data_5KIP # _entry.id 5KIP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5KIP pdb_00005kip 10.2210/pdb5kip/pdb WWPDB D_1000222299 ? ? EMDB EMD-8253 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-10-05 2 'Structure model' 1 1 2016-10-26 3 'Structure model' 1 2 2017-09-13 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2019-12-25 6 'Structure model' 1 5 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Experimental preparation' 7 5 'Structure model' 'Author supporting evidence' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Database references' 10 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' em_image_scans 3 3 'Structure model' em_software 4 3 'Structure model' pdbx_audit_support 5 4 'Structure model' em_sample_support 6 5 'Structure model' pdbx_audit_support 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond 9 6 'Structure model' database_2 10 6 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_em_software.name' 3 3 'Structure model' '_pdbx_audit_support.funding_organization' 4 4 'Structure model' '_em_sample_support.grid_type' 5 5 'Structure model' '_pdbx_audit_support.funding_organization' 6 6 'Structure model' '_database_2.pdbx_DOI' 7 6 'Structure model' '_database_2.pdbx_database_accession' 8 6 'Structure model' '_pdbx_struct_oper_list.name' 9 6 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 10 6 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5KIP _pdbx_database_status.recvd_initial_deposition_date 2016-06-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-8253 'associated EM volume' EMDB . EMD-8254 'other EM volume' EMDB . EMD-8255 'other EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gorzelnik, K.V.' 1 'Cui, Z.' 2 'Zhang, J.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 113 _citation.language ? _citation.page_first 11519 _citation.page_last 11524 _citation.title ;Asymmetric cryo-EM structure of the canonical Allolevivirus Q beta reveals a single maturation protein and the genomic ssRNA in situ. ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1609482113 _citation.pdbx_database_id_PubMed 27671640 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gorzelnik, K.V.' 1 ? primary 'Cui, Z.' 2 ? primary 'Reed, C.A.' 3 ? primary 'Jakana, J.' 4 ? primary 'Young, R.' 5 ? primary 'Zhang, J.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Coat protein' _entity.formula_weight 14268.071 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAKLETVTLGNIGKDGKQTLVLNPRGVNPTNGVASLSQAGAVPALEKRVTVSVSQPSRNRKNYKVQVKIQNPTACTANGS CDPSVTRQAYADVTFSFTQYSTDEERAFVRTELAALLASPLLIDAIDQLNPAY ; _entity_poly.pdbx_seq_one_letter_code_can ;MAKLETVTLGNIGKDGKQTLVLNPRGVNPTNGVASLSQAGAVPALEKRVTVSVSQPSRNRKNYKVQVKIQNPTACTANGS CDPSVTRQAYADVTFSFTQYSTDEERAFVRTELAALLASPLLIDAIDQLNPAY ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 LEU n 1 5 GLU n 1 6 THR n 1 7 VAL n 1 8 THR n 1 9 LEU n 1 10 GLY n 1 11 ASN n 1 12 ILE n 1 13 GLY n 1 14 LYS n 1 15 ASP n 1 16 GLY n 1 17 LYS n 1 18 GLN n 1 19 THR n 1 20 LEU n 1 21 VAL n 1 22 LEU n 1 23 ASN n 1 24 PRO n 1 25 ARG n 1 26 GLY n 1 27 VAL n 1 28 ASN n 1 29 PRO n 1 30 THR n 1 31 ASN n 1 32 GLY n 1 33 VAL n 1 34 ALA n 1 35 SER n 1 36 LEU n 1 37 SER n 1 38 GLN n 1 39 ALA n 1 40 GLY n 1 41 ALA n 1 42 VAL n 1 43 PRO n 1 44 ALA n 1 45 LEU n 1 46 GLU n 1 47 LYS n 1 48 ARG n 1 49 VAL n 1 50 THR n 1 51 VAL n 1 52 SER n 1 53 VAL n 1 54 SER n 1 55 GLN n 1 56 PRO n 1 57 SER n 1 58 ARG n 1 59 ASN n 1 60 ARG n 1 61 LYS n 1 62 ASN n 1 63 TYR n 1 64 LYS n 1 65 VAL n 1 66 GLN n 1 67 VAL n 1 68 LYS n 1 69 ILE n 1 70 GLN n 1 71 ASN n 1 72 PRO n 1 73 THR n 1 74 ALA n 1 75 CYS n 1 76 THR n 1 77 ALA n 1 78 ASN n 1 79 GLY n 1 80 SER n 1 81 CYS n 1 82 ASP n 1 83 PRO n 1 84 SER n 1 85 VAL n 1 86 THR n 1 87 ARG n 1 88 GLN n 1 89 ALA n 1 90 TYR n 1 91 ALA n 1 92 ASP n 1 93 VAL n 1 94 THR n 1 95 PHE n 1 96 SER n 1 97 PHE n 1 98 THR n 1 99 GLN n 1 100 TYR n 1 101 SER n 1 102 THR n 1 103 ASP n 1 104 GLU n 1 105 GLU n 1 106 ARG n 1 107 ALA n 1 108 PHE n 1 109 VAL n 1 110 ARG n 1 111 THR n 1 112 GLU n 1 113 LEU n 1 114 ALA n 1 115 ALA n 1 116 LEU n 1 117 LEU n 1 118 ALA n 1 119 SER n 1 120 PRO n 1 121 LEU n 1 122 LEU n 1 123 ILE n 1 124 ASP n 1 125 ALA n 1 126 ILE n 1 127 ASP n 1 128 GLN n 1 129 LEU n 1 130 ASN n 1 131 PRO n 1 132 ALA n 1 133 TYR n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 133 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Enterobacteria