HEADER TRANSFERASE 02-JUN-16 5KB5 TITLE CRYSTAL STRUCTURE OF THE ADENOSINE KINASE FROM MUS MUSCULUS IN COMPLEX TITLE 2 WITH ADENOSINE AND ADENOSINE-DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AK,ADENOSINE 5'-PHOSPHOTRANSFERASE; COMPND 5 EC: 2.7.1.20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ADK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENOSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.R.OLIVEIRA,R.M.NETO,C.C.POLO,C.C.C.TONOLI,M.T.MURAKAMI, AUTHOR 2 K.G.FRANCHINI REVDAT 3 27-SEP-23 5KB5 1 LINK REVDAT 2 14-JUN-17 5KB5 1 AUTHOR REVDAT 1 07-JUN-17 5KB5 0 JRNL AUTH R.R.OLIVEIRA,R.M.NETO,C.C.POLO,C.C.C.TONOLI,M.T.MURAKAMI, JRNL AUTH 2 K.G.FRANCHINI JRNL TITL CRYSTAL STRUCTURE OF THE ADENOSINE KINASE FROM MUS MUSCULUS JRNL TITL 2 IN COMPLEX WITH ADENOSINE AND ADENOSINE-DIPHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 27048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1450 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1947 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2679 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.081 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2824 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2678 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3820 ; 1.849 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6171 ; 1.053 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 5.705 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;38.768 ;24.924 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;14.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.545 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3163 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 646 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1367 ; 0.686 ; 1.088 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1366 ; 0.686 ; 1.087 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1708 ; 1.098 ; 1.628 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 149.8613 153.9417 189.8536 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.0730 REMARK 3 T33: 0.0820 T12: -0.0204 REMARK 3 T13: -0.0027 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.7075 L22: 1.0447 REMARK 3 L33: 3.2444 L12: -0.3408 REMARK 3 L13: -0.3793 L23: 0.8385 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: 0.0194 S13: -0.1163 REMARK 3 S21: 0.0240 S22: 0.0137 S23: 0.0371 REMARK 3 S31: 0.1840 S32: -0.1690 S33: -0.0218 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 155.2104 162.1326 168.1717 REMARK 3 T TENSOR REMARK 3 T11: 0.2117 T22: 0.2376 REMARK 3 T33: 0.0310 T12: 0.0164 REMARK 3 T13: 0.0040 T23: 0.0736 REMARK 3 L TENSOR REMARK 3 L11: 3.1216 L22: 3.6943 REMARK 3 L33: 3.5763 L12: 0.0862 REMARK 3 L13: 0.8030 L23: 2.2833 REMARK 3 S TENSOR REMARK 3 S11: -0.0531 S12: 0.7354 S13: 0.2812 REMARK 3 S21: -0.7006 S22: -0.0892 S23: -0.0363 REMARK 3 S31: -0.4912 S32: 0.1507 S33: 0.1423 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 145.9390 150.5915 189.1792 REMARK 3 T TENSOR REMARK 3 T11: 0.0881 T22: 0.0624 REMARK 3 T33: 0.0389 T12: -0.0118 REMARK 3 T13: -0.0048 