HEADER HYDROLASE 07-JUN-16 5KD5 TITLE BT_4244 METALLOPEPTIDASE FROM BACTEROIDES THETAIOTAOMICRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 322-857; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON (STRAIN ATCC 29148 SOURCE 3 / DSM 2079 / NCTC 10582 / E50 / VPI-5482); SOURCE 4 ORGANISM_TAXID: 226186; SOURCE 5 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 6 GENE: BT_4244; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS O-GLYCOPEPTIDASE, PF13402/M60-LIKE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.NOACH,A.B.BORASTON REVDAT 4 27-SEP-23 5KD5 1 REMARK REVDAT 3 08-FEB-17 5KD5 1 JRNL REVDAT 2 01-FEB-17 5KD5 1 JRNL REVDAT 1 11-JAN-17 5KD5 0 JRNL AUTH I.NOACH,E.FICKO-BLEAN,B.PLUVINAGE,C.STUART,M.L.JENKINS, JRNL AUTH 2 D.BROCHU,N.BUENBRAZO,W.WAKARCHUK,J.E.BURKE,M.GILBERT, JRNL AUTH 3 A.B.BORASTON JRNL TITL RECOGNITION OF PROTEIN-LINKED GLYCANS AS A DETERMINANT OF JRNL TITL 2 PEPTIDASE ACTIVITY. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E679 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28096352 JRNL DOI 10.1073/PNAS.1615141114 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 87249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4813 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6412 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 353 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 606 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.16000 REMARK 3 B22 (A**2) : -2.11000 REMARK 3 B33 (A**2) : -1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.412 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4516 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4129 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6109 ; 1.647 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9507 ; 0.872 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 542 ; 6.660 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;36.058 ;24.805 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 770 ;13.375 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.399 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 629 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5183 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1104 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2162 ; 2.016 ; 2.483 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2161 ; 2.013 ; 2.482 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2706 ; 2.691 ; 3.718 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2707 ; 2.692 ; 3.719 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2354 ; 2.699 ; 2.720 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2350 ; 2.697 ; 2.716 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3398 ; 4.009 ; 3.972 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5882 ; 5.765 ;21.668 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5561 ; 5.534 ;20.837 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92144 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 38.