phage Qbeta' _entity_src_nat.pdbx_ncbi_taxonomy_id 39803 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 ALA 2 1 1 ALA ALA A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 THR 6 5 5 THR THR A . n A 1 7 VAL 7 6 6 VAL VAL A . n A 1 8 THR 8 7 7 THR THR A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 ASN 11 10 10 ASN ASN A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 LYS 14 13 13 LYS LYS A . n A 1 15 ASP 15 14 14 ASP ASP A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 GLN 18 17 17 GLN GLN A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 ASN 23 22 22 ASN ASN A . n A 1 24 PRO 24 23 23 PRO PRO A . n A 1 25 ARG 25 24 24 ARG ARG A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 VAL 27 26 26 VAL VAL A . n A 1 28 ASN 28 27 27 ASN ASN A . n A 1 29 PRO 29 28 28 PRO PRO A . n A 1 30 THR 30 29 29 THR THR A . n A 1 31 ASN 31 30 30 ASN ASN A . n A 1 32 GLY 32 31 31 GLY GLY A . n A 1 33 VAL 33 32 32 VAL VAL A . n A 1 34 ALA 34 33 33 ALA ALA A . n A 1 35 SER 35 34 34 SER SER A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 SER 37 36 36 SER SER A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 ALA 39 38 38 ALA ALA A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 VAL 42 41 41 VAL VAL A . n A 1 43 PRO 43 42 42 PRO PRO A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 LYS 47 46 46 LYS LYS A . n A 1 48 ARG 48 47 47 ARG ARG A . n A 1 49 VAL 49 48 48 VAL VAL A . n A 1 50 THR 50 49 49 THR THR A . n A 1 51 VAL 51 50 50 VAL VAL A . n A 1 52 SER 52 51 51 SER SER A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 SER 54 53 53 SER SER A . n A 1 55 GLN 55 54 54 GLN GLN A . n A 1 56 PRO 56 55 55 PRO PRO A . n A 1 57 SER 57 56 56 SER SER A . n A 1 58 ARG 58 57 ? ? ? A . n A 1 59 ASN 59 58 ? ? ? A . n A 1 60 ARG 60 59 59 ARG ARG A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 ASN 62 61 61 ASN ASN A . n A 1 63 TYR 63 62 62 TYR TYR A . n A 1 64 LYS 64 63 63 LYS LYS A . n A 1 65 VAL 65 64 64 VAL VAL A . n A 1 66 GLN 66 65 65 GLN GLN A . n A 1 67 VAL 67 66 66 VAL VAL A . n A 1 68 LYS 68 67 67 LYS LYS A . n A 1 69 ILE 69 68 68 ILE ILE A . n A 1 70 GLN 70 69 69 GLN GLN A . n A 1 71 ASN 71 70 70 ASN ASN A . n A 1 72 PRO 72 71 71 PRO PRO A . n A 1 73 THR 73 72 72 THR THR A . n A 1 74 ALA 74 73 73 ALA ALA A . n A 1 75 CYS 75 74 74 CYS CYS A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 ALA 77 76 76 ALA ALA A . n A 1 78 ASN 78 77 77 ASN ASN A . n A 1 79 GLY 79 78 78 GLY GLY A . n A 1 80 SER 80 79 79 SER SER A . n A 1 81 CYS 81 80 80 CYS CYS A . n A 1 82 ASP 82 81 81 ASP ASP A . n A 1 83 PRO 83 82 82 PRO PRO A . n A 1 84 SER 84 83 83 SER SER A . n A 1 85 VAL 85 84 84 VAL VAL A . n A 1 86 THR 86 85 85 THR THR A . n A 1 87 ARG 87 86 86 ARG ARG A . n A 1 88 GLN 88 87 87 GLN GLN A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 TYR 90 89 89 TYR TYR A . n A 1 91 ALA 91 90 90 ALA ALA A . n A 1 92 ASP 92 91 91 ASP ASP A . n A 1 93 VAL 93 92 92 VAL VAL A . n A 1 94 THR 94 93 93 THR THR A . n A 1 95 PHE 95 94 94 PHE PHE A . n A 1 96 SER 96 95 95 SER SER A . n A 1 97 PHE 97 96 96 PHE PHE A . n A 1 98 THR 98 97 97 THR THR A . n A 1 99 GLN 99 98 98 GLN GLN A . n A 1 100 TYR 100 99 99 TYR TYR A . n A 1 101 SER 101 100 100 SER SER A . n A 1 102 THR 102 101 101 THR THR A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 GLU 104 103 103 GLU GLU A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 ARG 106 105 105 ARG ARG A . n A 1 107 ALA 107 106 106 ALA ALA A . n A 1 108 PHE 108 107 107 PHE PHE A . n A 1 109 VAL 109 108 108 VAL VAL A . n A 1 110 ARG 110 109 109 ARG ARG A . n A 1 111 THR 111 110 110 THR THR A . n A 1 112 GLU 112 111 111 GLU GLU A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 ALA 114 113 113 ALA ALA A . n A 1 115 ALA 115 114 114 ALA ALA A . n A 1 116 LEU 116 115 115 LEU LEU A . n A 1 117 LEU 117 116 116 LEU LEU A . n A 1 118 ALA 118 117 117 ALA ALA A . n A 1 119 SER 119 118 118 SER SER A . n A 1 120 PRO 120 119 119 PRO PRO A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 ILE 123 122 122 ILE ILE A . n A 1 124 ASP 124 123 123 ASP ASP A . n A 1 125 ALA 125 124 124 ALA ALA A . n A 1 126 ILE 126 125 125 ILE ILE A . n A 1 127 ASP 127 126 126 ASP ASP A . n A 1 128 GLN 128 127 127 GLN GLN A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 ASN 130 129 129 ASN ASN A . n A 1 131 PRO 131 130 130 PRO PRO A . n A 1 132 ALA 132 131 131 ALA ALA A . n A 1 133 TYR 133 132 ? ? ? A . n B 1 1 MET 1 0 ? ? ? B . n B 1 2 ALA 2 1 1 ALA ALA B . n B 1 3 LYS 3 2 2 LYS LYS B . n B 1 4 LEU 4 3 3 LEU LEU B . n B 1 5 GLU 5 4 4 GLU GLU B . n B 1 6 THR 6 5 5 THR THR B . n B 1 7 VAL 7 6 6 VAL VAL B . n B 1 8 THR 8 7 7 THR THR B . n B 1 9 LEU 9 8 8 LEU LEU B . n B 1 10 GLY 10 9 9 GLY GLY B . n B 1 11 ASN 11 10 10 ASN ASN B . n B 1 12 ILE 12 11 11 ILE ILE B . n B 1 13 GLY 13 12 12 GLY GLY B . n B 1 14 LYS 14 13 13 LYS LYS B . n B 1 15 ASP 15 14 14 ASP ASP B . n B 1 16 GLY 16 15 15 GLY GLY B . n B 1 17 LYS 17 16 16 LYS LYS B . n B 1 18 GLN 18 17 17 GLN GLN B . n B 1 19 THR 19 18 18 THR THR B . n B 1 20 LEU 20 19 19 LEU LEU B . n B 1 21 VAL 21 20 20 VAL VAL B . n B 1 22 LEU 22 21 21 LEU LEU B . n B 1 23 ASN 23 22 22 ASN ASN B . n B 1 24 PRO 24 23 23 PRO PRO B . n B 1 25 ARG 25 24 24 ARG ARG B . n B 1 26 GLY 26 25 25 GLY GLY B . n B 1 27 VAL 27 26 26 VAL VAL B . n B 1 28 ASN 28 27 27 ASN ASN B . n B 1 29 PRO 29 28 28 PRO PRO B . n B 1 30 THR 30 29 29 THR THR B . n B 1 31 ASN 31 30 30 ASN ASN B . n B 1 32 GLY 32 31 31 GLY GLY B . n B 1 33 VAL 33 32 32 VAL VAL B . n B 1 34 ALA 34 33 33 ALA ALA B . n B 1 35 SER 35 34 34 SER SER B . n B 1 36 LEU 36 35 35 LEU LEU B . n B 1 37 SER 37 36 36 SER SER B . n B 1 38 GLN 38 37 37 GLN GLN B . n B 1 39 ALA 39 38 38 ALA ALA B . n B 1 40 GLY 40 39 39 GLY GLY B . n B 1 41 ALA 41 40 40 ALA ALA B . n B 1 42 VAL 42 41 41 VAL VAL B . n B 1 43 PRO 43 42 42 PRO PRO B . n B 1 44 ALA 44 43 43 ALA ALA B . n B 1 45 LEU 45 44 44 LEU LEU B . n B 1 46 GLU 46 45 45 GLU GLU B . n B 1 47 LYS 47 46 46 LYS LYS B . n B 1 48 ARG 48 47 47 ARG ARG B . n B 1 49 VAL 49 48 48 VAL VAL B . n B 1 50 THR 50 49 49 THR THR B . n B 1 51 VAL 51 50 50 VAL VAL B . n B 1 52 SER 52 51 51 SER SER B . n B 1 53 VAL 53 52 52 VAL VAL B . n B 1 54 SER 54 53 53 SER SER B . n B 1 55 GLN 55 54 54 GLN GLN B . n B 1 56 PRO 56 55 55 PRO PRO B . n B 1 57 SER 57 56 56 SER SER B . n B 1 58 ARG 58 57 57 ARG ARG B . n B 1 59 ASN 59 58 58 ASN ASN B . n B 1 60 ARG 60 59 59 ARG ARG B . n B 1 61 LYS 61 60 60 LYS LYS B . n B 1 62 ASN 62 61 61 ASN ASN B . n B 1 63 TYR 63 62 62 TYR TYR B . n B 1 64 LYS 64 63 63 LYS LYS B . n B 1 65 VAL 65 64 64 VAL VAL B . n B 1 66 GLN 66 65 65 GLN GLN B . n B 1 67 VAL 67 66 66 VAL VAL B . n B 1 68 LYS 68 67 67 LYS LYS B . n B 1 69 ILE 69 68 68 ILE ILE B . n B 1 70 GLN 70 69 69 GLN GLN B . n B 1 71 ASN 71 70 70 ASN ASN B . n B 1 72 PRO 72 71 71 PRO PRO B . n B 1 73 THR 73 72 72 THR THR B . n B 1 74 ALA 74 73 73 ALA ALA B . n B 1 75 CYS 75 74 74 CYS CYS B . n B 1 76 THR 76 75 75 THR THR B . n B 1 77 ALA 77 76 76 ALA ALA B . n B 1 78 ASN 78 77 77 ASN ASN B . n B 1 79 GLY 79 78 78 GLY GLY B . n B 1 80 SER 80 79 79 SER SER B . n B 1 81 CYS 81 80 80 CYS CYS B . n B 1 82 ASP 82 81 81 ASP ASP B . n B 1 83 PRO 83 82 82 PRO PRO B . n B 1 84 SER 84 83 83 SER SER B . n B 1 85 VAL 85 84 84 VAL VAL B . n B 1 86 THR 86 85 85 THR THR B . n B 1 87 ARG 87 86 86 ARG ARG B . n B 1 88 GLN 88 87 87 GLN GLN B . n B 1 89 ALA 89 88 88 ALA ALA B . n B 1 90 TYR 90 89 89 TYR TYR B . n B 1 91 ALA 91 90 90 ALA ALA B . n B 1 92 ASP 92 91 91 ASP ASP B . n B 1 93 VAL 93 92 92 VAL VAL B . n B 1 94 THR 94 93 93 THR THR B . n B 1 95 PHE 95 94 94 PHE PHE B . n B 1 96 SER 96 95 95 SER SER B . n B 1 97 PHE 97 96 96 PHE PHE B . n B 1 98 THR 98 97 97 THR THR B . n B 1 99 GLN 99 98 98 GLN GLN B . n B 1 100 TYR 100 99 99 TYR TYR B . n B 1 101 SER 101 100 100 SER SER B . n B 1 102 THR 102 101 101 THR THR B . n B 1 103 ASP 103 102 102 ASP ASP B . n B 1 104 GLU 104 103 103 GLU GLU B . n B 1 105 GLU 105 104 104 GLU GLU B . n B 1 106 ARG 106 105 105 ARG ARG B . n B 1 107 ALA 107 106 106 ALA ALA B . n B 1 108 PHE 108 107 107 PHE PHE B . n B 1 109 VAL 109 108 108 VAL VAL B . n B 1 110 ARG 110 109 109 ARG ARG B . n B 1 111 THR 111 110 110 THR THR B . n B 1 112 GLU 112 111 111 GLU GLU B . n B 1 113 LEU 113 112 112 LEU LEU B . n B 1 114 ALA 114 113 113 ALA ALA B . n B 1 115 ALA 115 114 114 ALA ALA B . n B 1 116 LEU 116 115 115 LEU LEU B . n B 1 117 LEU 117 116 116 LEU LEU B . n B 1 118 ALA 118 117 117 ALA ALA B . n B 1 119 SER 119 118 118 SER SER B . n B 1 120 PRO 120 119 119 PRO PRO B . n B 1 121 LEU 121 120 120 LEU LEU B . n B 1 122 LEU 122 121 121 LEU LEU B . n B 1 123 ILE 123 122 122 ILE ILE B . n B 1 124 ASP 124 123 123 ASP ASP B . n B 1 125 ALA 125 124 124 ALA ALA B . n B 1 126 ILE 126 125 125 ILE ILE B . n B 1 127 ASP 127 126 126 ASP ASP B . n B 1 128 GLN 