HEADER TRANSFERASE 31-MAY-16 5K8S TITLE CAMP BOUND PFPKA-R (297-441) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE REGULATORY SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 297-441; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PKAR, PFL1110C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28 KEYWDS PLASMODIUM FALCIPARUM, PKA, PROTEIN KINASE A, CAMP, CBD, CYCLIC KEYWDS 2 NUCLEOTIDE BINDING, CNB, REGULATORY DOMAIN, R, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.R.LITTLER,P.R.GILSON,B.S.CRABB,J.J.ROSSJOHN REVDAT 5 27-SEP-23 5K8S 1 REMARK REVDAT 4 26-FEB-20 5K8S 1 REMARK REVDAT 3 14-DEC-16 5K8S 1 JRNL REVDAT 2 26-OCT-16 5K8S 1 JRNL REVDAT 1 12-OCT-16 5K8S 0 JRNL AUTH D.R.LITTLER,H.E.BULLEN,K.L.HARVEY,T.BEDDOE,B.S.CRABB, JRNL AUTH 2 J.ROSSJOHN,P.R.GILSON JRNL TITL DISRUPTING THE ALLOSTERIC INTERACTION BETWEEN THE PLASMODIUM JRNL TITL 2 FALCIPARUM CAMP-DEPENDENT KINASE AND ITS REGULATORY SUBUNIT. JRNL REF J. BIOL. CHEM. V. 291 25375 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27738107 JRNL DOI 10.1074/JBC.M116.750174 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 104241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 5163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0416 - 3.5720 0.69 2528 122 0.1980 0.2453 REMARK 3 2 3.5720 - 2.8356 0.96 3405 174 0.1779 0.1929 REMARK 3 3 2.8356 - 2.4773 0.99 3419 203 0.1853 0.2140 REMARK 3 4 2.4773 - 2.2509 0.99 3446 177 0.1848 0.2002 REMARK 3 5 2.2509 - 2.0896 0.99 3391 182 0.1853 0.1892 REMARK 3 6 2.0896 - 1.9664 0.99 3428 163 0.1732 0.1717 REMARK 3 7 1.9664 - 1.8679 0.99 3393 148 0.2146 0.2653 REMARK 3 8 1.8679 - 1.7866 1.00 3409 187 0.1848 0.2162 REMARK 3 9 1.7866 - 1.7178 1.00 3409 177 0.1887 0.2034 REMARK 3 10 1.7178 - 1.6585 1.00 3420 165 0.1877 0.2228 REMARK 3 11 1.6585 - 1.6067 1.00 3407 177 0.1830 0.2140 REMARK 3 12 1.6067 - 1.5608 1.00 3355 205 0.1809 0.1865 REMARK 3 13 1.5608 - 1.5197 1.00 3396 179 0.1888 0.2149 REMARK 3 14 1.5197 - 1.4826 1.00 3445 157 0.1876 0.1895 REMARK 3 15 1.4826 - 1.4489 1.00 3379 164 0.2070 0.2361 REMARK 3 16 1.4489 - 1.4181 1.00 3382 172 0.1991 0.2104 REMARK 3 17 1.4181 - 1.3897 1.00 3420 170 0.1950 0.2107 REMARK 3 18 1.3897 - 1.3635 1.00 3362 175 0.2012 0.2398 REMARK 3 19 1.3635 - 1.3391 1.00 3369 202 0.2026 0.2174 REMARK 3 20 1.3391 - 1.3164 1.00 3373 169 0.2086 0.2259 REMARK 3 21 1.3164 - 1.2952 0.99 3367 189 0.3112 0.3316 REMARK 3 22 1.2952 - 1.2753 1.00 3313 181 0.2562 0.2622 REMARK 3 23 1.2753 - 1.2565 1.00 3398 176 0.2305 0.2499 REMARK 3 24 1.2565 - 1.2388 1.00 3345 163 0.2326 0.2586 REMARK 3 25 1.2388 - 1.2221 0.99 3325 178 0.2969 0.3187 REMARK 3 26 1.2221 - 1.2062 0.99 3389 184 0.3109 0.3448 REMARK 3 27 1.2062 - 1.1911 0.95 3173 172 0.2717 0.2523 REMARK 3 28 1.1911 - 1.1768 0.90 3079 155 0.2750 0.2771 REMARK 3 29 1.1768 - 1.1631 0.86 2894 159 0.2813 0.2860 REMARK 3 30 1.1631 - 1.1500 0.79 2659 138 0.2904 0.3322 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2578 REMARK 3 ANGLE : 1.311 3508 REMARK 3 CHIRALITY : 0.052 395 REMARK 3 PLANARITY : 0.006 446 REMARK 3 DIHEDRAL : 15.126 1042 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7250 -7.5200 -14.2897 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.2212 REMARK 3 T33: 0.1666 T12: 0.0144 REMARK 3 T13: 0.0492 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 5.1677 L22: 4.6489 REMARK 3 L33: 5.0518 L12: -0.5857 REMARK 3 L13: 2.0839 L23: 0.5132 REMARK 3 S TENSOR REMARK 3 S11: 0.1381 S12: -0.1728 S13: -0.0404 REMARK 3 S21: 0.0181 S22: -0.0196 S23: 0.3798 REMARK 3 S31: -0.0945 S32: -0.5328 S33: -0.1457 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2960 -13.1226 -22.1460 REMARK 3 T TENSOR REMARK 3 T11: 0.1021 T22: 0.1312 REMARK 3 T33: 0.0912 T12: -0.0054 REMARK 3 T13: 0.0469 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 1.0538 L22: 2.3218 REMARK 3 L33: 1.3942 L12: -0.1324 REMARK 3 L13: 0.5840 L23: 0.9053 REMARK 3 S TENSOR REMARK 3 S11: 0.1021 S12: -0.0354 S13: 0.1187 REMARK 3 S21: -0.2629 S22: -0.1075 S23: -0.1260 REMARK 3 S31: -0.1219 S32: -0.0349 S33: 0.0009 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 348 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6847 -24.6775 -16.2019 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.1010 REMARK 3 T33: 0.0659 T12: -0.0084 REMARK 3 T13: -0.0036 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.9756 L22: 3.8239 REMARK 3 L33: 2.0948 L12: -0.5449 REMARK 3 L13: 0.7967 L23: -1.0884 REMARK 3 S TENSOR REMARK 3 S11: 0.1254 S12: -0.0747 S13: -0.0758 REMARK 3 S21: 0.0556 S22: -0.1372 S23: -0.2097 REMARK 3 S31: 0.0108 S32: 0.0621 S33: -0.0069 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 370 THROUGH 388 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5430 -16.5676 -16.3903 REMARK 3 T TENSOR REMARK 3 T11: 0.1082 T22: 0.0826 REMARK 3 T33: 0.0981 T12: -0.0131 REMARK 3 T13: -0.0066 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 3.3960 L22: 3.9105 REMARK 3 L33: 3.6575 L12: 0.0321 REMARK 3 L13: -1.0382 L23: 0.2540 REMARK 3 S TENSOR REMARK 3 S11: 0.1591 S12: -0.0734 S13: 0.1986 REMARK 3 S21: 0.0743 S22: -0.1017 S23: -0.3154 REMARK 3 S31: -0.2137 S32: 0.1280 S33: -0.0355 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 389 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6223 -14.8069 -21.4574 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.1372 REMARK 3 T33: 0.0829 T12: 0.0070 REMARK 3 T13: 0.0369 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.1522 L22: 3.9569 REMARK 3 L33: 1.0632 L12: 0.2543 REMARK 3 L13: 0.6398 L23: 0.9456 REMARK 3 S TENSOR REMARK 3 S11: 0.0533 S12: 0.0271 S13: 0.0704 REMARK 3 S21: -0.1972 S22: -0.0193 S23: -0.1575 REMARK 3 S31: -0.1398 S32: 0.0322 S33: -0.0270 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 411 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2011 -15.2249 -6.5534 REMARK 3 T TENSOR REMARK 3 T11: 0.1908 T22: 0.1549 REMARK 3 T33: 0.1347 T12: -0.0344 REMARK 3 T13: -0.0431 