HEADER TRANSFERASE 14-JUN-16 5KH6 TITLE SETDB1 IN COMPLEX WITH A FRAGMENT CANDIDATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETDB1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TUDOR DOMAIN; COMPND 5 SYNONYM: ERG-ASSOCIATED PROTEIN WITH SET DOMAIN,ESET,HISTONE H3-K9 COMPND 6 METHYLTRANSFERASE 4,H3-K9-HMTASE 4,LYSINE N-METHYLTRANSFERASE 1E,SET COMPND 7 DOMAIN BIFURCATED 1; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETDB1, KIAA0067, KMT1E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS FRAGMENT SCREENING, STRUCTURAL GENOMICS CONSORTIUM, SGC, DIAMOND I04- KEYWDS 2 1 XCHEM, PANDDA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,R.J.HARDING,P.MADER,E.DOBROVETSKY,A.DONG,P.COLLINS, AUTHOR 2 N.PEARCE,J.BRANDAO-NETO,A.DOUANGAMATH,F.VON DELFT,P.J.BROWN, AUTHOR 3 M.SCHAPIRA,C.H.ARROWSMITH,A.M.EDWARDS,V.SANTHAKUMAR,STRUCTURAL AUTHOR 4 GENOMICS CONSORTIUM (SGC) REVDAT 3 03-APR-24 5KH6 1 REMARK REVDAT 2 06-MAR-24 5KH6 1 REMARK REVDAT 1 21-SEP-16 5KH6 0 JRNL AUTH J.R.WALKER,R.J.HARDING,P.MADER,E.DOBROVETSKY,A.DONG, JRNL AUTH 2 P.COLLINS,N.PEARCE,J.BRANDAO-NETO,A.DOUANGAMATH,F.VON DELFT, JRNL AUTH 3 P.J.BROWN,M.SCHAPIRA,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 4 V.SANTHAKUMAR,STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL SETDB1 IN COMPLEX WITH A FRAGMENT CANDIDATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.080 REMARK 3 FREE R VALUE TEST SET COUNT : 501 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2901 REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2812 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.07 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 89 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1713 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.85100 REMARK 3 B22 (A**2) : 11.78490 REMARK 3 B33 (A**2) : -5.93390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.198 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.175 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.502 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.169 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3677 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6603 ; 4.000 ; HARMONIC REMARK 3 TORSION ANGLES : 815 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 36 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 529 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3677 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 227 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3634 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.72 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.57 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.28 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|190 - 248 } REMARK 3 ORIGIN FOR THE GROUP (A): 40.1508 69.2421 -3.0795 REMARK 3 T TENSOR REMARK 3 T11: -0.0615 T22: 0.0803 REMARK 3 T33: -0.0602 T12: 0.0159 REMARK 3 T13: 0.0341 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.2111 L22: 4.5259 REMARK 3 L33: 1.6131 L12: 2.1972 REMARK 3 L13: -0.6483 L23: -0.6968 REMARK 3 S TENSOR REMARK 3 S11: -0.1568 S12: 0.1128 S13: -0.1555 REMARK 3 S21: -0.2982 S22: 0.0508 S23: -0.2727 REMARK 3 S31: 0.1497 S32: 0.0837 S33: 0.1060 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|249 - 345 } REMARK 3 ORIGIN FOR THE GROUP (A): 22.8938 67.1291 9.1986 REMARK 3 T TENSOR REMARK 3 T11: -0.0935 T22: 0.0170 REMARK 3 T33: -0.1162 T12: 0.0127 