128 127 127 GLN GLN B . n B 1 129 LEU 129 128 128 LEU LEU B . n B 1 130 ASN 130 129 129 ASN ASN B . n B 1 131 PRO 131 130 130 PRO PRO B . n B 1 132 ALA 132 131 131 ALA ALA B . n B 1 133 TYR 133 132 132 TYR TYR B . n C 1 1 MET 1 0 ? ? ? C . n C 1 2 ALA 2 1 1 ALA ALA C . n C 1 3 LYS 3 2 2 LYS LYS C . n C 1 4 LEU 4 3 3 LEU LEU C . n C 1 5 GLU 5 4 4 GLU GLU C . n C 1 6 THR 6 5 5 THR THR C . n C 1 7 VAL 7 6 6 VAL VAL C . n C 1 8 THR 8 7 7 THR THR C . n C 1 9 LEU 9 8 8 LEU LEU C . n C 1 10 GLY 10 9 9 GLY GLY C . n C 1 11 ASN 11 10 10 ASN ASN C . n C 1 12 ILE 12 11 11 ILE ILE C . n C 1 13 GLY 13 12 12 GLY GLY C . n C 1 14 LYS 14 13 13 LYS LYS C . n C 1 15 ASP 15 14 14 ASP ASP C . n C 1 16 GLY 16 15 15 GLY GLY C . n C 1 17 LYS 17 16 16 LYS LYS C . n C 1 18 GLN 18 17 17 GLN GLN C . n C 1 19 THR 19 18 18 THR THR C . n C 1 20 LEU 20 19 19 LEU LEU C . n C 1 21 VAL 21 20 20 VAL VAL C . n C 1 22 LEU 22 21 21 LEU LEU C . n C 1 23 ASN 23 22 22 ASN ASN C . n C 1 24 PRO 24 23 23 PRO PRO C . n C 1 25 ARG 25 24 24 ARG ARG C . n C 1 26 GLY 26 25 25 GLY GLY C . n C 1 27 VAL 27 26 26 VAL VAL C . n C 1 28 ASN 28 27 27 ASN ASN C . n C 1 29 PRO 29 28 28 PRO PRO C . n C 1 30 THR 30 29 29 THR THR C . n C 1 31 ASN 31 30 30 ASN ASN C . n C 1 32 GLY 32 31 31 GLY GLY C . n C 1 33 VAL 33 32 32 VAL VAL C . n C 1 34 ALA 34 33 33 ALA ALA C . n C 1 35 SER 35 34 34 SER SER C . n C 1 36 LEU 36 35 35 LEU LEU C . n C 1 37 SER 37 36 36 SER SER C . n C 1 38 GLN 38 37 37 GLN GLN C . n C 1 39 ALA 39 38 38 ALA ALA C . n C 1 40 GLY 40 39 39 GLY GLY C . n C 1 41 ALA 41 40 40 ALA ALA C . n C 1 42 VAL 42 41 41 VAL VAL C . n C 1 43 PRO 43 42 42 PRO PRO C . n C 1 44 ALA 44 43 43 ALA ALA C . n C 1 45 LEU 45 44 44 LEU LEU C . n C 1 46 GLU 46 45 45 GLU GLU C . n C 1 47 LYS 47 46 46 LYS LYS C . n C 1 48 ARG 48 47 47 ARG ARG C . n C 1 49 VAL 49 48 48 VAL VAL C . n C 1 50 THR 50 49 49 THR THR C . n C 1 51 VAL 51 50 50 VAL VAL C . n C 1 52 SER 52 51 51 SER SER C . n C 1 53 VAL 53 52 52 VAL VAL C . n C 1 54 SER 54 53 53 SER SER C . n C 1 55 GLN 55 54 54 GLN GLN C . n C 1 56 PRO 56 55 55 PRO PRO C . n C 1 57 SER 57 56 56 SER SER C . n C 1 58 ARG 58 57 ? ? ? C . n C 1 59 ASN 59 58 ? ? ? C . n C 1 60 ARG 60 59 59 ARG ARG C . n C 1 61 LYS 61 60 60 LYS LYS C . n C 1 62 ASN 62 61 61 ASN ASN C . n C 1 63 TYR 63 62 62 TYR TYR C . n C 1 64 LYS 64 63 63 LYS LYS C . n C 1 65 VAL 65 64 64 VAL VAL C . n C 1 66 GLN 66 65 65 GLN GLN C . n C 1 67 VAL 67 66 66 VAL VAL C . n C 1 68 LYS 68 67 67 LYS LYS C . n C 1 69 ILE 69 68 68 ILE ILE C . n C 1 70 GLN 70 69 69 GLN GLN C . n C 1 71 ASN 71 70 70 ASN ASN C . n C 1 72 PRO 72 71 71 PRO PRO C . n C 1 73 THR 73 72 72 THR THR C . n C 1 74 ALA 74 73 73 ALA ALA C . n C 1 75 CYS 75 74 74 CYS CYS C . n C 1 76 THR 76 75 75 THR THR C . n C 1 77 ALA 77 76 76 ALA ALA C . n C 1 78 ASN 78 77 77 ASN ASN C . n C 1 79 GLY 79 78 78 GLY GLY C . n C 1 80 SER 80 79 79 SER SER C . n C 1 81 CYS 81 80 80 CYS CYS C . n C 1 82 ASP 82 81 81 ASP ASP C . n C 1 83 PRO 83 82 82 PRO PRO C . n C 1 84 SER 84 83 83 SER SER C . n C 1 85 VAL 85 84 84 VAL VAL C . n C 1 86 THR 86 85 85 THR THR C . n C 1 87 ARG 87 86 86 ARG ARG C . n C 1 88 GLN 88 87 87 GLN GLN C . n C 1 89 ALA 89 88 88 ALA ALA C . n C 1 90 TYR 90 89 89 TYR TYR C . n C 1 91 ALA 91 90 90 ALA ALA C . n C 1 92 ASP 92 91 91 ASP ASP C . n C 1 93 VAL 93 92 92 VAL VAL C . n C 1 94 THR 94 93 93 THR THR C . n C 1 95 PHE 95 94 94 PHE PHE C . n C 1 96 SER 96 95 95 SER SER C . n C 1 97 PHE 97 96 96 PHE PHE C . n C 1 98 THR 98 97 97 THR THR C . n C 1 99 GLN 99 98 98 GLN GLN C . n C 1 100 TYR 100 99 99 TYR TYR C . n C 1 101 SER 101 100 100 SER SER C . n C 1 102 THR 102 101 101 THR THR C . n C 1 103 ASP 103 102 102 ASP ASP C . n C 1 104 GLU 104 103 103 GLU GLU C . n C 1 105 GLU 105 104 104 GLU GLU C . n C 1 106 ARG 106 105 105 ARG ARG C . n C 1 107 ALA 107 106 106 ALA ALA C . n C 1 108 PHE 108 107 107 PHE PHE C . n C 1 109 VAL 109 108 108 VAL VAL C . n C 1 110 ARG 110 109 109 ARG ARG C . n C 1 111 THR 111 110 110 THR THR C . n C 1 112 GLU 112 111 111 GLU GLU C . n C 1 113 LEU 113 112 112 LEU LEU C . n C 1 114 ALA 114 113 113 ALA ALA C . n C 1 115 ALA 115 114 114 ALA ALA C . n C 1 116 LEU 116 115 115 LEU LEU C . n C 1 117 LEU 117 116 116 LEU LEU C . n C 1 118 ALA 118 117 117 ALA ALA C . n C 1 119 SER 119 118 118 SER SER C . n C 1 120 PRO 120 119 119 PRO PRO C . n C 1 121 LEU 121 120 120 LEU LEU C . n C 1 122 LEU 122 121 121 LEU LEU C . n C 1 123 ILE 123 122 122 ILE ILE C . n C 1 124 ASP 124 123 123 ASP ASP C . n C 1 125 ALA 125 124 124 ALA ALA C . n C 1 126 ILE 126 125 125 ILE ILE C . n C 1 127 ASP 127 126 126 ASP ASP C . n C 1 128 GLN 128 127 127 GLN GLN C . n C 1 129 LEU 129 128 128 LEU LEU C . n C 1 130 ASN 130 129 129 ASN ASN C . n C 1 131 PRO 131 130 130 PRO PRO C . n C 1 132 ALA 132 131 131 ALA ALA C . n C 1 133 TYR 133 132 ? ? ? C . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 16 ? CG ? A LYS 17 CG 2 1 Y 1 A LYS 16 ? CD ? A LYS 17 CD 3 1 Y 1 A LYS 16 ? CE ? A LYS 17 CE 4 1 Y 1 A LYS 16 ? NZ ? A LYS 17 NZ 5 1 Y 1 A SER 56 ? OG ? A SER 57 OG 6 1 Y 1 A ARG 59 ? CG ? A ARG 60 CG 7 1 Y 1 A ARG 59 ? CD ? A ARG 60 CD 8 1 Y 1 A ARG 59 ? NE ? A ARG 60 NE 9 1 Y 1 A ARG 59 ? CZ ? A ARG 60 CZ 10 1 Y 1 A ARG 59 ? NH1 ? A ARG 60 NH1 11 1 Y 1 A ARG 59 ? NH2 ? A ARG 60 NH2 12 1 Y 1 A LYS 60 ? CG ? A LYS 61 CG 13 1 Y 1 A LYS 60 ? CD ? A LYS 61 CD 14 1 Y 1 A LYS 60 ? CE ? A LYS 61 CE 15 1 Y 1 A LYS 60 ? NZ ? A LYS 61 NZ 16 1 Y 1 A ASN 77 ? CG ? A ASN 78 CG 17 1 Y 1 A ASN 77 ? OD1 ? A ASN 78 OD1 18 1 Y 1 A ASN 77 ? ND2 ? A ASN 78 ND2 19 1 Y 1 B LYS 16 ? CG ? B LYS 17 CG 20 1 Y 1 B LYS 16 ? CD ? B LYS 17 CD 21 1 Y 1 B LYS 16 ? CE ? B LYS 17 CE 22 1 Y 1 B LYS 16 ? NZ ? B LYS 17 NZ 23 1 Y 1 B SER 56 ? OG ? B SER 57 OG 24 1 Y 1 B ARG 57 ? CG ? B ARG 58 CG 25 1 Y 1 B ARG 57 ? CD ? B ARG 58 CD 26 1 Y 1 B ARG 57 ? NE ? B ARG 58 NE 27 1 Y 1 B ARG 57 ? CZ ? B ARG 58 CZ 28 1 Y 1 B ARG 57 ? NH1 ? B ARG 58 NH1 29 1 Y 1 B ARG 57 ? NH2 ? B ARG 58 NH2 30 1 Y 1 B ASN 58 ? CG ? B ASN 59 CG 31 1 Y 1 B ASN 58 ? OD1 ? B ASN 59 OD1 32 1 Y 1 B ASN 58 ? ND2 ? B ASN 59 ND2 33 1 Y 1 B ARG 59 ? CG ? B ARG 60 CG 34 1 Y 1 B ARG 59 ? CD ? B ARG 60 CD 35 1 Y 1 B ARG 59 ? NE ? B ARG 60 NE 36 1 Y 1 B ARG 59 ? CZ ? B ARG 60 CZ 37 1 Y 1 B ARG 59 ? NH1 ? B ARG 60 NH1 38 1 Y 1 B ARG 59 ? NH2 ? B ARG 60 NH2 39 1 Y 1 B LYS 60 ? CG ? B LYS 61 CG 40 1 Y 1 B LYS 60 ? CD ? B LYS 61 CD 41 1 Y 1 B LYS 60 ? CE ? B LYS 61 CE 42 1 Y 1 B LYS 60 ? NZ ? B LYS 61 NZ 43 1 Y 1 B ASN 77 ? CG ? B ASN 78 CG 44 1 Y 1 B ASN 77 ? OD1 ? B ASN 78 OD1 45 1 Y 1 B ASN 77 ? ND2 ? B ASN 78 ND2 46 1 Y 1 C LYS 16 ? CG ? C LYS 17 CG 47 1 Y 1 C LYS 16 ? CD ? C LYS 17 CD 48 1 Y 1 C LYS 16 ? CE ? C LYS 17 CE 49 1 Y 1 C LYS 16 ? NZ ? C LYS 17 NZ 50 1 Y 1 C SER 56 ? OG ? C SER 57 OG 51 1 Y 1 C ARG 59 ? CG ? C ARG 60 CG 52 1 Y 1 C ARG 59 ? CD ? C ARG 60 CD 53 1 Y 1 C ARG 59 ? NE ? C ARG 60 NE 54 1 Y 1 C ARG 59 ? CZ ? C ARG 60 CZ 55 1 Y 1 C ARG 59 ? NH1 ? C ARG 60 NH1 56 1 Y 1 C ARG 59 ? NH2 ? C ARG 60 NH2 57 1 Y 1 C LYS 60 ? CG ? C LYS 61 CG 58 1 Y 1 C LYS 60 ? CD ? C LYS 61 CD 59 1 Y 1 C LYS 60 ? CE ? C LYS 61 CE 60 1 Y 1 C LYS 60 ? NZ ? C LYS 61 NZ 61 1 Y 1 C ASN 77 ? CG ? C ASN 78 CG 62 1 Y 1 C ASN 77 ? OD1 ? C ASN 78 OD1 63 1 Y 1 C ASN 77 ? ND2 ? C ASN 78 ND2 # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version dev_2306: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5KIP _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KIP _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.entry_id 5KIP _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_d_res_high . _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.008 ? 2940 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.864 ? 4026 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 6.388 ? 2439 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.053 ? 498 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.009 ? 534 ? f_plane_restr ? ? # _struct.entry_id 5KIP _struct.title 'Asymmetric unit for the coat proteins of phage Qbeta' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KIP _struct_keywords.text 'Qbeta, ssRNA, phage, virus' _struct_keywords.pdbx_keywords VIRUS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code COAT_BPQBE _struct_ref.pdbx_db_accession P03615 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAKLETVTLGNIGKDGKQTLVLNPRGVNPTNGVASLSQAGAVPALEKRVTVSVSQPSRNRKNYKVQVKIQNPTACTANGS CDPSVTRQAYADVTFSFTQYSTDEERAFVRTELAALLASPLLIDAIDQLNPAY ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5KIP A 1 ? 133 ? P03615 1 ? 133 ? 0 132 2 1 5KIP B 1 ? 133 ? P03615 1 ? 133 ? 0 132 3 1 5KIP C 1 ? 133 ? P03615 1 ? 133 ? 