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 5.4469 L22: 3.6912 REMARK 3 L33: 1.2110 L12: -4.4898 REMARK 3 L13: 1.5105 L23: -1.2337 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: -0.3139 S13: 0.0102 REMARK 3 S21: 0.4207 S22: 0.0157 S23: -0.3119 REMARK 3 S31: -0.1355 S32: -0.0938 S33: 0.0228 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4098 -22.9828 -10.5111 REMARK 3 T TENSOR REMARK 3 T11: 0.1549 T22: 0.2102 REMARK 3 T33: 0.3041 T12: -0.0626 REMARK 3 T13: -0.1079 T23: 0.0823 REMARK 3 L TENSOR REMARK 3 L11: 5.5602 L22: 7.0864 REMARK 3 L33: 4.9585 L12: -0.8497 REMARK 3 L13: -2.8855 L23: -2.7890 REMARK 3 S TENSOR REMARK 3 S11: 0.1446 S12: -0.1810 S13: -0.0848 REMARK 3 S21: -0.0500 S22: -0.2651 S23: -1.4030 REMARK 3 S31: -0.2968 S32: 0.3462 S33: 0.1842 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 294 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5383 -42.6401 16.0802 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.1881 REMARK 3 T33: 0.0863 T12: 0.0004 REMARK 3 T13: -0.0119 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 5.2663 L22: 2.2441 REMARK 3 L33: 5.5891 L12: -1.6881 REMARK 3 L13: 1.5079 L23: -2.3948 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: 0.0369 S13: 0.2527 REMARK 3 S21: -0.0229 S22: -0.1749 S23: -0.0741 REMARK 3 S31: 0.1267 S32: 0.6697 S33: 0.1933 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 310 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2356 -35.4548 12.3778 REMARK 3 T TENSOR REMARK 3 T11: 0.2836 T22: 0.1950 REMARK 3 T33: 0.2602 T12: 0.0585 REMARK 3 T13: -0.0261 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 9.5769 L22: 6.2033 REMARK 3 L33: 9.3060 L12: 3.2244 REMARK 3 L13: -6.7209 L23: -3.5785 REMARK 3 S TENSOR REMARK 3 S11: -0.3714 S12: -0.1301 S13: 0.4118 REMARK 3 S21: 0.6166 S22: 0.5068 S23: 0.4847 REMARK 3 S31: -0.2450 S32: -0.3240 S33: -0.1336 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 318 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5807 -45.7533 12.2540 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1001 REMARK 3 T33: 0.1071 T12: -0.0033 REMARK 3 T13: -0.0153 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 4.6805 L22: 1.2435 REMARK 3 L33: 8.0796 L12: -0.6325 REMARK 3 L13: -4.7486 L23: 0.0618 REMARK 3 S TENSOR REMARK 3 S11: -0.0561 S12: -0.0604 S13: 0.0995 REMARK 3 S21: 0.1260 S22: 0.0204 S23: -0.0061 REMARK 3 S31: 0.0791 S32: -0.0879 S33: 0.0632 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 334 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6055 -47.7364 -8.3025 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.0837 REMARK 3 T33: 0.1283 T12: 0.0020 REMARK 3 T13: 0.0166 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 4.8287 L22: 2.6019 REMARK 3 L33: 3.9163 L12: 0.7356 REMARK 3 L13: 1.1912 L23: 0.3331 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: 0.2555 S13: -0.3189 REMARK 3 S21: -0.0459 S22: -0.1208 S23: -0.1737 REMARK 3 S31: 0.2892 S32: 0.0806 S33: 0.1549 