HEADER HYDROLASE 02-JUN-16 5KAS TITLE MURINE ACID SPHINGOMYELINASE-LIKE PHOSPHODIESTERASE 3B (SMPDL3B) WITH TITLE 2 PHOSPHOCHOLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACID SPHINGOMYELINASE-LIKE PHOSPHODIESTERASE 3B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-435; COMPND 5 SYNONYM: ASM-LIKE PHOSPHODIESTERASE 3B; COMPND 6 EC: 3.1.4.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SMPDL3B, ASML3B; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS PHOSPHOESTERASE, EXTRACELLULAR, MEMBRANE, PHOSPHOCHOLINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GORELIK,K.ILLES,L.X.HEINZ,G.SUPERTI-FURGA,B.NAGAR REVDAT 5 29-JUL-20 5KAS 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 08-JAN-20 5KAS 1 JRNL REVDAT 3 23-NOV-16 5KAS 1 JRNL REVDAT 2 12-OCT-16 5KAS 1 JRNL REVDAT 1 05-OCT-16 5KAS 0 JRNL AUTH A.GORELIK,L.X.HEINZ,K.ILLES,G.SUPERTI-FURGA,B.NAGAR JRNL TITL CRYSTAL STRUCTURE OF THE ACID SPHINGOMYELINASE-LIKE JRNL TITL 2 PHOSPHODIESTERASE SMPDL3B PROVIDES INSIGHTS INTO JRNL TITL 3 DETERMINANTS OF SUBSTRATE SPECIFICITY. JRNL REF J.BIOL.CHEM. V. 291 24054 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27687724 JRNL DOI 10.1074/JBC.M116.755801 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 50344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.9997 - 4.2395 0.99 3075 151 0.1484 0.1720 REMARK 3 2 4.2395 - 3.3662 1.00 2980 182 0.1372 0.1518 REMARK 3 3 3.3662 - 2.9410 1.00 2982 166 0.1524 0.1849 REMARK 3 4 2.9410 - 2.6723 1.00 2959 162 0.1562 0.1764 REMARK 3 5 2.6723 - 2.4808 1.00 2989 137 0.1460 0.1477 REMARK 3 6 2.4808 - 2.3346 0.99 2937 179 0.1500 0.1942 REMARK 3 7 2.3346 - 2.2177 0.97 2882 131 0.2246 0.2648 REMARK 3 8 2.2177 - 2.1212 0.97 2897 145 0.1928 0.2110 REMARK 3 9 2.1212 - 2.0396 0.99 2904 143 0.1579 0.1953 REMARK 3 10 2.0396 - 1.9692 0.99 2956 162 0.1662 0.1822 REMARK 3 11 1.9692 - 1.9076 0.98 2885 159 0.2795 0.2880 REMARK 3 12 1.9076 - 1.8531 0.95 2853 141 0.2863 0.3051 REMARK 3 13 1.8531 - 1.8043 0.98 2881 153 0.2063 0.2612 REMARK 3 14 1.8043 - 1.7603 0.89 2634 144 0.2188 0.2603 REMARK 3 15 1.7603 - 1.7203 0.75 2207 119 0.2177 0.2495 REMARK 3 16 1.7203 - 1.6837 0.65 1894 111 0.2268 0.2583 REMARK 3 17 1.6837 - 1.6500 0.57 1678 90 0.2289 0.2743 REMARK 3 18 1.6500 - 1.6189 0.41 1215 61 0.2314 0.2479 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3597 REMARK 3 ANGLE : 0.792 4934 REMARK 3 CHIRALITY : 0.045 544 REMARK 3 PLANARITY : 0.005 631 REMARK 3 DIHEDRAL : 10.494 2108 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50664 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.619 REMARK 200 RESOLUTION RANGE LOW (A) : 31.993 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, AMMONIUM NITRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 722 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 807 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 908 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 948 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 