0 132 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 180-meric 180 2 'icosahedral asymmetric unit' ? trimeric 3 3 'icosahedral pentamer' ? pentadecameric 15 4 'icosahedral 23 hexamer' ? octadecameric 18 5 'icosahedral asymmetric unit, std point frame' ? trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C 2 1 A,B,C 3 '(1-5)' A,B,C 4 '(1,2,6,10,23,24)' A,B,C 5 P A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 1.00000000 0.00000000 0.00000000 -192.00000 0.00000000 1.00000000 0.00000000 -192.00000 0.00000000 0.00000000 1.00000000 -192.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.50000000 192.00000 0.80901699 0.50000000 0.30901699 -118.66253 -0.50000000 0.30901699 0.80901699 73.33747 3 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901699 384.00000 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901699 0.50000000 0.00000 4 'point symmetry operation' ? ? -0.80901699 0.50000000 -0.30901699 310.66253 -0.50000000 -0.30901699 0.80901699 192.00000 0.30901699 0.80901699 0.50000000 -118.66253 5 'point symmetry operation' ? ? 0.30901699 0.80901699 -0.50000000 73.33747 -0.80901699 0.50000000 0.30901699 192.00000 0.50000000 0.30901699 0.80901699 -118.66253 6 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 384.00000 0.00000000 -1.00000000 0.00000000 384.00000 0.00000000 0.00000000 1.00000000 0.00000 7 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.50000000 192.00000 -0.80901699 -0.50000000 -0.30901699 502.66253 -0.50000000 0.30901699 0.80901699 73.33747 8 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 -0.80901699 384.00000 -0.30901699 0.80901699 0.50000000 0.00000 9 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901699 73.33747 0.50000000 0.30901699 -0.80901699 192.00000 0.30901699 0.80901699 0.50000000 -118.66253 10 'point symmetry operation' ? ? -0.30901699 -0.80901699 0.50000000 310.66253 0.80901699 -0.50000000 -0.30901699 192.00000 0.50000000 0.30901699 0.80901699 -118.66253 11 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 384.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 384.00000 12 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.50000000 192.00000 0.80901699 0.50000000 0.30901699 -118.66253 0.50000000 -0.30901699 -0.80901699 310.66253 13 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 0.30901699 -0.80901699 -0.50000000 384.00000 14 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901699 73.33747 -0.50000000 -0.30901699 0.80901699 192.00000 -0.30901699 -0.80901699 -0.50000000 502.66253 15 'point symmetry operation' ? ? -0.30901699 -0.80901699 0.50000000 310.66253 -0.80901699 0.50000000 0.30901699 192.00000 -0.50000000 -0.30901699 -0.80901699 502.66253 16 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 384.00000 0.00000000 0.00000000 -1.00000000 384.00000 17 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.50000000 192.00000 -0.80901699 -0.50000000 -0.30901699 502.66253 0.50000000 -0.30901699 -0.80901699 310.66253 18 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901699 384.00000 -0.50000000 0.30901699 -0.80901699 384.00000 0.30901699 -0.80901699 -0.50000000 384.00000 19 'point symmetry operation' ? ? -0.80901699 0.50000000 -0.30901699 310.66253 0.50000000 0.30901699 -0.80901699 192.00000 -0.30901699 -0.80901699 -0.50000000 502.66253 20 'point symmetry operation' ? ? 0.30901699 0.80901699 -0.50000000 73.33747 0.80901699 -0.50000000 -0.30901699 192.00000 -0.50000000 -0.30901699 -0.80901699 502.66253 21 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 22 'point symmetry operation' ? ? -0.50000000 0.30901699 0.80901699 73.33747 0.30901699 -0.80901699 0.50000000 192.00000 0.80901699 0.50000000 0.30901699 -118.66253 23 'point symmetry operation' ? ? -0.30901699 0.80901699 0.50000000 0.00000 -0.80901699 -0.50000000 0.30901699 384.00000 0.50000000 -0.30901699 0.80901699 0.00000 24 'point symmetry operation' ? ? 0.30901699 0.80901699 0.50000000 -118.66253 -0.80901699 0.50000000 -0.30901699 310.66253 -0.50000000 -0.30901699 0.80901699 192.00000 25 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901699 -118.66253 0.30901699 0.80901699 -0.50000000 73.33747 -0.80901699 0.50000000 0.30901699 192.00000 26 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 384.00000 0.00000000 -1.00000000 0.00000000 384.00000 27 'point symmetry operation' ? ? -0.50000000 0.30901699 0.80901699 73.33747 -0.30901699 0.80901699 -0.50000000 192.00000 -0.80901699 -0.50000000 -0.30901699 502.66253 28 'point symmetry operation' ? ? -0.30901699 0.80901699 0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 -0.80901699 384.00000 29 'point symmetry operation' ? ? 