HEADER OXYGEN TRANSPORT 08-JUN-16 5KDQ
TITLE DEOXYHEMOGLOBIN IN COMPLEX WITH AN ARYLOXYALKANOIC ACID
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA;
COMPND 3 CHAIN: A, C;
COMPND 4 SYNONYM: ALPHA-GLOBIN,HEMOGLOBIN ALPHA CHAIN;
COMPND 5 ENGINEERED: YES;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: HEMOGLOBIN SUBUNIT BETA;
COMPND 8 CHAIN: B, D;
COMPND 9 SYNONYM: BETA-GLOBIN,HEMOGLOBIN BETA CHAIN;
COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HBA1, HBA2;
SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606;
SOURCE 8 MOL_ID: 2;
SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 10 ORGANISM_COMMON: HUMAN;
SOURCE 11 ORGANISM_TAXID: 9606;
SOURCE 12 GENE: HBB;
SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606
KEYWDS HEMOGLOBIN, SICKLE CELL DISEASE, ALLOSTERIC EFFECTOR,
KEYWDS 2 ARYLOXYALKANOIC, OXYGEN TRANSPORT
EXPDTA X-RAY DIFFRACTION
AUTHOR M.H.AHMED,A.M.OMAR,M.K.SAFO
REVDAT 5 27-SEP-23 5KDQ 1 REMARK
REVDAT 4 04-DEC-19 5KDQ 1 REMARK
REVDAT 3 20-SEP-17 5KDQ 1 REMARK
REVDAT 2 31-AUG-16 5KDQ 1 JRNL
REVDAT 1 22-JUN-16 5KDQ 0
JRNL AUTH A.M.OMAR,M.A.MAHRAN,M.S.GHATGE,F.H.BAMANE,M.H.AHMED,
JRNL AUTH 2 M.E.EL-ARABY,O.ABDULMALIK,M.K.SAFO
JRNL TITL ARYLOXYALKANOIC ACIDS AS NON-COVALENT MODIFIERS OF THE
JRNL TITL 2 ALLOSTERIC PROPERTIES OF HEMOGLOBIN.
JRNL REF MOLECULES V. 21 2016
JRNL REFN ESSN 1420-3049
JRNL PMID 27529207
JRNL DOI 10.3390/MOLECULES21081057
REMARK 2
REMARK 2 RESOLUTION. 2.15 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.6.4_486
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1
REMARK 3 NUMBER OF REFLECTIONS : 27358
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.196
REMARK 3 R VALUE (WORKING SET) : 0.192
REMARK 3 FREE R VALUE : 0.257
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080
REMARK 3 FREE R VALUE TEST SET COUNT : 1389
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 29.6428 - 4.6268 0.98 2711 152 0.1738 0.2382
REMARK 3 2 4.6268 - 3.6746 0.98 2639 161 0.1541 0.1953
REMARK 3 3 3.6746 - 3.2108 0.97 2642 153 0.1846 0.2364
REMARK 3 4 3.2108 - 2.9175 0.97 2597 138 0.2107 0.2693
REMARK 3 5 2.9175 - 2.7085 0.96 2621 120 0.2098 0.3151
REMARK 3 6 2.7085 - 2.5489 0.96 2590 124 0.2164 0.2825
REMARK 3 7 2.5489 - 2.4213 0.95 2573 119 0.2120 0.3121
REMARK 3 8 2.4213 - 2.3160 0.95 2525 156 0.2285 0.3056
REMARK 3 9 2.3160 - 2.2268 0.94 2550 130 0.2368 0.3447
REMARK 3 10 2.2268 - 2.1500 0.94 2521 136 0.2473 0.3569
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.00
REMARK 3 SHRINKAGE RADIUS : 0.72
REMARK 3 K_SOL : 0.35
REMARK 3 B_SOL : 43.07
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.550
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -6.44490
REMARK 3 B22 (A**2) : 10.49250
REMARK 3 B33 (A**2) : -4.04760
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -2.81520
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 4731
REMARK 3 ANGLE : 1.284 6491
REMARK 3 CHIRALITY : 0.065 700
REMARK 3 PLANARITY : 0.005 809
REMARK 3 DIHEDRAL : 14.235 1606
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5KDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-16.