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.7332 L22: 1.1553 REMARK 3 L33: 1.3659 L12: -0.2396 REMARK 3 L13: -0.0939 L23: -0.4026 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.0872 S13: -0.1877 REMARK 3 S21: -0.0267 S22: 0.0305 S23: 0.1353 REMARK 3 S31: 0.1629 S32: -0.1474 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 148.7371 159.8708 178.0317 REMARK 3 T TENSOR REMARK 3 T11: 0.1394 T22: 0.1103 REMARK 3 T33: 0.0392 T12: -0.0154 REMARK 3 T13: -0.0216 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 15.6767 L22: 2.4860 REMARK 3 L33: 5.4419 L12: -2.5552 REMARK 3 L13: -6.8090 L23: 1.2868 REMARK 3 S TENSOR REMARK 3 S11: 0.2017 S12: 0.6549 S13: 0.5359 REMARK 3 S21: -0.1258 S22: -0.0249 S23: -0.0214 REMARK 3 S31: -0.1001 S32: -0.3851 S33: -0.1767 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 144.0062 162.2916 195.7566 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.0675 REMARK 3 T33: 0.0707 T12: -0.0033 REMARK 3 T13: 0.0002 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.5236 L22: 0.9751 REMARK 3 L33: 3.1661 L12: -0.1146 REMARK 3 L13: -1.1276 L23: 0.1675 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: -0.0898 S13: 0.1909 REMARK 3 S21: 0.0985 S22: 0.0558 S23: 0.1210 REMARK 3 S31: -0.0102 S32: -0.2859 S33: -0.0698 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): 161.5654 166.6481 194.7996 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.0618 REMARK 3 T33: 0.0761 T12: -0.0005 REMARK 3 T13: -0.0080 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.8459 L22: 1.1489 REMARK 3 L33: 1.1012 L12: -0.1467 REMARK 3 L13: -0.1803 L23: 0.0193 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: -0.0426 S13: 0.3131 REMARK 3 S21: 0.0070 S22: 0.0279 S23: -0.1145 REMARK 3 S31: -0.0835 S32: 0.0491 S33: -0.0552 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 278 REMARK 3 ORIGIN FOR THE GROUP (A): 167.2617 165.0726 204.9981 REMARK 3 T TENSOR REMARK 3 T11: 0.0773 T22: 0.1372 REMARK 3 T33: 0.0693 T12: 0.0149 REMARK 3 T13: -0.0644 T23: -0.0501 REMARK 3 L TENSOR REMARK 3 L11: 3.5520 L22: 4.2341 REMARK 3 L33: 5.7896 L12: 0.1574 REMARK 3 L13: -1.4089 L23: 0.8708 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: -0.6179 S13: 0.1820 REMARK 3 S21: 0.2947 S22: 0.0645 S23: -0.2962 REMARK 3 S31: 0.1017 S32: 0.3487 S33: -0.1100 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 279 A 313 REMARK 3 ORIGIN FOR THE GROUP (A): 171.7133 151.4760 187.4178 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.0914 REMARK 3 T33: 0.0978 T12: 0.0333 REMARK 3 T13: 0.0143 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 5.3922 L22: 3.5717 REMARK 3 L33: 2.1293 L12: 0.0352 REMARK 3 L13: 1.1281 L23: -0.1400 REMARK 3 S TENSOR REMARK 3 S11: 0.0823 S12: 0.2013 S13: -0.1744 REMARK 3 S21: -0.0468 S22: 0.0047 S23: -0.4915 REMARK 3 S31: 0.1948 S32: 0.2347 S33: -0.0870 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 314 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): 161.7579 145.7409 191.3056 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.0684 REMARK 3 T33: 0.0639 T12: 0.0198 REMARK 3 T13: 0.0002 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.4111 