986 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 9 REMARK 465 ARG A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 LYS A 17 REMARK 465 LEU A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 432 REMARK 465 GLY A 433 REMARK 465 ALA A 434 REMARK 465 LYS A 435 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 203 O HOH A 607 1.44 REMARK 500 OE2 GLU A 156 HH TYR A 167 1.53 REMARK 500 O HOH A 996 O HOH A 1000 2.02 REMARK 500 OD1 ASP A 328 O HOH A 601 2.03 REMARK 500 O LYS A 179 O HOH A 602 2.06 REMARK 500 O HOH A 694 O HOH A 957 2.07 REMARK 500 NH1 ARG A 172 O HOH A 603 2.09 REMARK 500 OD2 ASP A 93 O HOH A 604 2.10 REMARK 500 O HOH A 686 O HOH A 931 2.10 REMARK 500 O HOH A 770 O HOH A 940 2.13 REMARK 500 O3 NAG B 1 O HOH A 605 2.13 REMARK 500 OE2 GLU A 156 O HOH A 606 2.13 REMARK 500 O HOH A 952 O HOH A 959 2.14 REMARK 500 NE2 GLN A 203 O HOH A 607 2.15 REMARK 500 O HOH A 841 O HOH A 961 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 879 O HOH A 973 2555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 30 75.08 39.24 REMARK 500 ASP A 93 79.84 74.77 REMARK 500 ASP A 136 46.33 -89.74 REMARK 500 ASN A 141 -6.94 74.61 REMARK 500 ALA A 145 34.12 -84.89 REMARK 500 HIS A 236 -68.85 -90.69 REMARK 500 HIS A 277 -34.70 78.41 REMARK 500 HIS A 279 -5.73 74.97 REMARK 500 ASP A 369 -168.53 -169.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 28 OD1 REMARK 620 2 HIS A 30 NE2 109.8 REMARK 620 3 ASP A 93 OD2 83.2 92.9 REMARK 620 4 HIS A 279 NE2 91.6 102.2 164.9 REMARK 620 5 PC A 517 O1 155.6 90.3 82.2 97.6 REMARK 620 6 HOH A 604 O 79.9 149.4 58.7 106.5 75.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 ASN A 134 OD1 108.2 REMARK 620 3 HIS A 236 NE2 84.8 88.0 REMARK 620 4 HIS A 277 ND1 153.9 97.9 96.2 REMARK 620 5 PC A 517 O4 87.6 88.8 170.4 93.3 REMARK 620 6 HOH A 604 O 59.3 164.1 99.7 95.0 81.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 135 NE2 REMARK 620 2 PC A 517 O3 97.6 REMARK 620 3 HOH A 897 O 114.3 116.0 REMARK 620 4 HOH A 917 O 111.0 115.6 102.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 267 NE2 REMARK 620 2 ARG A 268 NH2 106.1 REMARK 620 3 HOH A 658 O 94.0 92.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 356 OE1 REMARK 620 2 GLU A 356 OE2 58.3 REMARK 620 3 GLU A 356 OE1 0.0 58.3 REMARK 620 4 GLU A 356 OE2 58.3 0.0 58.3 REMARK 620 5 HOH A 805 O 155.6 97.5 155.6 97.5 REMARK 620 6 HOH A 805 O 105.2 109.8 105.2 109.8 78.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KAR RELATED DB: PDB REMARK 900 5KAR CONTAINS THE SAME PROTEIN DBREF 5KAS A 19 435 UNP P58242 ASM3B_MOUSE 19 435 SEQADV 5KAS ASP A 9 UNP P58242 EXPRESSION TAG SEQADV 5KAS ARG A 10 UNP P58242 EXPRESSION TAG SEQADV 5KAS HIS A 11 UNP P58242 EXPRESSION TAG SEQADV 5KAS HIS A 12 UNP P58242 EXPRESSION TAG SEQADV 5KAS HIS A 13 UNP P58242 EXPRESSION TAG SEQADV 5KAS HIS A 14 UNP P58242 EXPRESSION TAG SEQADV 5KAS HIS A 15 UNP P58242 EXPRESSION TAG SEQADV 5KAS HIS A 16 UNP P58242 EXPRESSION TAG SEQADV 5KAS LYS A 17 