HEADER IMMUNE SYSTEM 31-MAY-16 5K9J TITLE CRYSTAL STRUCTURE OF MULTIDONOR HV6-1-CLASS BROADLY NEUTRALIZING TITLE 2 INFLUENZA A ANTIBODY 56.A.09 ISOLATED FOLLOWING H5 IMMUNIZATION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 56.A.09 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 56.A.09 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS INFLUENZA, MULTIDONOR, H5, UNIVERSAL INFLUENZA VACCINE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.G.JOYCE,P.V.THOMAS,A.K.WHEATLEY,A.B.MCDERMOTT,J.R.MASCOLA,P.D.KWONG REVDAT 3 27-SEP-23 5K9J 1 REMARK REVDAT 2 10-AUG-16 5K9J 1 JRNL REVDAT 1 27-JUL-16 5K9J 0 JRNL AUTH M.G.JOYCE,A.K.WHEATLEY,P.V.THOMAS,G.Y.CHUANG,C.SOTO, JRNL AUTH 2 R.T.BAILER,A.DRUZ,I.S.GEORGIEV,R.A.GILLESPIE,M.KANEKIYO, JRNL AUTH 3 W.P.KONG,K.LEUNG,S.N.NARPALA,M.S.PRABHAKARAN,E.S.YANG, JRNL AUTH 4 B.ZHANG,Y.ZHANG,M.ASOKAN,J.C.BOYINGTON,T.BYLUND,S.DARKO, JRNL AUTH 5 C.R.LEES,A.RANSIER,C.H.SHEN,L.WANG,J.R.WHITTLE,X.WU, JRNL AUTH 6 H.M.YASSINE,C.SANTOS,Y.MATSUOKA,Y.TSYBOVSKY,U.BAXA, JRNL AUTH 7 J.C.MULLIKIN,K.SUBBARAO,D.C.DOUEK,B.S.GRAHAM,R.A.KOUP, JRNL AUTH 8 J.E.LEDGERWOOD,M.ROEDERER,L.SHAPIRO,P.D.KWONG,J.R.MASCOLA, JRNL AUTH 9 A.B.MCDERMOTT JRNL TITL VACCINE-INDUCED ANTIBODIES THAT NEUTRALIZE GROUP 1 AND GROUP JRNL TITL 2 2 INFLUENZA A VIRUSES. JRNL REF CELL V. 166 609 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 27453470 JRNL DOI 10.1016/J.CELL.2016.06.043 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.7 REMARK 3 NUMBER OF REFLECTIONS : 25791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1300 - 3.9583 1.00 4345 240 0.1682 0.2034 REMARK 3 2 3.9583 - 3.1424 1.00 4207 211 0.1854 0.2094 REMARK 3 3 3.1424 - 2.7454 1.00 4159 207 0.2171 0.2917 REMARK 3 4 2.7454 - 2.4945 0.98 4073 187 0.2398 0.2683 REMARK 3 5 2.4945 - 2.3157 0.80 3283 167 0.2386 0.2337 REMARK 3 6 2.3157 - 2.1792 0.58 2387 142 0.2381 0.2892 REMARK 3 7 2.1792 - 2.0701 0.34 1392 60 0.2280 0.2939 REMARK 3 8 2.0701 - 1.9800 0.13 549 28 0.2545 0.4049 REMARK 3 9 1.9800 - 1.9038 0.04 147 7 0.3420 0.4593 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3454 REMARK 3 ANGLE : 0.770 4695 REMARK 3 CHIRALITY : 0.049 534 REMARK 3 PLANARITY : 0.005 593 REMARK 3 DIHEDRAL : 11.402 2078 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0297 36.1852 -15.2912 REMARK 3 T TENSOR REMARK 3 T11: 0.2594 T22: 0.3885 REMARK 3 T33: 0.4997 T12: 0.0455 REMARK 3 T13: 0.0005 T23: -0.1410 REMARK 3 L TENSOR REMARK 3 L11: 2.5648 L22: 2.7997 REMARK 3 L33: 2.3790 L12: -2.0436 REMARK 3 L13: -2.2196 L23: 1.8642 REMARK 3 S TENSOR REMARK 3 S11: -0.2024 S12: 0.0759 S13: -0.3820 REMARK 3 S21: 0.1323 S22: 0.2204 S23: -0.1667 REMARK 3 S31: 0.2934 S32: 0.4251 S33: -0.0329 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 34 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5442 43.4542 -20.8975 REMARK 3 T TENSOR REMARK 3 T11: 0.0517 T22: 0.4192 REMARK 3 T33: 0.6288 T12: -0.0758 REMARK 3 T13: 0.1610 T23: -0.2888 REMARK 3 L TENSOR REMARK 3 L11: 1.9837 L22: 1.7840 REMARK 3 L33: 1.8385 L12: -0.6541 REMARK 3 L13: 0.2316 L23: -0.2448 REMARK 3 S TENSOR REMARK 3 S11: 0.1514 S12: 0.3413 S13: 0.3104 REMARK 3 S21: -0.6913 S22: 0.2408 S23: -1.0292 REMARK 3 S31: -0.2951 S32: 0.7095 S33: 0.2490 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 82A THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2429 40.3318 -22.5334 REMARK 3 T TENSOR REMARK 3 T11: 0.2375 T22: 0.3738 REMARK 3 T33: 0.4711 T12: -0.0318 REMARK 3 T13: 0.0557 T23: -0.1499 REMARK 3 L TENSOR REMARK 3 L11: 0.0360 L22: 2.0625 REMARK 3 L33: 3.3730 L12: -0.3449 REMARK 3 L13: -0.1858 L23: 1.0844 REMARK 3 S TENSOR REMARK 3 