L22: 1.2323 REMARK 3 L33: 2.0086 L12: -0.0782 REMARK 3 L13: 0.1315 L23: 0.1763 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: -0.0462 S13: -0.2563 REMARK 3 S21: 0.0331 S22: 0.0219 S23: 0.0195 REMARK 3 S31: 0.1376 S32: 0.0163 S33: -0.0264 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000203402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.459 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28540 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.73200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1BX4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG400 15% PEG1000 0.15M SODIUM DI REMARK 280 -POTASSIUM PHOSPHATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.63200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.16500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.77950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.16500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.63200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.77950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 GLU A 7 REMARK 465 ASN A 8 REMARK 465 LEU A 9 REMARK 465 TYR A 10 REMARK 465 PHE A 11 REMARK 465 GLN A 12 REMARK 465 GLY A 13 REMARK 465 HIS A 14 REMARK 465 MET A 15 REMARK 465 ALA A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 361 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 285 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 310 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 310 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 94 -64.01 67.43 REMARK 500 ALA A 155 -120.96 46.75 REMARK 500 HIS A 165 -73.65 -145.21 REMARK 500 SER A 214 -55.42 74.06 REMARK 500 GLN A 282 40.35 -144.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 310 O REMARK 620 2 ASP A 310 OD1 63.1 REMARK 620 3 ASN A 312 O 100.3 81.1 REMARK 620 4 ILE A 346 O 89.6 149.6 119.0 REMARK 620 5 ARG A 349 O 88.9 91.1 163.6 74.3 REMARK 620 6 GLY A 351 O 177.5 115.5 77.3 92.2 93.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 402 O2B REMARK 620 2 HOH A 514 O 93.6 REMARK 620 3 HOH A 517 O 168.2 84.1 REMARK 620 4 HOH A 554 O 82.5 90.3 86.0 REMARK 620 5 HOH A 555 O 105.8 80.1 85.3 167.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 402 O1A REMARK 620 2 HOH A 522 O 100.0 REMARK 620 3 HOH A 534 O 170.8 88.6 REMARK 620 4 HOH A 538 O 88.4 129.2 88.6 REMARK 620 5 HOH A 568 O 84.2 104.8 90.5 125.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KB6 RELATED DB: PDB DBREF 5KB5 A 20 361 UNP P55264 ADK_MOUSE 20 361 SEQADV 5KB5 MET A -1 UNP P55264 INITIATING METHIONINE SEQADV 5KB5 GLY A 0 UNP P55264 EXPRESSION TAG SEQADV 5KB5 HIS A 1 UNP P55264 EXPRESSION TAG SEQADV 5KB5 HIS A 2 UNP P55264 EXPRESSION TAG SEQADV 5KB5 HIS A 3 UNP P55264 EXPRESSION TAG SEQADV 5KB5 HIS A 4 UNP P55264 EXPRESSION TAG SEQADV 5KB5 HIS A 5 UNP P55264 EXPRESSION TAG SEQADV 5KB5 HIS A 6 UNP P55264 EXPRESSION TAG SEQADV 5KB5 GLU A 7 UNP P55264 EXPRESSION TAG SEQADV 5KB5 ASN A 8 UNP P55264 EXPRESSION TAG SEQADV 5KB5 LEU A 9 UNP P55264 EXPRESSION TAG SEQADV 5KB5 TYR A 10 UNP P55264 EXPRESSION TAG SEQADV 5KB5 PHE A 11 UNP P55264 