REMARK 3 T13: -0.0053 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.0894 L22: 1.1405 REMARK 3 L33: 1.9442 L12: 0.4485 REMARK 3 L13: -0.3170 L23: -0.8452 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0999 S13: 0.0360 REMARK 3 S21: 0.0472 S22: -0.0053 S23: 0.0394 REMARK 3 S31: 0.0731 S32: -0.0469 S33: 0.0044 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|346 - 400 } REMARK 3 ORIGIN FOR THE GROUP (A): 10.1805 51.8900 15.8939 REMARK 3 T TENSOR REMARK 3 T11: -0.0460 T22: 0.0948 REMARK 3 T33: -0.0848 T12: -0.0105 REMARK 3 T13: -0.0112 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.5765 L22: 5.5004 REMARK 3 L33: 4.0659 L12: 0.0665 REMARK 3 L13: 0.5943 L23: -0.0666 REMARK 3 S TENSOR REMARK 3 S11: 0.1039 S12: 0.0463 S13: -0.1029 REMARK 3 S21: -0.3685 S22: 0.0588 S23: 0.1917 REMARK 3 S31: 0.2135 S32: 0.1209 S33: -0.1627 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOXDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21344 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 27.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: ISOMORPHOUS CRYSTAL STUCTURE OF SETDB1 IN COMPLEX REMARK 200 WITH A DIFFERENT FRAGMENT CANDIDATE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG-3350, 0.2M LITHIUM SULFATE, REMARK 280 0.1M BIS-TRIS. TRYPSIN HAD BEEN ADDED TO THE PROTEIN STOCK REMARK 280 SOLUTION., PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.15500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.15500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.90500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 215 CE NZ REMARK 470 LYS A 233 NZ REMARK 470 ASN A 236 CB CG OD1 ND2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 267 CD CE NZ REMARK 470 LYS A 269 CE NZ REMARK 470 LYS A 288 CE NZ REMARK 470 GLU A 325 CD OE1 OE2 REMARK 470 ILE A 327 CD1 REMARK 470 LYS A 355 CE NZ REMARK 470 LYS A 364 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 201 -6.60 90.67 REMARK 500 SER A 201 -4.73 90.67 REMARK 500 ASP A 250 52.74 -94.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6SU A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 520 DBREF 5KH6 A 196 400 UNP Q15047 SETB1_HUMAN 196 400 SEQADV 5KH6 GLU A 190 UNP Q15047 EXPRESSION TAG SEQADV 5KH6 ASN A 191 UNP Q15047 EXPRESSION TAG SEQADV 5KH6 LEU A 192 UNP Q15047 EXPRESSION TAG SEQADV 5KH6 TYR A 193 UNP Q15047 EXPRESSION TAG SEQADV 5KH6 PHE A 194 UNP Q15047 EXPRESSION TAG SEQADV 5KH6 GLN A 195 UNP Q15047 EXPRESSION TAG SEQRES 1 A 211 GLU ASN LEU TYR PHE GLN GLY ASP LEU ILE VAL SER MET SEQRES 2 A 211 ARG ILE LEU GLY LYS LYS ARG THR LYS THR TRP HIS LYS SEQRES 3 A 211 GLY THR LEU ILE ALA ILE GLN THR VAL GLY PRO GLY LYS SEQRES 4 A 211 LYS TYR LYS VAL LYS PHE ASP ASN LYS GLY LYS SER LEU SEQRES 5 A 211 LEU SER GLY ASN HIS ILE ALA TYR ASP TYR HIS PRO PRO SEQRES 6 A 211 ALA ASP LYS LEU TYR VAL GLY SER ARG VAL VAL ALA LYS SEQRES 7 A 211 TYR LYS ASP GLY ASN GLN VAL TRP LEU TYR ALA GLY ILE SEQRES 8 A 211 VAL ALA GLU THR PRO ASN VAL LYS ASN LYS LEU ARG PHE SEQRES 9 A 211 LEU ILE PHE PHE ASP ASP GLY TYR ALA SER TYR VAL THR SEQRES 10 A 211 GLN SER GLU LEU TYR PRO ILE CYS ARG PRO LEU LYS LYS SEQRES 11 A 211 THR TRP GLU ASP ILE GLU ASP ILE SER CYS ARG ASP PHE SEQRES 12 A 211 ILE GLU GLU TYR VAL THR ALA TYR PRO ASN ARG PRO MET SEQRES 13 A 211 VAL LEU LEU LYS SER GLY GLN LEU ILE LYS THR GLU TRP SEQRES 14 A 211 GLU GLY THR TRP TRP LYS SER ARG VAL GLU GLU VAL ASP SEQRES 15 A 211 GLY SER LEU