HEADER TRANSFERASE 07-JUN-16 5KCY
TITLE CRYSTAL STRUCTURE OF THE AROMATIC PRENYLTRANSFERASE ATAPT FROM
TITLE 2 ASPERGILLUS TERREUS A8-4 IN COMPLEX WITH GERANYL S-THIOLODIPHOSPHATE
TITLE 3 AND (+)-BUTYROLACTONE II
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: AROMATIC PRENYLTRANSFERASE;
COMPND 3 CHAIN: A, B;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS TERREUS;
SOURCE 3 ORGANISM_TAXID: 33178;
SOURCE 4 STRAIN: A8-4;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS SUBSTRATE PROMISCUITY, ABBA FOLD, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR F.SUN,B.GAO
REVDAT 3 20-MAR-24 5KCY 1 REMARK
REVDAT 2 05-JUL-17 5KCY 1 JRNL
REVDAT 1 21-DEC-16 5KCY 0
JRNL AUTH R.CHEN,B.GAO,X.LIU,F.RUAN,Y.ZHANG,J.LOU,K.FENG,C.WUNSCH,
JRNL AUTH 2 S.M.LI,J.DAI,F.SUN
JRNL TITL MOLECULAR INSIGHTS INTO THE ENZYME PROMISCUITY OF AN
JRNL TITL 2 AROMATIC PRENYLTRANSFERASE.
JRNL REF NAT. CHEM. BIOL. V. 13 226 2017
JRNL REFN ESSN 1552-4469
JRNL PMID 27992881
JRNL DOI 10.1038/NCHEMBIO.2263
REMARK 2
REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0135
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.37
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6
REMARK 3 NUMBER OF REFLECTIONS : 37460
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.206
REMARK 3 R VALUE (WORKING SET) : 0.204
REMARK 3 FREE R VALUE : 0.246
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900
REMARK 3 FREE R VALUE TEST SET COUNT : 1950
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2600
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.70
REMARK 3 BIN R VALUE (WORKING SET) : 0.2590
REMARK 3 BIN FREE R VALUE SET COUNT : 117
REMARK 3 BIN FREE R VALUE : 0.3210
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 6082
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 90
REMARK 3 SOLVENT ATOMS : 81
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.09
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.01000
REMARK 3 B22 (A**2) : 1.16000
REMARK 3 B33 (A**2) : -1.17000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.342
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.189
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6325 ; 0.016 ; 0.020
REMARK 3 BOND LENGTHS OTHERS (A): 6075 ; 0.006 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8607 ; 1.843 ; 1.990
REMARK 3 BOND ANGLES OTHERS (DEGREES): 13982 ; 1.372 ; 3.003
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 760 ; 6.384 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;36.348 ;24.067
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1052 ;16.305 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;12.761 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 965 ; 0.107 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6995 ; 0.010 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 1414 ; 0.005 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3058 ; 3.335 ; 3.587
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3057 ; 3.336 ; 3.587
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3812 ; 5.050 ; 5.372
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3813 ; 5.049 ; 5.372
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3267 ; 3.927 ; 4.084
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3268 ; 3.927 ; 4.084
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4796 ; 6.228 ; 5.904
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6882 ; 8.115 ;28.585
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6868 ; 8.117 ;28.595
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NCS TYPE: LOCAL
REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1
REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT
REMARK 3 1 A 11 421 B 11 421 46060 0.10 0.05
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 5KCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-16.