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 348 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6055 -38.8085 -6.2772 REMARK 3 T TENSOR REMARK 3 T11: 0.1046 T22: 0.0758 REMARK 3 T33: 0.1002 T12: 0.0013 REMARK 3 T13: -0.0243 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.0267 L22: 1.8671 REMARK 3 L33: 3.9675 L12: 0.0424 REMARK 3 L13: 0.5501 L23: -1.7317 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: 0.1037 S13: -0.0166 REMARK 3 S21: -0.0451 S22: 0.0057 S23: -0.0338 REMARK 3 S31: -0.0233 S32: 0.0710 S33: 0.0467 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 370 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6244 -37.5323 0.3359 REMARK 3 T TENSOR REMARK 3 T11: 0.1339 T22: 0.0925 REMARK 3 T33: 0.1029 T12: 0.0168 REMARK 3 T13: -0.0284 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 9.6143 L22: 3.6724 REMARK 3 L33: 2.7043 L12: 5.8362 REMARK 3 L13: -1.1501 L23: -0.4777 REMARK 3 S TENSOR REMARK 3 S11: -0.0532 S12: -0.1217 S13: 0.5302 REMARK 3 S21: 0.1148 S22: -0.0167 S23: 0.3694 REMARK 3 S31: -0.1952 S32: -0.0331 S33: 0.0253 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 378 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6047 -44.5128 -6.2923 REMARK 3 T TENSOR REMARK 3 T11: 0.0933 T22: 0.0502 REMARK 3 T33: 0.0891 T12: 0.0024 REMARK 3 T13: -0.0042 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 5.6571 L22: 1.6422 REMARK 3 L33: 2.1515 L12: 1.4751 REMARK 3 L13: 0.5637 L23: -0.4333 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: 0.1454 S13: -0.0587 REMARK 3 S21: -0.0281 S22: 0.0347 S23: 0.0074 REMARK 3 S31: 0.0324 S32: -0.0414 S33: 0.0480 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 396 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3993 -48.3293 6.4619 REMARK 3 T TENSOR REMARK 3 T11: 0.1392 T22: 0.0969 REMARK 3 T33: 0.1154 T12: 0.0066 REMARK 3 T13: -0.0198 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 4.7761 L22: 1.2121 REMARK 3 L33: 2.8281 L12: 0.5341 REMARK 3 L13: -1.7519 L23: -0.4791 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: -0.1195 S13: -0.2568 REMARK 3 S21: -0.0389 S22: 0.0099 S23: 0.0989 REMARK 3 S31: 0.2248 S32: -0.1017 S33: 0.0985 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 411 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3853 -36.1823 -3.2174 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.1171 REMARK 3 T33: 0.1402 T12: 0.0190 REMARK 3 T13: -0.0130 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 2.1938 L22: 1.2496 REMARK 3 L33: 8.4927 L12: 0.3738 REMARK 3 L13: -1.3104 L23: -0.8554 REMARK 3 S TENSOR REMARK 3 S11: -0.1808 S12: -0.0265 S13: 0.1346 REMARK 3 S21: 0.0820 S22: -0.0160 S23: 0.0986 REMARK 3 S31: -0.1956 S32: -0.4364 S33: 0.1423 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 431 THROUGH 441 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4466 -42.9726 -12.8427 REMARK 3 T TENSOR REMARK 3 T11: 0.1654 T22: 0.1872 REMARK 3 T33: 0.1991 T12: -0.0556 REMARK 3 T13: -0.0113 