1 -11.463 55.664 11.713 1.00103.67 C ANISOU 8 CE MSE A 1 15352 9359 14678 653 -1880 -1363 C