UNP P58242 EXPRESSION TAG SEQADV 5KAS LEU A 18 UNP P58242 EXPRESSION TAG SEQRES 1 A 427 ASP ARG HIS HIS HIS HIS HIS HIS LYS LEU GLN LEU GLY SEQRES 2 A 427 ARG PHE TRP HIS ILE SER ASP LEU HIS LEU ASP PRO ASN SEQRES 3 A 427 TYR THR VAL SER LYS ASP PRO LEU GLN VAL CYS PRO SER SEQRES 4 A 427 ALA GLY SER GLN PRO VAL LEU ASN ALA GLY PRO TRP GLY SEQRES 5 A 427 ASP TYR LEU CYS ASP SER PRO TRP ALA LEU ILE ASN SER SEQRES 6 A 427 SER LEU TYR ALA MET LYS GLU ILE GLU PRO LYS PRO ASP SEQRES 7 A 427 PHE ILE LEU TRP THR GLY ASP ASP THR PRO HIS VAL PRO SEQRES 8 A 427 ASN GLU SER LEU GLY GLU ALA ALA VAL LEU ALA ILE VAL SEQRES 9 A 427 GLU ARG LEU THR ASN LEU ILE LYS GLU VAL PHE PRO ASP SEQRES 10 A 427 THR LYS VAL TYR ALA ALA LEU GLY ASN HIS ASP PHE HIS SEQRES 11 A 427 PRO LYS ASN GLN PHE PRO ALA GLN SER ASN ARG ILE TYR SEQRES 12 A 427 ASN GLN VAL ALA GLU LEU TRP ARG PRO TRP LEU SER ASN SEQRES 13 A 427 GLU SER TYR ALA LEU PHE LYS ARG GLY ALA PHE TYR SER SEQRES 14 A 427 GLU LYS LEU PRO GLY PRO SER ARG ALA GLY ARG VAL VAL SEQRES 15 A 427 VAL LEU ASN THR ASN LEU TYR TYR SER ASN ASN GLU GLN SEQRES 16 A 427 THR ALA GLY MET ALA ASP PRO GLY GLU GLN PHE ARG TRP SEQRES 17 A 427 LEU GLY ASP VAL LEU SER ASN ALA SER ARG ASP GLY GLU SEQRES 18 A 427 MET VAL TYR VAL ILE GLY HIS VAL PRO PRO GLY PHE PHE SEQRES 19 A 427 GLU LYS THR GLN ASN LYS ALA TRP PHE ARG GLU SER PHE SEQRES 20 A 427 ASN GLU GLU TYR LEU LYS VAL ILE GLN LYS HIS HIS ARG SEQRES 21 A 427 VAL ILE ALA GLY GLN PHE PHE GLY HIS HIS HIS THR ASP SEQRES 22 A 427 SER PHE ARG MET PHE TYR ASP ASN THR GLY ALA PRO ILE SEQRES 23 A 427 ASN VAL MET PHE LEU THR PRO GLY VAL THR PRO TRP LYS SEQRES 24 A 427 THR THR LEU PRO GLY VAL VAL ASP GLY ALA ASN ASN PRO SEQRES 25 A 427 GLY ILE ARG ILE PHE GLU TYR ASP ARG ALA THR LEU ASN SEQRES 26 A 427 LEU LYS ASP LEU VAL THR TYR PHE LEU ASN LEU ARG GLN SEQRES 27 A 427 ALA ASN VAL GLN GLU THR PRO ARG TRP GLU GLN GLU TYR SEQRES 28 A 427 ARG LEU THR GLU ALA TYR GLN VAL PRO ASP ALA SER VAL SEQRES 29 A 427 SER SER MET HIS THR ALA LEU THR ARG ILE ALA SER GLU SEQRES 30 A 427 PRO HIS ILE LEU GLN ARG TYR TYR VAL TYR ASN SER VAL SEQRES 31 A 427 SER TYR ASN HIS LEU THR CYS GLU ASP SER CYS ARG ILE SEQRES 32 A 427 GLU HIS VAL CYS ALA ILE GLN HIS VAL ALA PHE ASN THR SEQRES 33 A 427 TYR ALA THR CYS LEU HIS GLY LEU GLY ALA LYS HET NAG B 1 27 HET NAG B 2 28 HET NAG C 1 27 HET NAG C 2 27 HET BMA C 3 21 HET MAN C 4 22 HET NAG D 1 26 HET NAG D 2 28 HET FUC D 3 21 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET NO3 A 515 4 HET NO3 A 516 4 HET PC A 517 24 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETNAM NO3 NITRATE ION HETNAM PC PHOSPHOCHOLINE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN C6 H12 O6 FORMUL 4 FUC C6 H12 O5 FORMUL 5 ZN 5(ZN 2+) FORMUL 10 NO3 2(N O3 1-) FORMUL 12 PC C5 H15 N O4 P 1+ FORMUL 13 HOH *403(H2 O) HELIX 1 AA1 ASP A 40 VAL A 44 5 5 HELIX 2 AA2 CYS A 45 GLY A 49 5 5 HELIX 3 AA3 PRO A 67 GLU A 82 1 16 HELIX 4 AA4 PRO A 99 LEU A 103 5 5 HELIX 5 AA5 GLY A 