REMARK 100 THE DEPOSITION ID IS D_1000222064.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-MAY-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : CU FINE FOCUS
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.54
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK
REMARK 200 DATA SCALING SOFTWARE : D*TREK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27383
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150
REMARK 200 RESOLUTION RANGE LOW (A) : 29.640
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2
REMARK 200 DATA REDUNDANCY : 6.750
REMARK 200 R MERGE (I) : 0.06400
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23
REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1
REMARK 200 DATA REDUNDANCY IN SHELL : 6.73
REMARK 200 R MERGE FOR SHELL (I) : 0.14600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.400
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS
REMARK 200 SOFTWARE USED: PHENIX 1.6.4_486
REMARK 200 STARTING MODEL: 2DN2
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42.39
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2 M SULFATE/PHOSPHATE PRECIPITANT,
REMARK 280 PH 6.8, LIQUID DIFFUSION, PH 6.5, TEMPERATURE 298.0K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.41500
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 12040 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 23060 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH C 403 O HOH C 406 1.83
REMARK 500 N LEU D 3 O HOH D 301 1.98
REMARK 500 O HOH A 367 O HOH A 369 2.00
REMARK 500 O HOH D 341 O HOH D 357 2.02
REMARK 500 O HOH A 363 O HOH A 379 2.03
REMARK 500 OXT HIS B 146 O HOH B 301 2.04
REMARK 500 OD1 ASP A 64 O HOH A 301 2.05
REMARK 500 O HOH A 374 O HOH A 385 2.07
REMARK 500 O HOH A 339 O HOH A 394 2.07
REMARK 500 O HOH A 340 O HOH B 323 2.15
REMARK 500 O HOH D 374 O HOH D 391 2.16
REMARK 500 O HOH A 393 O HOH A 395 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH B 333 O HOH C 340 2556 2.11
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 113 61.84 -119.66
REMARK 500 HIS B 2 64.51 68.11
REMARK 500 LEU B 48 22.45 -145.33
REMARK 500 ASP B 79 -89.37 -58.98
REMARK 500 VAL C 73 -7.60 -57.64
REMARK 500 LYS C 90 -64.81 -125.50
REMARK 500 HIS D 2 115.88 -172.75
REMARK 500 LEU D 3 107.15 74.82
REMARK 500 ALA D 53 -52.07 102.25
REMARK 500 ASN D 80 48.50 -140.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH C 406 DISTANCE = 6.51 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEM A 201 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 87 NE2
REMARK 620 2 HEM A 201 NA 94.5
REMARK 620 3 HEM A 201 NB 98.4 88.0
REMARK 620 4 HEM A 201 NC 106.6 158.9 89.3
REMARK 620 5 HEM A 201 ND 104.4 90.1 157.3 84.3
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEM B 201 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS B 92 NE2
REMARK 620 2 HEM B 201 NA 89.2
REMARK 620 3 HEM B 201 NB 100.0 84.4
REMARK 620 4 HEM B 201 NC 109.3 161.5 91.2
REMARK 620 5 HEM B 201 ND 98.2 88.9 160.4 89.4
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEM C 201 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS C 87 NE2
REMARK 620 2 HEM C 201 NA 89.7
REMARK 620 3 HEM C 201 NB 94.0 81.4
REMARK 620 4 HEM C 201 NC 108.1 161.8 93.1
REMARK 620 5 HEM C 201 ND 103.8 92.9 161.4 86.8
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEM D 201 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS D 92 NE2