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5KD2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NAH2PO4, TRIS-HCL PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.43000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.51000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.22000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.51000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.43000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.22000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 299 REMARK 465 GLY A 300 REMARK 465 SER A 301 REMARK 465 SER A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 SER A 309 REMARK 465 SER A 310 REMARK 465 GLY A 311 REMARK 465 LEU A 312 REMARK 465 VAL A 313 REMARK 465 PRO A 314 REMARK 465 ARG A 315 REMARK 465 GLY A 316 REMARK 465 SER A 317 REMARK 465 HIS A 318 REMARK 465 MET A 319 REMARK 465 ALA A 320 REMARK 465 SER A 321 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 ASN A 842 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1140 O HOH A 1411 1.90 REMARK 500 O HOH A 1456 O HOH A 1469 1.92 REMARK 500 O HOH A 1109 O HOH A 1285 2.02 REMARK 500 O HOH A 1538 O HOH A 1546 2.03 REMARK 500 O HOH A 1131 O HOH A 1558 2.09 REMARK 500 OE2 GLU A 426 OG1 THR A 428 2.10 REMARK 500 O GLY A 442 O HOH A 1001 2.10 REMARK 500 O HOH A 1012 O HOH A 1033 2.17 REMARK 500 O HOH A 1274 O HOH A 1359 2.18 REMARK 500 O HOH A 1528 O HOH A 1544 2.18 REMARK 500 O HOH A 1540 O HOH A 1562 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 543 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 354 45.06 -90.88 REMARK 500 TRP A 386 -131.03 -134.49 REMARK 500 LEU A 441 135.36 -35.19 REMARK 500 LYS A 456 -33.97 67.58 REMARK 500 ASN A 526 14.64 -145.65 REMARK 500 SER A 537 -158.48 59.01 REMARK 500 TYR A 538 -79.78 -131.84 REMARK 500 TYR A 544 -35.17 79.46 REMARK 500 SER A 588 -17.68 102.29 REMARK 500 LYS A 662 95.69 -162.16 REMARK 500 ASP A 683 71.89 -171.11 REMARK 500 LEU A 703 32.92 -92.21 REMARK 500 ASN A 817 -56.02 74.33 REMARK 500 ASN A 842 -2.71 79.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 574 NE2 REMARK 620 2 HIS A 578 NE2 95.1 REMARK 620 3 GLU A 591 OE1 97.8 102.2 REMARK 620 4 EDO A 904 O1 96.2 100.5 152.1 REMARK 620 5 EDO A 904 O2 94.0 166.1 87.0 68.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 905 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KD2 RELATED DB: PDB REMARK 900 RELATED ID: 5KD8 RELATED DB: PDB REMARK 900 RELATED ID: 5KDJ RELATED DB: PDB REMARK 900 RELATED ID: 5KDN RELATED DB: PDB REMARK 900 RELATED ID: 5KDS RELATED DB: PDB REMARK 900 RELATED ID: 5KDU RELATED DB: PDB REMARK 900 RELATED ID: 5KDV RELATED DB: PDB REMARK 900 RELATED ID: 5KDW RELATED DB: PDB REMARK 900 RELATED ID: 5KDX RELATED DB: PDB DBREF 5KD5 A 322 857 UNP Q89ZX7 Q89ZX7_BACTN 322 857 SEQADV 5KD5 MET A 299 UNP Q89ZX7 INITIATING METHIONINE SEQADV 5KD5 GLY A 300 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 SER A 301 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 SER A 302 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 HIS A 303 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 HIS A 304 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 HIS A 305 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 HIS A 306 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 HIS A 307 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 HIS A 308 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 SER A 309 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 SER A 310 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 GLY A 311 