S11: 0.0640 S12: 0.2599 S13: -0.0798 REMARK 3 S21: -0.2458 S22: 0.1242 S23: -0.2704 REMARK 3 S31: 0.0228 S32: 0.2804 S33: -0.1672 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 112 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0991 29.9406 -4.4489 REMARK 3 T TENSOR REMARK 3 T11: 0.3238 T22: 0.2458 REMARK 3 T33: 0.5700 T12: -0.0767 REMARK 3 T13: -0.0940 T23: 0.0795 REMARK 3 L TENSOR REMARK 3 L11: 1.4370 L22: 1.3803 REMARK 3 L33: 1.4714 L12: -0.7486 REMARK 3 L13: -0.7485 L23: -0.6645 REMARK 3 S TENSOR REMARK 3 S11: 0.3519 S12: -0.1082 S13: -1.2169 REMARK 3 S21: 0.2422 S22: -0.0426 S23: -0.0077 REMARK 3 S31: 0.5333 S32: -0.3139 S33: 0.0282 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 166 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8784 29.0469 -4.6845 REMARK 3 T TENSOR REMARK 3 T11: 0.3266 T22: 0.2142 REMARK 3 T33: 0.6979 T12: -0.0186 REMARK 3 T13: -0.0383 T23: 0.0733 REMARK 3 L TENSOR REMARK 3 L11: 0.8522 L22: 3.9885 REMARK 3 L33: 2.8886 L12: 1.1474 REMARK 3 L13: -0.1602 L23: 0.1028 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: -0.2127 S13: -1.1196 REMARK 3 S21: 0.2506 S22: 0.0382 S23: -0.2319 REMARK 3 S31: 0.5980 S32: -0.0270 S33: 0.1240 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 204 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2060 24.1306 2.4460 REMARK 3 T TENSOR REMARK 3 T11: 0.5239 T22: 0.6493 REMARK 3 T33: 0.6588 T12: -0.0827 REMARK 3 T13: -0.2605 T23: 0.2916 REMARK 3 L TENSOR REMARK 3 L11: 0.7426 L22: 4.5700 REMARK 3 L33: 3.3079 L12: 0.6685 REMARK 3 L13: 0.7271 L23: 0.8982 REMARK 3 S TENSOR REMARK 3 S11: 0.6207 S12: -0.7597 S13: -0.2896 REMARK 3 S21: 0.1876 S22: -0.2735 S23: -0.2657 REMARK 3 S31: 0.7485 S32: -0.2912 S33: 0.1444 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1674 43.2439 -38.2722 REMARK 3 T TENSOR REMARK 3 T11: 0.3952 T22: 0.4052 REMARK 3 T33: 0.7407 T12: 0.0084 REMARK 3 T13: 0.0312 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 5.0729 L22: 1.6773 REMARK 3 L33: 2.7594 L12: 1.2606 REMARK 3 L13: -1.6688 L23: -0.2619 REMARK 3 S TENSOR REMARK 3 S11: 0.4405 S12: 0.1416 S13: 1.2879 REMARK 3 S21: -0.2618 S22: -0.2476 S23: 0.2547 REMARK 3 S31: -0.3875 S32: -0.0977 S33: -0.1315 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4780 35.4486 -32.1356 REMARK 3 T TENSOR REMARK 3 T11: 0.2656 T22: 0.3478 REMARK 3 T33: 0.4243 T12: -0.0303 REMARK 3 T13: 0.0222 T23: -0.1265 REMARK 3 L TENSOR REMARK 3 L11: 4.4762 L22: 1.3986 REMARK 3 L33: 4.0059 L12: 0.1204 REMARK 3 L13: 0.2372 L23: 1.1360 REMARK 3 S TENSOR REMARK 3 S11: 0.4738 S12: -0.1031 S13: -0.0015 REMARK 3 S21: 0.0709 S22: 0.1132 S23: 0.0443 REMARK 3 S31: 0.0947 S32: 0.0971 S33: -0.0892 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 49 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5936 34.1818 -38.2826 REMARK 3 T TENSOR REMARK 3 T11: 0.2385 T22: 0.3458 REMARK 3 T33: 0.3883 T12: 0.0135 REMARK 3 T13: -0.0279 T23: -0.0993 REMARK 3 L TENSOR REMARK 3 L11: 5.9864 L22: 1.7811 REMARK 3 L33: 3.5414 L12: -0.2595 REMARK 3 L13: -0.0516 L23: -0.2056 REMARK 3 S TENSOR REMARK 3 S11: 0.1606 S12: 0.1226 S13: -0.0277 REMARK 3 S21: -0.1440 S22: -0.0504 S23: 0.0315 REMARK 3 S31: 0.0216 S32: 0.0422 S33: -0.1919 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 92 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7556 36.0393 -16.7439 REMARK 3 T TENSOR REMARK 3 T11: 0.2432 T22: 0.2288 REMARK 3 T33: 0.3432 T12: -0.0584 REMARK 3 T13: -0.0611 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 3.0703 L22: 1.0895 REMARK 3 L33: 4.0417 L12: 0.4249 REMARK 3 L13: -1.7780 L23: -0.5770 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: -0.0983 S13: -0.4795 REMARK 3 S21: -0.0405 S22: -0.0512 S23: -0.1145 REMARK 3 S31: 0.0463 S32: -0.1053 S33: -0.3112 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 129 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7356 36.8011 -12.0124 REMARK 3 T TENSOR REMARK 3 T11: 0.2660 T22: 0.3087 REMARK 3 T33: 0.3796 T12: -0.0843 REMARK 3 T13: -0.0312 T23: 0.0710 REMARK 3 L TENSOR REMARK 3 L11: 3.2241 L22: 2.6394 REMARK 3 L33: 9.2047 L12: 1.0984 REMARK 3 L13: -1.1544 L23: 1.6849 REMARK 3 S TENSOR REMARK 3 S11: 0.3172 S12: 0.0749 S13: 0.4263 REMARK 3 S21: -0.2532 S22: 0.3621 S23: 0.3929 REMARK 3 S31: -0.2916 S32: -0.8080 S33: -0.3459 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 151 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3428 37.1874 -7.7154 REMARK 3 T TENSOR REMARK 3 T11: 0.2711 T22: 0.4453 REMARK 3 T33: 0.4748 T12: -0.0941 REMARK 3 T13: -0.0306 T23: 0.0802 REMARK 3 L TENSOR REMARK 3 L11: 3.6222 L22: 3.1580 REMARK 3 L33: 5.4233 L12: 0.8906 REMARK 3 L13: -0.5847 L23: 0.7080 REMARK 3 S TENSOR REMARK 3 S11: 0.3699 S12: -0.0981 S13: 0.3807 REMARK 3 S21: 0.1250 S22: 0.1034 S23: 0.4334 REMARK 3 S31: -0.2582 S32: -0.7442 S33: -0.2492 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25791 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BVK, 4LSS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, PH 5.5, 25% (W/V) REMARK 280 PEG-400 AND 11% (W/V) PEG-8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.39500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.87900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.39500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.87900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG H 33 O HOH H 401 1.89 REMARK 500 O HOH L 357 O HOH L 362 1.90 REMARK 500 O HOH H 408 O HOH H 457 2.03 REMARK 500 O HOH L 335 O HOH L 349 2.05 REMARK 500 O HOH H 469 O HOH H 476 2.05 REMARK 500 O THR H 17 O HOH H 402 2.06 REMARK 500 O HOH H 466 O HOH H 470 2.15 REMARK 500 O HOH H 409 O HOH H 448 2.15 REMARK 500 O GLU L 1 O HOH L 301 2.16 REMARK 500 OE1 GLN H 16 O HOH H 403 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 464 O HOH L 307 2565 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE H 100 CB - CA - C ANGL. DEV. = -29.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG H 52B 73.14 -150.29 REMARK 500 SER H 53 -9.71 67.66 REMARK 500 PHE H 100 61.57 23.70 REMARK 500 ILE H 100B -50.26 -123.18 REMARK 500 ALA L 51 -38.10 72.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 15P H 301 REMARK 610 15P H 302 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 15P H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 15P H 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K9K RELATED DB: PDB REMARK 900 RELATED ID: 5K9O RELATED DB: PDB REMARK 900 RELATED ID: 5K9Q RELATED DB: PDB DBREF 5K9J H 1 215 PDB 5K9J 5K9J 1 215 DBREF 5K9J L 1 211 PDB 5K9J 5K9J 1 211 SEQRES 1 H 228 GLN VAL GLN LEU GLN GLN SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 228 PRO SER GLN THR LEU SER LEU THR CYS VAL ILE SER GLY SEQRES 3 H 228 ASP THR VAL SER SER ASN ARG ALA ALA TRP ASN TRP ILE SEQRES 4 H 228 ARG GLN SER PRO SER ARG GLY LEU GLU TRP LEU GLY ARG SEQRES 5 H 228 THR TYR TYR ARG SER LYS TRP TYR THR ASP TYR ALA VAL SEQRES 6 H 228 SER VAL LYS SER ARG ILE THR ILE THR PRO ASP THR SER SEQRES 7 H 228 LYS ASN GLN PHE SER LEU GLN MET LYS SER VAL THR PRO SEQRES 8 H 228 GLU ASP THR ALA VAL TYR TYR CYS ALA ARG GLY SER ALA SEQRES 9 H 228 MET ILE PHE GLY ILE VAL ILE ILE LEU GLU SER TRP GLY SEQRES 10 H 228 GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 228 