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 8.5159 L22: 8.7130 REMARK 3 L33: 7.2408 L12: 6.7228 REMARK 3 L13: -4.9663 L23: -5.7235 REMARK 3 S TENSOR REMARK 3 S11: -0.4215 S12: 0.3242 S13: -0.1555 REMARK 3 S21: -0.3094 S22: 0.4434 S23: 0.2459 REMARK 3 S31: 0.6455 S32: -0.6399 S33: -0.1149 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K8S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104403 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 42.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1RGS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% W/V POLYETHYLENE GLYCOL 6000, 0.1M REMARK 280 LICL AND 0.1M CH3COONA PH 4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.64000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.23500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.91000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.23500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.64000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.91000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 440 REMARK 465 ASN A 441 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 301 O HOH A 601 1.87 REMARK 500 OD1 ASN B 420 O HOH B 601 2.09 REMARK 500 OD1 ASN A 356 O HOH A 602 2.10 REMARK 500 O HOH B 720 O HOH B 740 2.15 REMARK 500 OD1 ASP B 402 O HOH B 602 2.17 REMARK 500 OE1 GLU B 430 O HOH B 603 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 301 OD1 ASP B 305 4445 1.96 REMARK 500 O HOH B 602 O HOH B 677 4535 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 362 46.25 39.53 REMARK 500 ASN A 394 -168.01 -169.12 REMARK 500 ASP B 347 32.30 -146.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 789 DISTANCE = 6.40 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMP B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KBF RELATED DB: PDB DBREF 5K8S A 297 441 UNP Q7KQK0 Q7KQK0_PLAF7 297 441 DBREF 5K8S B 297 441 UNP Q7KQK0 Q7KQK0_PLAF7 297 441 SEQADV 5K8S GLY A 294 UNP Q7KQK0 EXPRESSION TAG SEQADV 5K8S PRO A 295 UNP Q7KQK0 EXPRESSION TAG SEQADV 5K8S GLY A 296 UNP Q7KQK0 EXPRESSION TAG SEQADV 5K8S GLY B 294 UNP Q7KQK0 EXPRESSION TAG SEQADV 5K8S PRO B 295 UNP Q7KQK0 EXPRESSION TAG SEQADV 5K8S GLY B 296 UNP Q7KQK0 EXPRESSION TAG SEQRES 1 A 148 GLY PRO GLY ALA LYS LYS ARG LYS MET TYR GLU ASP ILE SEQRES 2 A 148 LEU SER HIS VAL ASN ILE LEU LYS ASP MET ASP PRO TYR SEQRES 3 A 148 GLU ARG CYS LYS VAL ALA ASP CYS LEU LYS SER LYS SER SEQRES 4 A 148 TYR ASN ASP GLY GLU ILE ILE ILE LYS GLU GLY GLU GLU SEQRES 5 A 148 GLY ASP THR PHE PHE ILE LEU ILE ASP GLY ASN ALA VAL SEQRES 6 A 148 ALA SER LYS ASP ASN LYS VAL ILE LYS THR TYR THR LYS SEQRES 7 A 148 GLY ASP TYR PHE GLY GLU LEU ALA LEU LEU LYS ASN LYS SEQRES 8 A 148 PRO ARG ALA ALA THR ILE LYS ALA GLN ASN PHE CYS GLN SEQRES 9 A 148 VAL VAL TYR LEU ASP ARG LYS SER PHE LYS ARG LEU LEU SEQRES 10 A 148 GLY PRO ILE GLU ASP ILE LEU HIS ARG ASN VAL GLU ASN SEQRES 11 A 148 TYR LYS LYS VAL LEU ASN GLU LEU GLY LEU ASP THR THR SEQRES 12 A 148 CYS ILE