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 LEU A 312 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 VAL A 313 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 PRO A 314 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 ARG A 315 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 GLY A 316 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 SER A 317 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 HIS A 318 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 MET A 319 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 ALA A 320 UNP Q89ZX7 EXPRESSION TAG SEQADV 5KD5 SER A 321 UNP Q89ZX7 EXPRESSION TAG SEQRES 1 A 559 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 559 LEU VAL PRO ARG GLY SER HIS MET ALA SER ASP LYS TRP SEQRES 3 A 559 GLU LYS GLU PHE ARG ILE ARG SER TYR GLU PRO TYR SER SEQRES 4 A 559 ASN ILE ALA GLU TRP ALA ASP LYS LEU MET THR LYS LYS SEQRES 5 A 559 TYR SER ASP LEU ASP ASN PRO THR GLY ILE SER VAL LYS SEQRES 6 A 559 ALA GLY ASP ASP ILE ILE VAL LEU VAL GLY ASP THR TYR SEQRES 7 A 559 GLY GLN ASN ILE SER MET GLN CYS ILE TRP GLU THR GLY SEQRES 8 A 559 THR GLU TYR LYS GLN THR ALA SER SER GLY ASP VAL TYR SEQRES 9 A 559 MET LEU ASN PRO GLY VAL ASN LYS LEU THR MET LYS GLY SEQRES 10 A 559 GLU GLY GLN LEU PHE VAL MET TYR ASN THR GLU LEU THR SEQRES 11 A 559 SER ASN THR ALA LYS PRO ILE LYS ILE HIS ILE PRO LEU SEQRES 12 A 559 GLY SER GLY THR VAL ASN GLY PHE PHE ASP LEU LYS GLU SEQRES 13 A 559 HIS LYS THR ASP GLU LYS TYR ALA GLU LEU LEU LYS LYS SEQRES 14 A 559 SER THR HIS LYS TYR PHE CYS ILE ARG GLY GLU LYS ILE SEQRES 15 A 559 MET PHE TYR PHE HIS ARG ASN LYS LEU LEU GLU TYR VAL SEQRES 16 A 559 PRO ASN ASN ILE LEU SER ALA ILE HIS LEU TRP ASP ASN SEQRES 17 A 559 ILE VAL GLY TRP GLN GLN GLU LEU MET GLY ILE ASP ASP SEQRES 18 A 559 VAL ARG PRO SER GLN VAL ASN ASN HIS LEU PHE ALA ILE SEQRES 19 A 559 SER PRO GLU GLY SER TYR MET TRP ALA SER ASP TYR GLN SEQRES 20 A 559 ILE GLY PHE VAL TYR THR TYR LEU GLY ASN ILE LEU LEU SEQRES 21 A 559 GLU ASP ASN VAL MET ALA ALA GLU ASP ASN ALA TRP GLY SEQRES 22 A 559 PRO ALA HIS GLU ILE GLY HIS VAL HIS GLN ALA ALA ILE SEQRES 23 A 559 ASN TRP ALA SER SER THR GLU SER SER ASN ASN LEU PHE SEQRES 24 A 559 SER ASN PHE ILE ILE TYR LYS LEU GLY LYS TYR LYS SER SEQRES 25 A 559 ARG GLY ASN GLY LEU GLY SER VAL ALA THR ALA ARG TYR SEQRES 26 A 559 ALA ASN GLY GLN ALA TRP TYR ASN MET GLY ASP ALA THR SEQRES 27 A 559 HIS GLN ASN GLU ASP THR GLU THR HIS MET ARG MET ASN SEQRES 28 A 559 TRP GLN LEU TRP ILE TYR TYR HIS ARG CYS GLU TYR LYS SEQRES 29 A 559 THR ASP PHE TRP GLN THR LEU PHE LYS LEU MET ARG GLU SEQRES 30 A 559 VAL ASN MET THR GLU GLY GLU ASP PRO GLY LYS LYS GLN SEQRES 31 A 559 LEU GLU PHE ALA LYS MET ALA SER LYS ALA ALA ASN GLN SEQRES 32 A 559 ASN LEU THR ASP PHE PHE GLU MET TRP GLY PHE PHE GLU SEQRES 33 A 559 PRO VAL ASN THR THR ILE GLU GLN TYR GLY THR TYR LYS SEQRES 34 A 559 TYR TYR VAL SER ASP ALA MET ILE ARG GLU ALA LYS GLU SEQRES 35 A 559 TYR MET ALA GLN PHE PRO ALA PRO LYS HIS ALA PHE GLN SEQRES 36 A 559 TYR ILE GLU ASP ARG LYS LYS SER GLU PHE PRO SER ASN SEQRES 37 A 559 ASP TYR ARG TYR SER ALA VAL GLY ASP VAL GLY TYR TYR SEQRES 38 A 559 THR GLN PHE LYS GLU ASN GLN LYS ILE THR LYS ALA ILE SEQRES 39 A 559 THR ALA GLU LEU ALA GLY ARG LYS VAL SER ILE GLN ASN SEQRES 40 A 559 GLY ASP GLU ALA VAL ALA PHE GLU LEU ARG