0.30901699 0.80901699 0.50000000 -118.66253 0.80901699 -0.50000000 0.30901699 73.33747 0.50000000 0.30901699 -0.80901699 192.00000 30 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901699 -118.66253 -0.30901699 -0.80901699 0.50000000 310.66253 0.80901699 -0.50000000 -0.30901699 192.00000 31 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 384.00000 -1.00000000 0.00000000 0.00000000 384.00000 0.00000000 1.00000000 0.00000000 0.00000 32 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901699 310.66253 -0.30901699 0.80901699 -0.50000000 192.00000 0.80901699 0.50000000 0.30901699 -118.66253 33 'point symmetry operation' ? ? 0.30901699 -0.80901699 -0.50000000 384.00000 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 34 'point symmetry operation' ? ? -0.30901699 -0.80901699 -0.50000000 502.66253 0.80901699 -0.50000000 0.30901699 73.33747 -0.50000000 -0.30901699 0.80901699 192.00000 35 'point symmetry operation' ? ? -0.50000000 -0.30901699 -0.80901699 502.66253 -0.30901699 -0.80901699 0.50000000 310.66253 -0.80901699 0.50000000 0.30901699 192.00000 36 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 384.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 384.00000 37 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901699 310.66253 0.30901699 -0.80901699 0.50000000 192.00000 -0.80901699 -0.50000000 -0.30901699 502.66253 38 'point symmetry operation' ? ? 0.30901699 -0.80901699 -0.50000000 384.00000 -0.80901699 -0.50000000 0.30901699 384.00000 -0.50000000 0.30901699 -0.80901699 384.00000 39 'point symmetry operation' ? ? -0.30901699 -0.80901699 -0.50000000 502.66253 -0.80901699 0.50000000 -0.30901699 310.66253 0.50000000 0.30901699 -0.80901699 192.00000 40 'point symmetry operation' ? ? -0.50000000 -0.30901699 -0.80901699 502.66253 0.30901699 0.80901699 -0.50000000 73.33747 0.80901699 -0.50000000 -0.30901699 192.00000 41 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 42 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901699 -118.66253 -0.50000000 0.30901699 0.80901699 73.33747 0.30901699 -0.80901699 0.50000000 192.00000 43 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901699 0.50000000 0.00000 -0.80901699 -0.50000000 0.30901699 384.00000 44 'point symmetry operation' ? ? -0.50000000 -0.30901699 0.80901699 192.00000 0.30901699 0.80901699 0.50000000 -118.66253 -0.80901699 0.50000000 -0.30901699 310.66253 45 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901699 192.00000 0.50000000 0.30901699 0.80901699 -118.66253 0.30901699 0.80901699 -0.50000000 73.33747 46 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 384.00000 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 384.00000 47 'point symmetry operation' ? ? -0.80901699 -0.50000000 -0.30901699 502.66253 -0.50000000 0.30901699 0.80901699 73.33747 -0.30901699 0.80901699 -0.50000000 192.00000 48 'point symmetry operation' ? ? -0.50000000 0.30901699 -0.80901699 384.00000 -0.30901699 0.80901699 0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 49 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901699 192.00000 0.30901699 0.80901699 0.50000000 -118.66253 0.80901699 -0.50000000 0.30901699 73.33747 50 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901699 192.00000 0.50000000 0.30901699 0.80901699 -118.66253 -0.30901699 -0.80901699 0.50000000 310.66253 51 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 384.00000 -1.00000000 0.00000000 0.00000000 384.00000 52 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901699 -118.66253 0.50000000 -0.30901699 -0.80901699 310.66253 -0.30901699 0.80901699 -0.50000000 192.00000 53 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901699 0.00000 0.30901699 -0.80901699 -0.50000000 384.00000 0.80901699 0.50000000 -0.30901699 0.00000 54 'point symmetry operation' ? ? -0.50000000 -0.30901699 0.80901699 192.00000 -0.30901699 -0.80901699 -0.50000000 502.66253 0.80901699 -0.50000000 0.30901699 73.33747 55 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901699 192.00000 -0.50000000 -0.30901699 -0.80901699 502.66253 -0.30901699 -0.80901699 0.50000000 310.66253 56 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 384.00000 0.00000000 0.00000000 -1.00000000 384.00000 1.00000000 0.00000000 0.00000000 0.00000 57 'point symmetry operation' ? ? -0.80901699 -0.50000000 -0.30901699 502.66253 0.50000000 -0.30901699 -0.80901699 310.66253 0.30901699 -0.80901699 0.50000000 192.00000 58 'point symmetry operation' ? ? -0.50000000 0.30901699 -0.80901699 384.00000 0.30901699 -0.80901699 -0.50000000 384.00000 -0.80901699 -0.50000000 0.30901699 384.00000 59 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901699 192.00000 -0.30901699 -0.80901699 -0.50000000 502.66253 -0.80901699 0.50000000 -0.30901699 310.66253 60 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901699 192.00000 -0.50000000 -0.30901699 -0.80901699 502.66253 0.30901699 0.80901699 -0.50000000 73.33747 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 103 ? LEU A 117 ? ASP A 102 LEU A 116 1 ? 