EXPRESSION TAG SEQADV 5KB5 GLN A 12 UNP P55264 EXPRESSION TAG SEQADV 5KB5 GLY A 13 UNP P55264 EXPRESSION TAG SEQADV 5KB5 HIS A 14 UNP P55264 EXPRESSION TAG SEQADV 5KB5 MET A 15 UNP P55264 EXPRESSION TAG SEQADV 5KB5 ALA A 16 UNP P55264 EXPRESSION TAG SEQADV 5KB5 SER A 17 UNP P55264 EXPRESSION TAG SEQADV 5KB5 GLY A 18 UNP P55264 EXPRESSION TAG SEQADV 5KB5 SER A 19 UNP P55264 EXPRESSION TAG SEQRES 1 A 363 MET GLY HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE SEQRES 2 A 363 GLN GLY HIS MET ALA SER GLY SER LEU SER GLU ASN VAL SEQRES 3 A 363 LEU PHE GLY MET GLY ASN PRO LEU LEU ASP ILE SER ALA SEQRES 4 A 363 VAL VAL ASP LYS ASP PHE LEU ASP LYS TYR SER LEU LYS SEQRES 5 A 363 PRO ASN ASP GLN ILE LEU ALA GLU ASP LYS HIS LYS GLU SEQRES 6 A 363 LEU PHE ASP GLU LEU VAL LYS LYS PHE LYS VAL GLU TYR SEQRES 7 A 363 HIS ALA GLY GLY SER THR GLN ASN SER MET LYS VAL ALA SEQRES 8 A 363 GLN TRP LEU ILE GLN GLU PRO HIS LYS ALA ALA THR PHE SEQRES 9 A 363 PHE GLY CYS ILE GLY ILE ASP LYS PHE GLY GLU ILE LEU SEQRES 10 A 363 LYS ARG LYS ALA ALA ASP ALA HIS VAL ASP ALA HIS TYR SEQRES 11 A 363 TYR GLU GLN ASN GLU GLN PRO THR GLY THR CYS ALA ALA SEQRES 12 A 363 CYS ILE THR GLY GLY ASN ARG SER LEU VAL ALA ASN LEU SEQRES 13 A 363 ALA ALA ALA ASN CYS TYR LYS LYS GLU LYS HIS LEU ASP SEQRES 14 A 363 LEU GLU ARG ASN TRP VAL LEU VAL GLU LYS ALA ARG VAL SEQRES 15 A 363 TYR TYR ILE ALA GLY PHE PHE LEU THR VAL SER PRO GLU SEQRES 16 A 363 SER VAL LEU LYS VAL ALA ARG TYR ALA ALA GLU ASN ASN SEQRES 17 A 363 ARG VAL PHE THR LEU ASN LEU SER ALA PRO PHE ILE SER SEQRES 18 A 363 GLN PHE PHE LYS GLU ALA LEU MET ASP VAL MET PRO TYR SEQRES 19 A 363 VAL ASP ILE LEU PHE GLY ASN GLU THR GLU ALA ALA THR SEQRES 20 A 363 PHE ALA ARG GLU GLN GLY PHE GLU THR LYS ASP ILE LYS SEQRES 21 A 363 GLU ILE ALA LYS LYS ALA GLN ALA LEU PRO LYS VAL ASN SEQRES 22 A 363 SER LYS ARG GLN ARG THR VAL ILE PHE THR GLN GLY ARG SEQRES 23 A 363 ASP ASP THR ILE VAL ALA ALA GLU ASN ASP VAL THR ALA SEQRES 24 A 363 PHE PRO VAL LEU ASP GLN ASN GLN GLU GLU ILE ILE ASP SEQRES 25 A 363 THR ASN GLY ALA GLY ASP ALA PHE VAL GLY GLY PHE LEU SEQRES 26 A 363 SER GLN LEU VAL SER ASP LYS PRO LEU THR GLU CYS ILE SEQRES 27 A 363 ARG ALA GLY HIS TYR ALA ALA SER VAL ILE ILE ARG ARG SEQRES 28 A 363 THR GLY CYS THR PHE PRO GLU LYS PRO ASP PHE HIS HET ADN A 401 19 HET ADP A 402 27 HET K A 403 1 HET CL A 404 1 HET MG A 405 1 HET MG A 406 1 HET PG4 A 407 13 HET PG4 A 408 13 HET PO4 A 409 5 HET PO4 A 410 5 HETNAM ADN ADENOSINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PO4 PHOSPHATE ION FORMUL 2 ADN C10 H13 N5 O4 FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 K K 1+ FORMUL 5 CL CL 1- FORMUL 6 MG 2(MG 2+) FORMUL 8 PG4 2(C8 H18 O5) FORMUL 10 PO4 2(O4 P 3-) FORMUL 12 HOH *131(H2 O) HELIX 1 AA1 ASP A 40 TYR A 47 1 8 HELIX 2 AA2 GLU A 58 LYS A 60 5 3 HELIX 3 AA3 HIS A 61 PHE A 72 1 12 HELIX 4 AA4 GLY A 80 GLN A 94 1 15 HELIX 5 AA5 ASP A 109 ALA A 122 1 14 HELIX 6 AA6 LEU A 154 TYR A 160 5 7 HELIX 7 AA7 LYS A 161 HIS A 165 5 5 HELIX 8 AA8 LEU A 168 ALA A 178 1 11 HELIX 9 AA9 PHE A 186 VAL A 190 5 5 HELIX 10 AB1 SER A 191 ASN A 205 1 15 HELIX 11 AB2 