ASP GLU ASN SEQRES 1 B 148 GLY PRO GLY ALA LYS LYS ARG LYS MET TYR GLU ASP ILE SEQRES 2 B 148 LEU SER HIS VAL ASN ILE LEU LYS ASP MET ASP PRO TYR SEQRES 3 B 148 GLU ARG CYS LYS VAL ALA ASP CYS LEU LYS SER LYS SER SEQRES 4 B 148 TYR ASN ASP GLY GLU ILE ILE ILE LYS GLU GLY GLU GLU SEQRES 5 B 148 GLY ASP THR PHE PHE ILE LEU ILE ASP GLY ASN ALA VAL SEQRES 6 B 148 ALA SER LYS ASP ASN LYS VAL ILE LYS THR TYR THR LYS SEQRES 7 B 148 GLY ASP TYR PHE GLY GLU LEU ALA LEU LEU LYS ASN LYS SEQRES 8 B 148 PRO ARG ALA ALA THR ILE LYS ALA GLN ASN PHE CYS GLN SEQRES 9 B 148 VAL VAL TYR LEU ASP ARG LYS SER PHE LYS ARG LEU LEU SEQRES 10 B 148 GLY PRO ILE GLU ASP ILE LEU HIS ARG ASN VAL GLU ASN SEQRES 11 B 148 TYR LYS LYS VAL LEU ASN GLU LEU GLY LEU ASP THR THR SEQRES 12 B 148 CYS ILE ASP GLU ASN HET CMP A 501 22 HET CMP B 501 22 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETSYN CMP CYCLIC AMP; CAMP FORMUL 3 CMP 2(C10 H12 N5 O6 P) FORMUL 5 HOH *355(H2 O) HELIX 1 AA1 GLY A 296 SER A 308 1 13 HELIX 2 AA2 HIS A 309 LYS A 314 5 6 HELIX 3 AA3 ASP A 317 ASP A 326 1 10 HELIX 4 AA4 GLU A 377 ASN A 383 1 7 HELIX 5 AA5 ARG A 403 LEU A 410 1 8 HELIX 6 AA6 ILE A 413 TYR A 424 1 12 HELIX 7 AA7 TYR A 424 LEU A 431 1 8 HELIX 8 AA8 GLY B 296 SER B 308 1 13 HELIX 9 AA9 ASP B 317 ASP B 326 1 10 HELIX 10 AB1 GLU B 377 ASN B 383 1 7 HELIX 11 AB2 ARG B 403 LEU B 410 1 8 HELIX 12 AB3 ILE B 413 LEU B 431 1 19 HELIX 13 AB4 THR B 435 ASP B 439 5 5 SHEET 1 AA1 4 LYS A 329 TYR A 333 0 SHEET 2 AA1 4 CYS A 396 ASP A 402 -1 O VAL A 398 N LYS A 331 SHEET 3 AA1 4 THR A 348 ASP A 354 -1 N PHE A 349 O LEU A 401 SHEET 4 AA1 4 TYR A 374 PHE A 375 -1 O PHE A 375 N PHE A 350 SHEET 1 AA2 4 ILE A 338 ILE A 340 0 SHEET 2 AA2 4 THR A 389 ALA A 392 -1 O ILE A 390 N ILE A 339 SHEET 3 AA2 4 ALA A 357 LYS A 361 -1 N SER A 360 O THR A 389 SHEET 4 AA2 4 LYS A 364 TYR A 369 -1 O TYR A 369 N ALA A 357 SHEET 1 AA3 4 LYS B 329 TYR B 333 0 SHEET 2 AA3 4 CYS B 396 ASP B 402 -1 O VAL B 398 N LYS B 331 SHEET 3 AA3 4 THR B 348 ASP B 354 -1 N PHE B 349 O LEU B 401 SHEET 4 AA3 4 TYR B 374 PHE B 375 -1 O PHE B 375 N PHE B 350 SHEET 1 AA4 4 ILE B 338 ILE B 340 0 SHEET 2 AA4 4 THR B 389 ALA B 392 -1 O ILE B 390 N ILE B 339 SHEET 3 AA4 4 ALA B 357 LYS B 361 -1 N SER B 360 O THR B 389 SHEET 4 AA4 4 LYS B 364 TYR B 369 -1 O TYR B 369 N ALA B 357 SITE 1 AC1 17 ILE A 340 ILE A 366 TYR A 369 PHE A 375 SITE 2 AC1 17 GLY A 376 GLU A 377 LEU A 378 ALA A 379 SITE 3 AC1 17 ARG A 386 ALA A 387 ALA A 388 ILE A 390 SITE 4 AC1 17 TYR A 424 VAL A 427 LEU A 428 HOH A 676 SITE 5 AC1 17 HOH A 682 SITE 1 AC2 15 ILE B 366 TYR B 369 PHE B 375 GLY B 376 SITE 2 AC2 15 GLU B 377 LEU B 378 ALA B 379 ARG B 386 SITE 3 AC2 15 ALA B 387 ALA B 388 ILE B 390 TYR B 424 SITE 4 AC2 15 LEU B 428 HOH B 679 HOH B 685 CRYST1 39.280 71.820 106.470 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025458 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013924 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009392 0.00000