REMARK 100 THE DEPOSITION ID IS D_1000219184.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 25-SEP-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRF
REMARK 200 BEAMLINE : BL17U
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39454
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300
REMARK 200 RESOLUTION RANGE LOW (A) : 134.910
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0
REMARK 200 DATA REDUNDANCY : 3.700
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.08300
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42
REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2
REMARK 200 DATA REDUNDANCY IN SHELL : 3.20
REMARK 200 R MERGE FOR SHELL (I) : 0.28800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.45
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM BIS-TRIS, 0.2 M (NH4)2SO4, 17%
REMARK 280 PEG3350, 3.3% DDM, PH 6.0, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 289K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X+1/2,Y+1/2,-Z
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.47500
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.45500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.47500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.45500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 13140 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 54830 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 193.90000
REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 6
REMARK 465 PRO A 7
REMARK 465 LEU A 8
REMARK 465 GLY A 9
REMARK 465 SER A 10
REMARK 465 ARG A 71
REMARK 465 ARG A 72
REMARK 465 PRO A 73
REMARK 465 GLY A 74
REMARK 465 VAL A 75
REMARK 465 GLU A 76
REMARK 465 PRO A 77
REMARK 465 GLU A 78
REMARK 465 TYR A 79
REMARK 465 ILE A 80
REMARK 465 SER A 81
REMARK 465 GLY A 82
REMARK 465 LEU A 83
REMARK 465 SER A 84
REMARK 465 HIS A 85
REMARK 465 GLY A 86
REMARK 465 GLY A 87
REMARK 465 LYS A 309
REMARK 465 LEU A 310
REMARK 465 GLY A 311
REMARK 465 ASP A 312
REMARK 465 GLU A 313
REMARK 465 ALA A 314
REMARK 465 CYS A 315
REMARK 465 GLU A 316
REMARK 465 THR A 317
REMARK 465 LEU A 318
REMARK 465 ASP A 319
REMARK 465 ALA A 320
REMARK 465 GLU A 321
REMARK 465 ALA A 422
REMARK 465 ARG A 423
REMARK 465 VAL A 424
REMARK 465 GLY B 6
REMARK 465 PRO B 7
REMARK 465 LEU B 8
REMARK 465 GLY B 9
REMARK 465 SER B 10
REMARK 465 ARG B 71
REMARK 465 ARG B 72
REMARK 465 PRO B 73
REMARK 465 GLY B 74
REMARK 465 VAL B 75
REMARK 465 GLU B 76
REMARK 465 PRO B 77
