HEADER RNA 14-JUN-16 5KH8 TITLE SOLUTION STRUCTURES OF THE APO STATE FLUORIDE RIBOSWITCH COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSWITCH (47-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS APO STATE, PSEUDOKNOT, RIBOSWITCH APTAMER, TRANSCRIPTIONAL KEYWDS 2 REGULATION, RNA EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Q.ZHANG,B.ZHAO REVDAT 6 14-JUN-23 5KH8 1 REMARK REVDAT 5 25-DEC-19 5KH8 1 REMARK REVDAT 4 20-SEP-17 5KH8 1 REMARK REVDAT 3 30-AUG-17 5KH8 1 JRNL REVDAT 2 02-AUG-17 5KH8 1 JRNL REVDAT 1 19-JUL-17 5KH8 0 JRNL AUTH B.ZHAO,S.L.GUFFY,B.WILLIAMS,Q.ZHANG JRNL TITL AN EXCITED STATE UNDERLIES GENE REGULATION OF A JRNL TITL 2 TRANSCRIPTIONAL RIBOSWITCH. JRNL REF NAT. CHEM. BIOL. V. 13 968 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28719589 JRNL DOI 10.1038/NCHEMBIO.2427 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KH8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222101. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 283 REMARK 210 PH : 6.4; 6.4 REMARK 210 IONIC STRENGTH : 80; 80 REMARK 210 PRESSURE : AMBIENT ATM; AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM RNA (47MER), 10 MM REMARK 210 MAGNESIUM CHLORIDE, 10 MM SODIUM REMARK 210 PHOSPHATE, 50 MM POTASSIUM REMARK 210 CHLORIDE, 50 UM EDTA, 95% H2O/5% REMARK 210 D2O; 1.0 MM RNA (47MER), 10 MM REMARK 210 MAGNESIUM CHLORIDE, 10 MM SODIUM REMARK 210 PHOSPHATE, 50 MM POTASSIUM REMARK 210 CHLORIDE, 50 UM EDTA, 100% D2O; REMARK 210 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 RNA (47MER), 10 MM MAGNESIUM REMARK 210 CHLORIDE, 10 MM SODIUM PHOSPHATE, REMARK 210 50 MM POTASSIUM CHLORIDE, 50 UM REMARK 210 EDTA, 95% H2O/5% D2O; 1.0 MM [U- REMARK 210 100% 13C; U-100% 15N] RNA (47MER) REMARK 210 , 10 MM MAGNESIUM CHLORIDE, 10 REMARK 210 MM SODIUM PHOSPHATE, 50 MM REMARK 210 POTASSIUM CHLORIDE, 50 UM EDTA, REMARK 210 100% D2O; 1.0 MM [U-13C; U-15N]- REMARK 210 GUA RNA (47MER), 10 MM MAGNESIUM REMARK 210 CHLORIDE, 10 MM SODIUM PHOSPHATE, REMARK 210 50 MM POTASSIUM CHLORIDE, 50 UM REMARK 210 EDTA, 100% D2O; 1.0 MM [U-13C; U- REMARK 210 15N]-ADE ;[U-13C; U-15N]-URA RNA REMARK 210 (47MER), 10 MM MAGNESIUM REMARK 210 CHLORIDE, 10 MM SODIUM PHOSPHATE, REMARK 210 50 MM POTASSIUM CHLORIDE, 50 UM REMARK 210 EDTA, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D HCCH COSY; 3D HCCH-TOCSY; 31P REMARK 210 SPIN-ECHO; CH-HCCH SPIN-ECHO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.2, NMRDRAW, SPARKY REMARK 210 3.110, X-PLOR NIH REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30108 RELATED DB: BMRB DBREF 5KH8 A 1 47 PDB 5KH8 5KH8 1 47 SEQRES 1 A 47 G G C G A U G G U G U U C SEQRES 2 A 47 G C C A U A A A C G C U C SEQRES 3 A 47 U U C G G A G C U A A U G SEQRES 4 A 47 A C A C C U A C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1