GLU ASN ASP SEQRES 41 A 559 GLU ASN GLY LYS LEU LEU TYR PHE SER THR PHE THR THR SEQRES 42 A 559 PHE GLU ILE PRO SER SER ILE LEU MET VAL ASN ALA LYS SEQRES 43 A 559 LEU TYR ALA VAL GLN ALA ASP GLY LYS ARG ILE LEU LEU HET ZN A 901 1 HET EDO A 902 4 HET EDO A 903 4 HET EDO A 904 4 HET PO4 A 905 5 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 PO4 O4 P 3- FORMUL 7 HOH *606(H2 O) HELIX 1 AA1 ASP A 322 ARG A 329 1 8 HELIX 2 AA2 ASN A 338 MET A 347 1 10 HELIX 3 AA3 LEU A 452 LYS A 456 1 5 HELIX 4 AA4 THR A 457 SER A 468 1 12 HELIX 5 AA5 ARG A 486 VAL A 493 1 8 HELIX 6 AA6 ILE A 497 MET A 515 1 19 HELIX 7 AA7 TYR A 550 TYR A 552 5 3 HELIX 8 AA8 LEU A 553 LEU A 558 1 6 HELIX 9 AA9 LEU A 558 MET A 563 1 6 HELIX 10 AB1 ALA A 565 GLN A 581 1 17 HELIX 11 AB2 ALA A 582 ASN A 585 5 4 HELIX 12 AB3 ASN A 594 GLY A 606 1 13 HELIX 13 AB4 LEU A 615 TYR A 623 1 9 HELIX 14 AB5 ASP A 641 MET A 646 1 6 HELIX 15 AB6 MET A 646 HIS A 657 1 12 HELIX 16 AB7 ASP A 664 ASN A 677 1 14 HELIX 17 AB8 ASP A 683 ASN A 700 1 18 HELIX 18 AB9 LEU A 703 TRP A 710 1 8 HELIX 19 AC1 SER A 731 ALA A 743 1 13 HELIX 20 AC2 ALA A 751 ILE A 755 5 5 HELIX 21 AC3 LYS A 759 PHE A 763 5 5 HELIX 22 AC4 ASP A 767 VAL A 773 1 7 HELIX 23 AC5 TYR A 778 GLU A 784 1 7 SHEET 1 AA1 4 ILE A 330 TYR A 333 0 SHEET 2 AA1 4 ILE A 435 HIS A 438 -1 O ILE A 435 N TYR A 333 SHEET 3 AA1 4 ASP A 367 VAL A 372 -1 N LEU A 371 O HIS A 438 SHEET 4 AA1 4 GLY A 407 THR A 412 -1 O LEU A 411 N ILE A 368 SHEET 1 AA2 5 ASP A 400 LEU A 404 0 SHEET 2 AA2 5 ILE A 380 ILE A 385 -1 N MET A 382 O TYR A 402 SHEET 3 AA2 5 GLY A 417 MET A 422 -1 O MET A 422 N SER A 381 SHEET 4 AA2 5 PRO A 357 VAL A 362 -1 N ILE A 360 O LEU A 419 SHEET 5 AA2 5 THR A 445 VAL A 446 -1 O THR A 445 N SER A 361 SHEET 1 AA3 2 GLU A 387 THR A 388 0 SHEET 2 AA3 2 GLN A 394 THR A 395 -1 O GLN A 394 N THR A 388 SHEET 1 AA4 6 PHE A 450 ASP A 451 0 SHEET 2 AA4 6 TYR A 472 ARG A 476 1 O ARG A 476 N PHE A 450 SHEET 3 AA4 6 ILE A 480 HIS A 485 -1 O PHE A 482 N ILE A 475 SHEET 4 AA4 6 LEU A 529 ILE A 532 1 O ALA A 531 N MET A 481 SHEET 5 AA4 6 ILE A 546 PHE A 548 1 O ILE A 546 N ILE A 532 SHEET 6 AA4 6 MET A 539 ALA A 541 -1 N TRP A 540 O GLY A 547 SHEET 1 AA5 2 VAL A 716 GLU A 721 0 SHEET 2 AA5 2 THR A 725 VAL A 730 -1 O VAL A 730 N VAL A 716 SHEET 1 AA6 3 THR A 793 ALA A 797 0 SHEET 2 AA6 3 LYS A 800 GLN A 804 -1 O GLN A 804 N THR A 793 SHEET 3 AA6 3 THR A 831 GLU A 833 -1 O PHE A 832 N VAL A 801 SHEET 1 AA7 4 LEU A 823 SER A 827 0 SHEET 2 AA7 4 ALA A 811 GLU A 816 -1 N LEU A 814 O LEU A 824 SHEET 3 AA7 4 ALA A 843 VAL A 848 -1 O TYR A 846 N GLU A 813 SHEET 4 AA7 4 ARG A 854 LEU A 856 -1 O ILE A 855 N ALA A 847 LINK NE2 HIS A 574 ZN ZN A 901 1555 1555 2.14 LINK NE2 HIS A 578 ZN ZN A 901 1555 1555 2.07 LINK OE1 GLU A 591 ZN ZN A 901 1555 1555 2.00 LINK ZN ZN A 901 O1 EDO A 904 1555 1555 2.35 LINK ZN ZN A 901 O2 EDO A 904 1555 1555 2.26 CISPEP 1 ARG A 521 PRO A 522 0 7.30 SITE 1 AC1 4 HIS A 574 HIS A 578 GLU A 591 EDO A 904 SITE 1 AC2 5 GLY A 606 LYS A 607 TYR A 608 LYS A 609 SITE 2 AC2 5 HOH A1186 SITE 1 AC3 4 ASN A 613 TYR A 768 HOH A1149 HOH A1370 SITE 1 AC4 5 HIS A 574 GLU A 575 HIS A 578 GLU A 591 SITE 2 AC4 5 ZN A 901 SITE 1 AC5 4 LYS A 787 GLN A 849 ASP A 851 LYS A 853 CRYST1 86.860 88.440 99.020 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010099 0.00000