ALA A 215 PHE A 222 1 8 HELIX 12 AB3 PHE A 222 MET A 230 1 9 HELIX 13 AB4 PRO A 231 VAL A 233 5 3 HELIX 14 AB5 GLU A 240 GLN A 250 1 11 HELIX 15 AB6 ASP A 256 ALA A 266 1 11 HELIX 16 AB7 ASN A 304 ILE A 308 5 5 HELIX 17 AB8 GLY A 313 VAL A 327 1 15 HELIX 18 AB9 PRO A 331 ILE A 347 1 17 SHEET 1 AA1 9 ASP A 125 GLN A 131 0 SHEET 2 AA1 9 ALA A 100 GLY A 107 1 N ALA A 100 O ASP A 125 SHEET 3 AA1 9 LEU A 25 MET A 28 1 N LEU A 25 O THR A 101 SHEET 4 AA1 9 VAL A 180 ALA A 184 1 O TYR A 182 N PHE A 26 SHEET 5 AA1 9 VAL A 208 ASN A 212 1 O VAL A 208 N TYR A 181 SHEET 6 AA1 9 ILE A 235 ASN A 239 1 O PHE A 237 N LEU A 211 SHEET 7 AA1 9 THR A 277 GLN A 282 1 O ILE A 279 N LEU A 236 SHEET 8 AA1 9 ASP A 285 ALA A 291 -1 O ILE A 288 N PHE A 280 SHEET 9 AA1 9 ASP A 294 PHE A 298 -1 O PHE A 298 N THR A 287 SHEET 1 AA2 5 ASP A 53 LEU A 56 0 SHEET 2 AA2 5 ASN A 147 ASN A 153 1 O LEU A 150 N ASP A 53 SHEET 3 AA2 5 GLY A 137 THR A 144 -1 N THR A 138 O ASN A 153 SHEET 4 AA2 5 LEU A 32 VAL A 38 1 N ILE A 35 O CYS A 139 SHEET 5 AA2 5 GLU A 75 GLY A 79 -1 O GLY A 79 N LEU A 32 LINK O ASP A 310 K K A 403 1555 1555 2.68 LINK OD1 ASP A 310 K K A 403 1555 1555 2.81 LINK O ASN A 312 K K A 403 1555 1555 2.83 LINK O ILE A 346 K K A 403 1555 1555 2.71 LINK O ARG A 349 K K A 403 1555 1555 2.59 LINK O GLY A 351 K K A 403 1555 1555 2.59 LINK O2B ADP A 402 MG MG A 405 1555 1555 2.33 LINK O1A ADP A 402 MG MG A 406 1555 1555 2.29 LINK MG MG A 405 O HOH A 514 1555 1555 2.28 LINK MG MG A 405 O HOH A 517 1555 1555 2.26 LINK MG MG A 405 O HOH A 554 1555 1555 2.01 LINK MG MG A 405 O HOH A 555 1555 1555 2.40 LINK MG MG A 406 O HOH A 522 1555 1555 2.50 LINK MG MG A 406 O HOH A 534 1555 1555 2.20 LINK MG MG A 406 O HOH A 538 1555 1555 2.34 LINK MG MG A 406 O HOH A 568 1555 1555 2.21 CISPEP 1 GLU A 95 PRO A 96 0 1.61 SITE 1 AC1 18 ASN A 30 LEU A 32 ASP A 34 GLY A 79 SITE 2 AC1 18 GLY A 80 SER A 81 ASN A 84 CYS A 139 SITE 3 AC1 18 ALA A 152 PHE A 186 ASN A 312 GLY A 313 SITE 4 AC1 18 ASP A 316 CL A 404 HOH A 563 HOH A 567 SITE 5 AC1 18 HOH A 585 HOH A 607 SITE 1 AC2 27 ARG A 148 ASN A 239 THR A 281 GLN A 282 SITE 2 AC2 27 GLY A 283 ARG A 284 THR A 287 ASP A 302 SITE 3 AC2 27 GLN A 305 ILE A 308 ALA A 314 GLY A 315 SITE 4 AC2 27 HIS A 340 ALA A 343 MG A 405 MG A 406 SITE 5 AC2 27 HOH A 512 HOH A 518 HOH A 521 HOH A 522 SITE 6 AC2 27 HOH A 527 HOH A 535 HOH A 538 HOH A 554 SITE 7 AC2 27 HOH A 563 HOH A 568 HOH A 616 SITE 1 AC3 5 ASP A 310 ASN A 312 ILE A 346 ARG A 349 SITE 2 AC3 5 GLY A 351 SITE 1 AC4 4 GLY A 29 ASN A 30 THR A 82 ADN A 401 SITE 1 AC5 5 ADP A 402 HOH A 514 HOH A 517 HOH A 554 SITE 2 AC5 5 HOH A 555 SITE 1 AC6 5 ADP A 402 HOH A 522 HOH A 534 HOH A 538 SITE 2 AC6 5 HOH A 568 SITE 1 AC7 4 HIS A 97 ALA A 120 HIS A 123 GLU A 356 SITE 1 AC8 6 LEU A 168 ASP A 256 LYS A 262 ASP A 294 SITE 2 AC8 6 VAL A 295 HOH A 589 SITE 1 AC9 4 HIS A 127 ARG A 170 LYS A 258 HOH A 544 SITE 1 AD1 6 HIS A 77 LYS A 118 THR A 353 HOH A 509 SITE 2 AD1 6 HOH A 587 HOH A 600 CRYST1 49.264 73.559 84.330 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020299 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011858 0.00000