VAL ARG ILE LEU PHE LEU ASP ASP LYS ARG SEQRES 16 A 211 CYS GLU TRP ILE TYR ARG GLY SER THR ARG LEU GLU PRO SEQRES 17 A 211 MET PHE SER HET EDO A 501 4 HET DMS A 502 4 HET EDO A 503 4 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET CL A 509 1 HET CL A 510 1 HET CL A 511 1 HET CL A 512 1 HET 6SU A 513 15 HET EDO A 514 4 HET PEG A 515 7 HET PEG A 516 7 HET PEG A 517 7 HET ACT A 518 4 HET EDO A 519 4 HET GOL A 520 6 HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM 6SU METHYL 3-(METHYLSULFONYLAMINO)BENZOATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 EDO 4(C2 H6 O2) FORMUL 3 DMS C2 H6 O S FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 CL 4(CL 1-) FORMUL 14 6SU C9 H11 N O4 S FORMUL 16 PEG 3(C4 H10 O3) FORMUL 19 ACT C2 H3 O2 1- FORMUL 21 GOL C3 H8 O3 FORMUL 22 HOH *157(H2 O) HELIX 1 AA1 PRO A 254 LEU A 258 5 5 HELIX 2 AA2 THR A 306 SER A 308 5 3 HELIX 3 AA3 LYS A 319 ILE A 324 5 6 HELIX 4 AA4 ASP A 326 TYR A 340 1 15 HELIX 5 AA5 LEU A 395 SER A 400 1 6 SHEET 1 AA1 4 ASN A 191 LEU A 192 0 SHEET 2 AA1 4 TRP A 213 VAL A 224 -1 O ILE A 221 N LEU A 192 SHEET 3 AA1 4 GLY A 227 PHE A 234 -1 O LYS A 229 N GLN A 222 SHEET 4 AA1 4 LYS A 239 SER A 243 -1 O LEU A 242 N TYR A 230 SHEET 1 AA2 4 ASN A 191 LEU A 192 0 SHEET 2 AA2 4 TRP A 213 VAL A 224 -1 O ILE A 221 N LEU A 192 SHEET 3 AA2 4 ARG A 203 LYS A 207 -1 N ILE A 204 O GLY A 216 SHEET 4 AA2 4 ILE A 247 ALA A 248 -1 O ALA A 248 N LEU A 205 SHEET 1 AA3 2 PHE A 194 GLN A 195 0 SHEET 2 AA3 2 LEU A 198 ILE A 199 -1 O LEU A 198 N GLN A 195 SHEET 1 AA4 5 ALA A 302 VAL A 305 0 SHEET 2 AA4 5 PHE A 293 PHE A 297 -1 N ILE A 295 O SER A 303 SHEET 3 AA4 5 GLN A 273 GLU A 283 -1 N ALA A 282 O LEU A 294 SHEET 4 AA4 5 ARG A 263 ASP A 270 -1 N TYR A 268 O TRP A 275 SHEET 5 AA4 5 LEU A 310 PRO A 312 -1 O TYR A 311 N VAL A 265 SHEET 1 AA5 4 LEU A 353 TRP A 358 0 SHEET 2 AA5 4 THR A 361 ASP A 371 -1 O TRP A 363 N THR A 356 SHEET 3 AA5 4 LEU A 374 PHE A 379 -1 O LEU A 378 N ARG A 366 SHEET 4 AA5 4 ARG A 384 TYR A 389 -1 O ILE A 388 N VAL A 375 CISPEP 1 TYR A 340 PRO A 341 0 10.83 SITE 1 AC1 3 GLN A 273 VAL A 274 TRP A 275 SITE 1 AC2 5 GLY A 300 TYR A 301 GLU A 386 ARG A 394 SITE 2 AC2 5 6SU A 513 SITE 1 AC3 6 LYS A 207 LYS A 208 LYS A 211 LEU A 242 SITE 2 AC3 6 HIS A 246 HOH A 693 SITE 1 AC4 7 HIS A 214 LYS A 215 HOH A 606 HOH A 618 SITE 2 AC4 7 HOH A 619 HOH A 648 HOH A 658 SITE 1 AC5 4 ASP A 270 GLY A 271 ASN A 272 GLN A 273 SITE 1 AC6 4 THR A 306 GLN A 307 SER A 308 ARG A 384 SITE 1 AC7 3 ARG A 203 HOH A 637 HOH A 715 SITE 1 AC8 3 PRO A 316 LYS A 318 HOH A 634 SITE 1 AC9 3 ARG A 209 LYS A 364 ASP A 381 SITE 1 AD1 3 LYS A 318 SER A 350 EDO A 514 SITE 1 AD2 2 SER A 243 HIS A 246 SITE 1 AD3 1 GLY A 225 SITE 1 AD4 9 PHE A 296 GLY A 300 ALA A 302 SER A 328 SITE 2 AD4 9 CYS A 329 PHE A 332 TYR A 389 DMS A 502 SITE 3 AD4 9 HOH A 660 SITE 1 AD5 5 ASN A 245 ARG A 315 PRO A 316 LEU A 317 SITE 2 AD5 5 CL A 510 SITE 1 AD6 5 LYS A 269 TYR A 301 ALA A 302 TRP A 387 SITE 2 AD6 5 HOH A 620 SITE 1 AD7 8 GLU A 283 ASN A 286 LYS A 288 TYR A 304 SITE 2 AD7 8 ARG A 343 GLY A 372 SER A 373 HOH A 719 SITE 1 AD8 4 LYS A 290 ARG A 292 ASP A 371 HOH A 724 SITE 1 AD9 3 GLU A 190 ASN A 191 THR A 223 SITE 1 AE1 6 SER A 303 TYR A 304 ASP A 371 TRP A 387 SITE 2 AE1 6 HOH A 640 HOH A 650 SITE 1 AE2 5 LYS A 208 THR A 210 THR A 212 HIS A 214 SITE 2 AE2 5 HOH A 743 CRYST1 55.760 63.810 70.310 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014223 0.00000