REMARK 620 2 HEM D 201 NA 100.7
REMARK 620 3 HEM D 201 NB 102.0 88.7
REMARK 620 4 HEM D 201 NC 95.9 163.4 88.3
REMARK 620 5 HEM D 201 ND 97.0 87.7 161.0 89.8
REMARK 620 N 1 2 3 4
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue HEM C 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue KOH C 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue HEM D 201
DBREF 5KDQ A 1 141 UNP P69905 HBA_HUMAN 2 142
DBREF 5KDQ B 1 146 UNP P68871 HBB_HUMAN 2 147
DBREF 5KDQ C 1 141 UNP P69905 HBA_HUMAN 2 142
DBREF 5KDQ D 1 146 UNP P68871 HBB_HUMAN 2 147
SEQRES 1 A 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA
SEQRES 2 A 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA
SEQRES 3 A 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR
SEQRES 4 A 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER
SEQRES 5 A 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA
SEQRES 6 A 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN
SEQRES 7 A 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU
SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS
SEQRES 9 A 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE
SEQRES 10 A 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA
SEQRES 11 A 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG
SEQRES 1 B 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA
SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU
SEQRES 3 B 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN
SEQRES 4 B 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP
SEQRES 5 B 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS
SEQRES 6 B 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU
SEQRES 7 B 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU
SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG
SEQRES 9 B 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS
SEQRES 10 B 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR
SEQRES 11 B 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS
SEQRES 12 B 146 LYS TYR HIS
SEQRES 1 C 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA
SEQRES 2 C 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA
SEQRES 3 C 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR
SEQRES 4 C 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER
SEQRES 5 C 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA
SEQRES 6 C 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN
SEQRES 7 C 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU
SEQRES 8 C 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS
SEQRES 9 C 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE
SEQRES 10 C 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA
SEQRES 11 C 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG
SEQRES 1 D 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA
SEQRES 2 D 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU
SEQRES 3 D 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN
SEQRES 4 D 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP
SEQRES 5 D 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS
SEQRES 6 D 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU
SEQRES 7 D 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU
SEQRES 8 D 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG
SEQRES 9 D 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS
SEQRES 10 D 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR
SEQRES 11 D 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS
SEQRES 12 D 146 LYS TYR HIS
HET HEM A 201 43
HET PO4 A 202 5
HET PO4 A 203 5
HET HEM B 201 43
HET HEM C 201 43
HET KOH C 202 18
HET HEM D 201 43
HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE
HETNAM PO4 PHOSPHATE ION
HETNAM KOH 3-[2-CHLORANYL-4-(1~{H}-IMIDAZOL-2-YL)PHENOXY]PROPANOIC
HETNAM 2 KOH ACID
HETSYN HEM HEME
FORMUL 5 HEM 4(C34 H32 FE N4 O4)
FORMUL 6 PO4 2(O4 P 3-)
FORMUL 10 KOH C12 H11 CL N2 O3
FORMUL 12 HOH *370(H2 O)
HELIX 1 AA1 SER A 3 GLY A 18 1 16
HELIX 2 AA2 HIS A 20 PHE A 36 1 17
HELIX 3 AA3 PRO A 37 PHE A 43 5 7
HELIX 4 AA4 SER A 52 HIS A 72 1 21
HELIX 5 AA5 ASP A 75 LEU A 80 1 6
HELIX 6 AA6 LEU A 80 LYS A 90 1 11
HELIX 7 AA7 PRO A 95 LEU A 113 1 19
HELIX 8 AA8 THR A 118 SER A 138 1 21
HELIX 9 AA9 THR B 4 GLY B 16 1 13
HELIX 10 AB1 ASN B 19 TYR B 35 1 17
HELIX 11 AB2 PRO B 36 PHE B 42 5 7
HELIX 12 AB3 THR B 50 ASN B 57 1 8
HELIX 13 AB4 ASN B 57 LEU B 75 1 19
HELIX 14 AB5 ALA B 76 LEU B 78 5 3
HELIX 15 AB6 ASN B 80 LYS B 95 1 16
HELIX 16 AB7 PRO B 100 GLY B 119 1 20
HELIX 17 AB8 LYS B 120 PHE B 122 5 3
HELIX 18 AB9 THR B 123 HIS B 143 1 21
HELIX 19 AC1 SER C 3 GLY C 18 1 16
HELIX 20 AC2 HIS C 20 PHE C 36 1 17
HELIX 21 AC3 PRO C 37 PHE C 43 5 7
HELIX 22 AC4 SER C 52 HIS C 72 1 21
HELIX 23 AC5 ASP C 75 LEU C 80 1 6
HELIX 24 AC6 LEU C 80 LYS C 90 1 11
HELIX 25 AC7 PRO C 95 LEU C 113 1 19
HELIX 26 AC8 THR C 118 SER C 138 1 21
HELIX 27 AC9 THR D 4 GLY D 16 1 13
HELIX 28 AD1 ASN D 19 TYR D 35 1 17
HELIX 29 AD2 PRO D 36 GLY D 46 5 11
HELIX 30 AD3 THR D 50 MET D 55 1 6
HELIX 31 AD4 ASN D 57 LEU D 75 1 19
HELIX 32 AD5 ALA D 76 LEU D 78 5 3
HELIX 33 AD6 ASN D 80 LYS D 95 1 16
HELIX 34 AD7 PRO D 100 GLY D 119 1 20
HELIX 35 AD8 LYS D 120 PHE D 122 5 3
HELIX 36 AD9 THR D 123 HIS D 143 1 21
LINK NE2 HIS A 87 FE HEM A 201 1555 1555 2.18
LINK NE2 HIS B 92 FE HEM B 201 1555 1555 2.18
LINK NE2 HIS C 87 FE HEM C 201 1555 1555 2.21
LINK NE2 HIS D 92 FE HEM D 201 1555 1555 2.18
SITE 1 AC1 19 TYR A 42 PHE A 43 HIS A 45 PHE A 46
SITE 2 AC1 19 HIS A 58 LYS A 61 LEU A 83 LEU A 86
SITE 3 AC1 19 HIS A 87 LEU A 91 VAL A 93 ASN A 97
SITE 4 AC1 19 PHE A 98 LEU A 136 HOH A 302 HOH A 326
SITE 5 AC1 19 HOH A 331 HOH A 347 HOH A 350
SITE 1 AC2 6 LYS A 16 HOH A 310 HOH A 317 HOH A 345
SITE 2 AC2 6 HIS D 116 HIS D 117
SITE 1 AC3 3 SER A 81 ASP A 85 LYS A 139
SITE 1 AC4 15 SER A 52 ALA A 53 PHE B 41 PHE B 42
SITE 2 AC4 15 HIS B 63 VAL B 67 ALA B 70 PHE B 71
SITE 3 AC4 15 LEU B 91 HIS B 92 LEU B 96 ASN B 102
SITE 4 AC4 15 PHE B 103 LEU B 106 HOH B 305
SITE 1 AC5 15 TYR C 42 PHE C 43 HIS C 45 HIS C 58
SITE 2 AC5 15 LYS C 61 LEU C 83 LEU C 86 HIS C 87
SITE 3 AC5 15 LEU C 91 VAL C 93 ASN C 97 PHE C 98
SITE 4 AC5 15 LEU C 101 LEU C 136 HOH C 327
SITE 1 AC6 10 PRO A 95 THR A 137 SER A 138 TYR A 140
SITE 2 AC6 10 ARG A 141 LEU C 2 LYS C 127 ALA C 130
SITE 3 AC6 10 SER C 131 HOH C 312
SITE 1 AC7 9 PHE D 41 HIS D 63 LYS D 66 VAL D 67
SITE 2 AC7 9 HIS D 92 LEU D 96 ASN D 102 PHE D 103
SITE 3 AC7 9 LEU D 141
CRYST1 62.222 80.830 53.397 90.00 80.77 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016071 0.000000 -0.002610 0.00000
SCALE2 0.000000 0.012372 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018973 0.00000