104 PHE A 123 1 20 HELIX 6 AA6 ASN A 148 TRP A 158 1 11 HELIX 7 AA7 ARG A 159 LEU A 162 5 4 HELIX 8 AA8 SER A 163 ALA A 174 1 12 HELIX 9 AA9 ASN A 193 TYR A 198 5 6 HELIX 10 AB1 ASN A 201 ALA A 205 5 5 HELIX 11 AB2 ASP A 209 GLY A 211 5 3 HELIX 12 AB3 GLU A 212 ASP A 227 1 16 HELIX 13 AB4 ARG A 252 HIS A 267 1 16 HELIX 14 AB5 ASN A 343 ASN A 348 1 6 HELIX 15 AB6 LEU A 361 GLN A 366 1 6 HELIX 16 AB7 SER A 371 GLU A 385 1 15 HELIX 17 AB8 GLU A 385 SER A 397 1 13 HELIX 18 AB9 GLU A 406 HIS A 419 1 14 HELIX 19 AC1 ALA A 421 HIS A 430 1 10 SHEET 1 AA1 6 VAL A 128 ALA A 130 0 SHEET 2 AA1 6 PHE A 87 TRP A 90 1 N ILE A 88 O TYR A 129 SHEET 3 AA1 6 GLY A 21 ILE A 26 1 N TRP A 24 O LEU A 89 SHEET 4 AA1 6 GLY A 321 TYR A 327 -1 O PHE A 325 N PHE A 23 SHEET 5 AA1 6 LEU A 334 PHE A 341 -1 O VAL A 338 N ILE A 324 SHEET 6 AA1 6 GLU A 356 ARG A 360 -1 O GLU A 358 N THR A 339 SHEET 1 AA2 6 TYR A 176 LYS A 179 0 SHEET 2 AA2 6 GLY A 187 VAL A 191 -1 O VAL A 191 N TYR A 176 SHEET 3 AA2 6 MET A 230 GLY A 235 1 O TYR A 232 N VAL A 190 SHEET 4 AA2 6 ILE A 270 HIS A 279 1 O GLY A 272 N VAL A 233 SHEET 5 AA2 6 PRO A 293 PRO A 301 1 O PHE A 298 N GLN A 273 SHEET 6 AA2 6 SER A 282 TYR A 287 -1 N PHE A 286 O ILE A 294 SSBOND 1 CYS A 45 CYS A 64 1555 1555 2.02 SSBOND 2 CYS A 405 CYS A 409 1555 1555 2.04 SSBOND 3 CYS A 415 CYS A 428 1555 1555 2.03 LINK ND2 ASN A 34 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 72 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 223 C1 NAG C 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 3 1555 1555 1.45 LINK OD1 ASP A 28 ZN ZN A 502 1555 1555 2.00 LINK NE2 HIS A 30 ZN ZN A 502 1555 1555 2.04 LINK OD2 ASP A 93 ZN ZN A 501 1555 1555 2.19 LINK OD2 ASP A 93 ZN ZN A 502 1555 1555 2.31 LINK OD1 ASN A 134 ZN ZN A 501 1555 1555 2.02 LINK NE2 HIS A 135 ZN ZN A 503 1555 1555 2.08 LINK NE2 HIS A 236 ZN ZN A 501 1555 1555 2.06 LINK NE2 HIS A 267 ZN ZN A 505 1555 1555 2.10 LINK NH2 ARG A 268 ZN ZN A 505 1555 1555 2.61 LINK ND1 HIS A 277 ZN ZN A 501 1555 1555 2.10 LINK NE2 HIS A 279 ZN ZN A 502 1555 1555 2.06 LINK OE1 GLU A 356 ZN ZN A 504 1555 1555 2.33 LINK OE2 GLU A 356 ZN ZN A 504 1555 1555 2.18 LINK OE1 GLU A 356 ZN ZN A 504 1555 2555 2.33 LINK OE2 GLU A 356 ZN ZN A 504 1555 2555 2.18 LINK ZN ZN A 501 O4 PC A 517 1555 1555 2.12 LINK ZN ZN A 501 O HOH A 604 1555 1555 2.04 LINK ZN ZN A 502 O1 PC A 517 1555 1555 2.10 LINK ZN ZN A 502 O HOH A 604 1555 1555 1.90 LINK ZN ZN A 503 O3 PC A 517 1555 1555 1.83 LINK ZN ZN A 503 O HOH A 897 1555 1555 2.10 LINK ZN ZN A 503 O HOH A 917 1555 1555 2.25 LINK ZN ZN A 504 O HOH A 805 1555 1555 2.61 LINK ZN ZN A 504 O HOH A 805 1555 2555 2.61 LINK ZN ZN A 505 O HOH A 658 1555 1555 2.41 CISPEP 1 HIS A 138 PRO A 139 0 -5.10 CISPEP 2 GLY A 182 PRO A 183 0 7.12 CRYST1 50.892 47.031 93.861 90.00 98.07 90.00 P 1 2 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019649 0.000000 0.002786 0.00000 SCALE2 0.000000 0.021263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010761 0.00000