REMARK 465 GLU B 78
REMARK 465 TYR B 79
REMARK 465 ILE B 80
REMARK 465 SER B 81
REMARK 465 GLY B 82
REMARK 465 LEU B 83
REMARK 465 SER B 84
REMARK 465 GLY B 311
REMARK 465 ASP B 312
REMARK 465 GLU B 313
REMARK 465 ALA B 314
REMARK 465 CYS B 315
REMARK 465 GLU B 316
REMARK 465 THR B 317
REMARK 465 LEU B 318
REMARK 465 ASP B 319
REMARK 465 ALA B 320
REMARK 465 GLU B 321
REMARK 465 ARG B 322
REMARK 465 ALA B 422
REMARK 465 ARG B 423
REMARK 465 VAL B 424
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH B 615 O HOH B 643 1.56
REMARK 500 O HOH B 617 O HOH B 643 1.97
REMARK 500 NH1 ARG A 11 OE1 GLU A 43 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 MET A 331 CG - SD - CE ANGL. DEV. = 9.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 THR A 34 -34.97 -138.80
REMARK 500 ASP A 119 66.76 -158.25
REMARK 500 LEU A 180 77.53 -105.00
REMARK 500 ILE A 245 63.62 -105.56
REMARK 500 ASP A 259 124.92 -39.04
REMARK 500 TRP A 368 77.17 -107.27
REMARK 500 THR B 34 -35.37 -138.48
REMARK 500 ASP B 119 69.87 -160.15
REMARK 500 ILE B 245 62.06 -108.03
REMARK 500 ASP B 259 124.29 -36.83
REMARK 500 TRP B 368 76.56 -102.24
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue XBU A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GST A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue XBU B 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GST B 502
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5KCG RELATED DB: PDB
REMARK 900 RELATED ID: 5KCL RELATED DB: PDB
REMARK 900 RELATED ID: 5KCQ RELATED DB: PDB
REMARK 900 RELATED ID: 5KD0 RELATED DB: PDB
REMARK 900 RELATED ID: 5KD6 RELATED DB: PDB
REMARK 900 RELATED ID: 5KDA RELATED DB: PDB
DBREF 5KCY A 6 424 PDB 5KCY 5KCY 6 424
DBREF 5KCY B 6 424 PDB 5KCY 5KCY 6 424
SEQRES 1 A 419 GLY PRO LEU GLY SER ARG PRO TRP GLN ILE LEU SER GLN
SEQRES 2 A 419 ALA LEU GLY PHE PRO ASN TYR ASP GLN GLU LEU TRP TRP
SEQRES 3 A 419 GLN ASN THR ALA GLU THR LEU ASN ARG VAL LEU GLU GLN
SEQRES 4 A 419 CYS ASP TYR SER VAL HIS LEU GLN TYR LYS TYR LEU ALA
SEQRES 5 A 419 PHE TYR HIS LYS TYR ILE LEU PRO SER LEU GLY PRO PHE
SEQRES 6 A 419 ARG ARG PRO GLY VAL GLU PRO GLU TYR ILE SER GLY LEU
SEQRES 7 A 419 SER HIS GLY GLY HIS PRO LEU GLU ILE SER VAL LYS ILE
SEQRES 8 A 419 ASP LYS SER LYS THR ILE CYS ARG LEU GLY LEU GLN ALA
SEQRES 9 A 419 ILE GLY PRO LEU ALA GLY THR ALA ARG ASP PRO LEU ASN
SEQRES 10 A 419 SER PHE GLY ASP ARG GLU LEU LEU LYS ASN LEU ALA THR
SEQRES 11 A 419 LEU LEU PRO HIS VAL ASP LEU ARG LEU PHE ASP HIS PHE
