HEADER UNKNOWN FUNCTION 10-JUN-16 5KES TITLE SOLUTION STRUCTURE OF THE YEAST DDI1 HDD DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DAMAGE-INDUCIBLE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 86-196; COMPND 5 SYNONYM: V-SNARE-MASTER 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: DDI1, VSM1, YER143W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS HELICAL BUNDLES, DNA REPAIR, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.-F.TREMPE,C.RATCLIFFE,V.VEVERKA,K.SASKOVA,K.GEHRING REVDAT 5 15-MAY-24 5KES 1 REMARK REVDAT 4 14-JUN-23 5KES 1 REMARK REVDAT 3 08-JAN-20 5KES 1 REMARK REVDAT 2 20-SEP-17 5KES 1 COMPND REVDAT 1 05-OCT-16 5KES 0 JRNL AUTH J.F.TREMPE,K.G.SASKOVA,M.SIVA,C.D.RATCLIFFE,V.VEVERKA, JRNL AUTH 2 A.HOEGL,M.MENADE,X.FENG,S.SHENKER,M.SVOBODA,M.KOZISEK, JRNL AUTH 3 J.KONVALINKA,K.GEHRING JRNL TITL STRUCTURAL STUDIES OF THE YEAST DNA DAMAGE-INDUCIBLE PROTEIN JRNL TITL 2 DDI1 REVEAL DOMAIN ARCHITECTURE OF THIS EUKARYOTIC PROTEIN JRNL TITL 3 FAMILY. JRNL REF SCI REP V. 6 33671 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27646017 JRNL DOI 10.1038/SREP33671 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.40 REMARK 3 AUTHORS : C.D. SCHWIETERS, J.J. KUSZEWSKI, N. TJANDRA, AND REMARK 3 G.M. CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000219248. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 110; 110 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] DDI1 86 REMARK 210 -196, 90% H2O/10% D2O; 0.5 MM [U- REMARK 210 15N] DDI1 86-196, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HET NOE; 2D 1H-15N REMARK 210 HSQC-IPAP; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 15N/1H NOESY-HSQC; 3D REMARK 210 13C/1H HSQC-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR-NIH 2.40, SPARKY, TALOS, REMARK 210 CYANA, MODULE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 85 35.09 -165.62 REMARK 500 1 THR A 87 35.66 -173.07 REMARK 500 1 SER A 89 -171.72 -59.72 REMARK 500 1 ALA A 147 35.32 -168.15 REMARK 500 1 PRO A 154 127.53 -38.19 REMARK 500 1 ASN A 164 68.29 -163.32 REMARK 500 1 ALA A 190 88.00 44.64 REMARK 500 1 ILE A 191 2.77 -66.43 REMARK 500 1 TYR A 193 35.94 -80.70 REMARK 500 1 THR A 194 75.18 -153.56 REMARK 500 2 LEU A 83 178.13 -48.09 REMARK 500 2 SER A 85 105.98 -165.31 REMARK 500 2 THR A 87 80.44 -166.32 REMARK 500 2 SER A 89 179.38 -55.48 REMARK 500 2 PRO A 134 -25.06 -38.84 REMARK 500 2 TYR A 144 22.95 40.65 REMARK 500 2 THR A 146 -103.96 -164.38 REMARK 500 2 PRO A 150 -25.35 -37.87 REMARK 500 2 PRO A 154 125.42 -37.75 REMARK 500 2 ASN A 164 69.97 -162.09 REMARK 500 2 ALA A 190 -90.70 40.11 REMARK 500 2 GLU A 192 -167.06 54.55 REMARK 500 2 TYR A 193 79.07 -160.88 REMARK 500 2 THR A 194 61.71 -167.05 REMARK 500 3 PRO A 82 -176.00 -48.87 REMARK 500 3 ALA A 86 -7.77 -163.26 REMARK 500 3 THR A 87 37.70 -76.61 REMARK 500 3 LEU A 88 96.74 -68.83 REMARK 500 3 SER A 89 -179.48 -57.70 REMARK 500 3 TYR A 144 91.74 -53.48 REMARK 500 3 ALA A 147 -4.29 -167.55 REMARK 500 3 MET A 148 104.72 53.57 REMARK 500 3 PRO A 154 123.15 -38.17 REMARK 500 3 ASN A 164 65.37 -160.62 REMARK 500 3 ALA A 190 -168.57 -53.95 REMARK 500 3 ILE A 191 104.56 53.76 REMARK 500 3 GLU A 192 102.96 51.82 REMARK 500 3 TYR A 193 -21.79 -160.06 REMARK 500 4 PRO A 82 -174.37 -48.20 REMARK 500 4 LEU A 83 4.91 -165.86 REMARK 500 4 ASN A 145 98.18 -160.99 REMARK 500 4 ALA A 147 -51.08 -170.10 REMARK 500 4 MET A 148 -7.09 65.33 REMARK 500 4 ASN A 149 85.69 46.82 REMARK 500 4 PRO A 154 127.33 -37.34 REMARK 500 4 ASN A 164 71.15 -160.71 REMARK 500 4 ALA A 190 170.35 55.08 REMARK 500 4 ILE A 191 98.21 47.62 REMARK 500 5 SER A 85 103.72 52.82 REMARK 500 5 ALA A 86 77.49 59.92 REMARK 500 REMARK 500 THIS ENTRY HAS 228 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30102 RELATED DB: BMRB DBREF 5KES A 86 196 UNP P40087 DDI1_YEAST 86 196 SEQADV 5KES GLY A 81 UNP P40087 EXPRESSION TAG SEQADV 5KES PRO A 82 UNP P40087 EXPRESSION TAG SEQADV 5KES LEU A 83 UNP P40087 EXPRESSION TAG SEQADV 5KES GLY A 84 UNP P40087 EXPRESSION TAG SEQADV 5KES SER A 85 UNP P40087 EXPRESSION TAG SEQRES 1 A 116 GLY PRO LEU GLY SER ALA THR LEU SER ASP GLU ALA PHE SEQRES 2 A 116 ILE GLU GLN PHE ARG GLN GLU LEU LEU ASN ASN GLN MET SEQRES 3 A 116 LEU ARG SER GLN LEU ILE LEU GLN ILE PRO GLY LEU ASN SEQRES 4 A 116 ASP LEU VAL ASN ASP PRO LEU LEU PHE ARG GLU ARG LEU SEQRES 5 A 116 GLY PRO LEU ILE LEU GLN ARG ARG TYR GLY GLY TYR ASN SEQRES 6 A 116 THR ALA MET ASN PRO PHE GLY ILE PRO GLN ASP GLU TYR SEQRES 7 A 116 THR ARG LEU MET ALA ASN PRO ASP ASP PRO ASP ASN LYS SEQRES 8 A 116 LYS ARG ILE ALA GLU LEU LEU ASP GLN GLN ALA ILE ASP SEQRES 9 A 116 GLU GLN LEU ARG ASN ALA ILE GLU TYR THR PRO GLU HELIX 1 AA1 SER A 89 ASN A 104 1 16 HELIX 2 AA2 ASN A 104 LEU A 113 1 10 HELIX 3 AA3 GLY A 117 ASN A 123 1 7 HELIX 4 AA4 ASP A 124 LEU A 132 1 9 HELIX 5 AA5 LEU A 132 TYR A 141 1 10 HELIX 6 AA6 PRO A 154 ASN A 164 1 11 HELIX 7 AA7 ASP A 167 ALA A 190 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1