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 228 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 228 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 228 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 228 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 228 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 228 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 228 LYS LYS VAL GLU PRO LYS SER SEQRES 1 L 212 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 212 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 212 GLN SER VAL ALA SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 212 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 212 SER SER ARG ALA THR GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 212 SER GLY SER GLY THR ASP PHE ILE LEU THR ILE SER ARG SEQRES 7 L 212 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 212 TYR ASP GLY SER GLN TYR THR PHE GLY GLN GLY THR LYS SEQRES 9 L 212 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 212 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 212 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 212 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 212 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 212 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 212 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 212 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 212 SER PHE ASN ARG HET 15P H 301 14 HET 15P H 302 10 HETNAM 15P POLYETHYLENE GLYCOL (N=34) HETSYN 15P PEG 1500 FORMUL 3 15P 2(C69 H140 O35) FORMUL 5 HOH *143(H2 O) HELIX 1 AA1 THR H 83 THR H 87 5 5 HELIX 2 AA2 SER H 127 LYS H 129 5 3 HELIX 3 AA3 SER H 156 ALA H 158 5 3 HELIX 4 AA4 SER H 187 LEU H 189 5 3 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 ALA L 29 SER L 31 5 3 HELIX 7 AA7 GLU L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 121 SER L 127 1 7 HELIX 9 AA9 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 GLN H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 ILE H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 ILE H 99 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 ALA H 34 SER H 40 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 GLY H 44 TYR H 52A-1 O LEU H 48 N TRP H 36 SHEET 6 AA2 6 TRP H 55 TYR H 59 -1 O TYR H 56 N TYR H 52 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 ILE H 99 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 VAL H 100C TRP H 103 -1 O SER H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 3 LEU L 4 SER L 7 0 SHEET 2 AA7 3 ALA L 19 VAL L 28 -1 O SER L 22 N SER L 7 SHEET 3 AA7 3 PHE L 62 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 1 AA8 6 THR L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 ALA L 84 TYR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA8 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 SER L 53 ARG L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA9 4 THR L 10 LEU L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 ALA L 84 TYR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA9 4 TYR L 96 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O THR L 197 N LYS L 145 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.02 CISPEP 1 PHE H 146 PRO H 147 0 -3.54 CISPEP 2 GLU H 148 PRO H 149 0 0.34 CISPEP 3 SER L 7 PRO L 8 0 -0.37 CISPEP 4 TYR L 140 PRO L 141 0 1.48 SITE 1 AC1 6 GLN H 39 SER H 40 PRO H 41 GLY H 44 SITE 2 AC1 6 TYR L 87 GLN L 100 SITE 1 AC2 8 PRO H 84 THR H 87 VAL H 111 SER H 113 SITE 2 AC2 8 PHE H 146 LEU H 170 GLY H 174 HOH H 411 CRYST1 78.790 103.758 59.983 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016671 0.00000