SEQRES 12 A 419 ASN ALA GLN VAL GLY LEU ASP ARG ALA GLN CYS ALA VAL
SEQRES 13 A 419 ALA THR THR LYS LEU ILE LYS GLU SER HIS ASN ILE VAL
SEQRES 14 A 419 CYS THR SER LEU ASP LEU LYS ASP GLY GLU VAL ILE PRO
SEQRES 15 A 419 LYS VAL TYR PHE SER THR ILE PRO LYS GLY LEU VAL THR
SEQRES 16 A 419 GLU THR PRO LEU PHE ASP LEU THR PHE ALA ALA ILE GLU
SEQRES 17 A 419 GLN MET GLU VAL TYR HIS LYS ASP ALA PRO LEU ARG THR
SEQRES 18 A 419 ALA LEU SER SER LEU LYS ASP PHE LEU ARG PRO ARG VAL
SEQRES 19 A 419 PRO THR ASP ALA SER ILE THR PRO PRO LEU THR GLY LEU
SEQRES 20 A 419 ILE GLY VAL ASP CYS ILE ASP PRO MET LEU SER ARG LEU
SEQRES 21 A 419 LYS VAL TYR LEU ALA THR PHE ARG MET ASP LEU SER LEU
SEQRES 22 A 419 ILE ARG ASP TYR TRP THR LEU GLY GLY LEU LEU THR ASP
SEQRES 23 A 419 ALA GLY THR MET LYS GLY LEU GLU MET VAL GLU THR LEU
SEQRES 24 A 419 ALA LYS THR LEU LYS LEU GLY ASP GLU ALA CYS GLU THR
SEQRES 25 A 419 LEU ASP ALA GLU ARG LEU PRO PHE GLY ILE ASN TYR ALA
SEQRES 26 A 419 MET LYS PRO GLY THR ALA GLU LEU ALA PRO PRO GLN ILE
SEQRES 27 A 419 TYR PHE PRO LEU LEU GLY ILE ASN ASP GLY PHE ILE ALA
SEQRES 28 A 419 ASP ALA LEU VAL GLU PHE PHE GLN TYR MET GLY TRP GLU
SEQRES 29 A 419 ASP GLN ALA ASN ARG TYR LYS ASP GLU LEU LYS ALA LYS
SEQRES 30 A 419 PHE PRO ASN VAL ASP ILE SER GLN THR LYS ASN VAL HIS
SEQRES 31 A 419 ARG TRP LEU GLY VAL ALA TYR SER GLU THR LYS GLY PRO
SEQRES 32 A 419 SER MET ASN ILE TYR TYR ASP VAL VAL ALA GLY ASN VAL
SEQRES 33 A 419 ALA ARG VAL
SEQRES 1 B 419 GLY PRO LEU GLY SER ARG PRO TRP GLN ILE LEU SER GLN
SEQRES 2 B 419 ALA LEU GLY PHE PRO ASN TYR ASP GLN GLU LEU TRP TRP
SEQRES 3 B 419 GLN ASN THR ALA GLU THR LEU ASN ARG VAL LEU GLU GLN
SEQRES 4 B 419 CYS ASP TYR SER VAL HIS LEU GLN TYR LYS TYR LEU ALA
SEQRES 5 B 419 PHE TYR HIS LYS TYR ILE LEU PRO SER LEU GLY PRO PHE
SEQRES 6 B 419 ARG ARG PRO GLY VAL GLU PRO GLU TYR ILE SER GLY LEU
SEQRES 7 B 419 SER HIS GLY GLY HIS PRO LEU GLU ILE SER VAL LYS ILE
SEQRES 8 B 419 ASP LYS SER LYS THR ILE CYS ARG LEU GLY LEU GLN ALA
SEQRES 9 B 419 ILE GLY PRO LEU ALA GLY THR ALA ARG ASP PRO LEU ASN
SEQRES 10 B 419 SER PHE GLY ASP ARG GLU LEU LEU LYS ASN LEU ALA THR
SEQRES 11 B 419 LEU LEU PRO HIS VAL ASP LEU ARG LEU PHE ASP HIS PHE
SEQRES 12 B 419 ASN ALA GLN VAL GLY LEU ASP ARG ALA GLN CYS ALA VAL
SEQRES 13 B 419 ALA THR THR LYS LEU ILE LYS GLU SER HIS ASN ILE VAL
SEQRES 14 B 419 CYS THR SER LEU ASP LEU LYS ASP GLY GLU VAL ILE PRO
SEQRES 15 B 419 LYS VAL TYR PHE SER THR ILE PRO LYS GLY LEU VAL THR
SEQRES 16 B 419 GLU THR PRO LEU PHE ASP LEU THR PHE ALA ALA ILE GLU
SEQRES 17 B 419 GLN MET GLU VAL TYR HIS LYS ASP ALA PRO LEU ARG THR
SEQRES 18 B 419 ALA LEU SER SER LEU LYS ASP PHE LEU ARG PRO ARG VAL
SEQRES 19 B 419 PRO THR ASP ALA SER ILE THR PRO PRO LEU THR GLY LEU
SEQRES 20 B 419 ILE GLY VAL ASP CYS ILE ASP PRO MET LEU SER ARG LEU
SEQRES 21 B 419 LYS VAL TYR LEU ALA THR PHE ARG MET ASP LEU SER LEU
SEQRES 22 B 419 ILE ARG ASP TYR TRP THR LEU GLY GLY LEU LEU THR ASP
SEQRES 23 B 419 ALA GLY THR MET LYS GLY LEU GLU MET VAL GLU THR LEU
SEQRES 24 B 419 ALA LYS THR LEU LYS LEU GLY ASP GLU ALA CYS GLU THR
SEQRES 25 B 419 LEU ASP ALA GLU ARG LEU PRO PHE GLY ILE ASN TYR ALA
SEQRES 26 B 419 MET LYS PRO GLY THR ALA GLU LEU ALA PRO PRO GLN ILE
SEQRES 27 B 419 TYR PHE PRO LEU LEU GLY ILE ASN ASP GLY PHE ILE ALA
SEQRES 28 B 419 ASP ALA LEU VAL GLU PHE PHE GLN TYR MET GLY TRP GLU
SEQRES 29 B 419 ASP GLN ALA ASN ARG TYR LYS ASP GLU LEU LYS ALA LYS
SEQRES 30 B 419 PHE PRO ASN VAL ASP ILE SER GLN THR LYS ASN VAL HIS
SEQRES 31 B 419 ARG TRP LEU GLY VAL ALA TYR SER GLU THR LYS GLY PRO
SEQRES 32 B 419 SER MET ASN ILE TYR TYR ASP VAL VAL ALA GLY ASN VAL
SEQRES 33 B 419 ALA ARG VAL
HET XBU A 501 26
HET GST A 502 19
HET XBU B 501 26
HET GST B 502 19
HETNAM XBU METHYL (2~{R})-3-(4-HYDROXYPHENYL)-2-[(4-
HETNAM 2 XBU HYDROXYPHENYL)METHYL]-4-OXIDANYL-5-OXIDANYLIDENE-
HETNAM 3 XBU FURAN-2-CARBOXYLATE
HETNAM GST GERANYL S-THIOLODIPHOSPHATE
HETSYN GST S-[(2E)-3,7-DIMETHYLOCTA-2,6-DIENYL] TRIHYDROGEN
HETSYN 2 GST THIODIPHOSPHATE
FORMUL 3 XBU 2(C19 H16 O7)
FORMUL 4 GST 2(C10 H20 O6 P2 S)
FORMUL 7 HOH *81(H2 O)
HELIX 1 AA1 ARG A 11 GLY A 21 1 11
HELIX 2 AA2 ASN A 24 ASN A 33 1 10
HELIX 3 AA3 THR A 34 CYS A 45 1 12
HELIX 4 AA4 SER A 48 ILE A 63 1 16
HELIX 5 AA5 LEU A 64 LEU A 67 5 4
HELIX 6 AA6 PHE A 124 LEU A 137 1 14
HELIX 7 AA7 LEU A 142 GLY A 153 1 12
HELIX 8 AA8 ASP A 155 LYS A 165 1 11
HELIX 9 AA9 THR A 193 GLU A 201 1 9
HELIX 10 AB1 PRO A 203 GLN A 214 1 12
HELIX 11 AB2 MET A 215 ASP A 221 1 7
HELIX 12 AB3 ASP A 221 ARG A 236 1 16
HELIX 13 AB4 ASP A 275 LEU A 285 1 11
HELIX 14 AB5 ASP A 291 LEU A 308 1 18
HELIX 15 AB6 ASN A 351 MET A 366 1 16
HELIX 16 AB7 TRP A 368 PHE A 383 1 16
HELIX 17 AB8 PRO B 12 GLY B 21 1 10
HELIX 18 AB9 ASN B 24 ASN B 33 1 10
HELIX 19 AC1 THR B 34 CYS B 45 1 12
HELIX 20 AC2 SER B 48 ILE B 63 1 16
HELIX 21 AC3 LEU B 64 LEU B 67 5 4
HELIX 22 AC4 PHE B 124 LEU B 137 1 14
HELIX 23 AC5 LEU B 142 GLY B 153 1 12
HELIX 24 AC6 ASP B 155 LYS B 165 1 11
HELIX 25 AC7 THR B 193 GLU B 201 1 9
HELIX 26 AC8 PRO B 203 GLN B 214 1 12
HELIX 27 AC9 MET B 215 LYS B 220 1 6
HELIX 28 AD1 ASP B 221 ARG B 236 1 16
HELIX 29 AD2 ASP B 275 LEU B 285 1 11
HELIX 30 AD3 ASP B 291 LYS B 309 1 19
HELIX 31 AD4 ASN B 351 MET B 366 1 16
HELIX 32 AD5 TRP B 368 PHE B 383 1 16
SHEET 1 AA111 GLU A 91 ILE A 96 0
SHEET 2 AA111 THR A 101 LEU A 107 -1 O ILE A 102 N LYS A 95
SHEET 3 AA111 VAL A 174 LYS A 181 -1 O THR A 176 N LEU A 107
SHEET 4 AA111 GLU A 184 SER A 192 -1 O ILE A 186 N ASP A 179
SHEET 5 AA111 LEU A 249 ASP A 256 -1 O ILE A 253 N PHE A 191
SHEET 6 AA111 LEU A 265 THR A 271 -1 O LYS A 266 N GLY A 254
SHEET 7 AA111 PHE A 325 MET A 331 -1 O PHE A 325 N THR A 271
SHEET 8 AA111 GLN A 342 PRO A 346 -1 O TYR A 344 N GLY A 326
SHEET 9 AA111 HIS A 395 TYR A 402 -1 O LEU A 398 N PHE A 345
SHEET 10 AA111 PRO A 408 ASP A 415 -1 O TYR A 413 N ARG A 396
SHEET 11 AA111 GLU A 91 ILE A 96 -1 N ILE A 96 O MET A 410
SHEET 1 AA211 GLU B 91 ILE B 96 0
SHEET 2 AA211 THR B 101 LEU B 107 -1 O ILE B 102 N LYS B 95
SHEET 3 AA211 VAL B 174 LYS B 181 -1 O LEU B 178 N LEU B 105
SHEET 4 AA211 GLU B 184 SER B 192 -1 O ILE B 186 N ASP B 179
SHEET 5 AA211 LEU B 249 ASP B 256 -1 O ILE B 253 N PHE B 191
SHEET 6 AA211 LEU B 265 THR B 271 -1 O LYS B 266 N GLY B 254
SHEET 7 AA211 PHE B 325 MET B 331 -1 O PHE B 325 N THR B 271
SHEET 8 AA211 GLN B 342 PRO B 346 -1 O TYR B 344 N GLY B 326
SHEET 9 AA211 HIS B 395 TYR B 402 -1 O LEU B 398 N PHE B 345
SHEET 10 AA211 PRO B 408 ASP B 415 -1 O TYR B 413 N ARG B 396
SHEET 11 AA211 GLU B 91 ILE B 96 -1 N ILE B 96 O MET B 410
CISPEP 1 PRO A 247 PRO A 248 0 -12.49
CISPEP 2 PRO B 247 PRO B 248 0 -5.95
SITE 1 AC1 9 HIS A 88 GLU A 91 SER A 177 TYR A 190
SITE 2 AC1 9 LEU A 252 LEU A 323 ARG A 396 TRP A 397
SITE 3 AC1 9 GST A 502
SITE 1 AC2 13 LYS A 95 ARG A 104 TYR A 190 ARG A 264
SITE 2 AC2 13 LYS A 266 TYR A 268 PHE A 325 GLY A 326
SITE 3 AC2 13 ASN A 328 GLN A 342 TYR A 344 TYR A 413
SITE 4 AC2 13 XBU A 501
SITE 1 AC3 7 HIS B 88 GLU B 91 CYS B 175 SER B 177
SITE 2 AC3 7 ARG B 396 TRP B 397 GST B 502
SITE 1 AC4 14 LYS B 95 ARG B 104 LYS B 188 TYR B 190
SITE 2 AC4 14 ARG B 264 LYS B 266 TYR B 268 LEU B 269
SITE 3 AC4 14 GLY B 326 ASN B 328 GLN B 342 TYR B 344
SITE 4 AC4 14 TYR B 413 XBU B 501
CRYST1 96.950 134.910 68.690 90.00 90.00 90.00 P 21 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010315 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007412 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014558 0.00000