15 HELX_P HELX_P2 AA2 ASP B 103 ? LEU B 117 ? ASP B 102 LEU B 116 1 ? 15 HELX_P HELX_P3 AA3 ASP C 103 ? LEU C 117 ? ASP C 102 LEU C 116 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 2 ? AA3 ? 6 ? AA4 ? 2 ? AA5 ? 6 ? AA6 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA6 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 7 ? GLY A 10 ? VAL A 6 GLY A 9 AA1 2 THR A 19 ? PRO A 24 ? THR A 18 PRO A 23 AA1 3 LEU A 36 ? GLN A 38 ? LEU A 35 GLN A 37 AA1 4 ARG A 48 ? THR A 50 ? ARG A 47 THR A 49 AA1 5 GLN A 66 ? ALA A 74 ? GLN A 65 ALA A 73 AA1 6 VAL A 85 ? THR A 94 ? VAL A 84 THR A 93 AA2 1 ASN A 62 ? TYR A 63 ? ASN A 61 TYR A 62 AA2 2 PHE A 97 ? THR A 98 ? PHE A 96 THR A 97 AA3 1 VAL B 7 ? GLY B 10 ? VAL B 6 GLY B 9 AA3 2 THR B 19 ? PRO B 24 ? THR B 18 PRO B 23 AA3 3 LEU B 36 ? GLN B 38 ? LEU B 35 GLN B 37 AA3 4 ARG B 48 ? THR B 50 ? ARG B 47 THR B 49 AA3 5 GLN B 66 ? ALA B 74 ? GLN B 65 ALA B 73 AA3 6 VAL B 85 ? THR B 94 ? VAL B 84 THR B 93 AA4 1 ASN B 62 ? TYR B 63 ? ASN B 61 TYR B 62 AA4 2 PHE B 97 ? THR B 98 ? PHE B 96 THR B 97 AA5 1 VAL C 7 ? GLY C 10 ? VAL C 6 GLY C 9 AA5 2 THR C 19 ? PRO C 24 ? THR C 18 PRO C 23 AA5 3 LEU C 36 ? GLN C 38 ? LEU C 35 GLN C 37 AA5 4 ARG C 48 ? THR C 50 ? ARG C 47 THR C 49 AA5 5 GLN C 66 ? ALA C 74 ? GLN C 65 ALA C 73 AA5 6 VAL C 85 ? THR C 94 ? VAL C 84 THR C 93 AA6 1 ASN C 62 ? TYR C 63 ? ASN C 61 TYR C 62 AA6 2 PHE C 97 ? THR C 98 ? PHE C 96 THR C 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 9 ? N LEU A 8 O LEU A 20 ? O LEU A 19 AA1 2 3 N ASN A 23 ? N ASN A 22 O SER A 37 ? O SER A 36 AA1 3 4 N LEU A 36 ? N LEU A 35 O VAL A 49 ? O VAL A 48 AA1 4 5 N THR A 50 ? N THR A 49 O LYS A 68 ? O LYS A 67 AA1 5 6 N ILE A 69 ? N ILE A 68 O ALA A 91 ? O ALA A 90 AA2 1 2 N TYR A 63 ? N TYR A 62 O PHE A 97 ? O PHE A 96 AA3 1 2 N LEU B 9 ? N LEU B 8 O LEU B 20 ? O LEU B 19 AA3 2 3 N ASN B 23 ? N ASN B 22 O SER B 37 ? O SER B 36 AA3 3 4 N LEU B 36 ? N LEU B 35 O VAL B 49 ? O VAL B 48 AA3 4 5 N THR B 50 ? N THR B 49 O LYS B 68 ? O LYS B 67 AA3 5 6 N ILE B 69 ? N ILE B 68 O ALA B 91 ? O ALA B 90 AA4 1 2 N TYR B 63 ? N TYR B 62 O PHE B 97 ? O PHE B 96 AA5 1 2 N LEU C 9 ? N LEU C 8 O LEU C 20 ? O LEU C 19 AA5 2 3 N ASN C 23 ? N ASN C 22 O SER C 37 ? O SER C 36 AA5 3 4 N LEU C 36 ? N LEU C 35 O VAL C 49 ? O VAL C 48 AA5 4 5 N THR C 50 ? N THR C 49 O LYS C 68 ? O LYS C 67 AA5 5 6 N ILE C 69 ? N ILE C 68 O ALA C 91 ? O ALA C 90 AA6 1 2 N TYR C 63 ? N TYR C 62 O PHE C 97 ? O PHE C 96 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A SER 100 ? ? NH1 A ARG 105 ? ? 2.17 2 1 O B SER 100 ? ? NH1 B ARG 105 ? ? 2.17 3 1 O C SER 100 ? ? NH1 C ARG 105 ? ? 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 ALA _pdbx_validate_rmsd_angle.auth_seq_id_1 76 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 ASN _pdbx_validate_rmsd_angle.auth_seq_id_2 77 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 ASN _pdbx_validate_rmsd_angle.auth_seq_id_3 77 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 137.88 _pdbx_validate_rmsd_angle.angle_target_value 121.70 _pdbx_validate_rmsd_angle.angle_deviation 16.18 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 36 ? ? -170.47 148.59 2 1 ALA A 40 ? ? -92.44 51.93 3 1 ASN A 77 ? ? -149.80 -28.92 4 1 PHE A 94 ? ? -67.63 -178.85 5 1 THR A 101 ? ? -68.18 -179.58 6 1 ALA A 106 ? ? -67.39 3.70 7 1 ILE A 125 ? ? -126.71 -53.81 8 1 LEU A 128 ? ? 55.50 17.90 9 1 PRO A 130 ? ? -68.46 -175.46 10 1 SER B 36 ? ? -170.57 148.61 11 1 ALA B 40 ? ? -92.50 51.97 12 1 ARG B 57 ? ? -83.99 48.65 13 1 ASN B 77 ? ? -147.26 -36.97 14 1 PHE B 94 ? ? -67.67 -178.87 15 1 THR B 101 ? ? -68.22 -179.52 16 1 ALA B 106 ? ? -67.42 3.70 17 1 ILE B 125 ? ? -126.76 -53.98 18 1 LEU B 128 ? ? 55.43 18.00 19 1 PRO B 130 ? ? -68.47 -175.43 20 1 SER C 36 ? ? -170.56 148.53 21 1 ALA C 40 ? ? -92.44 51.93 22 1 ASN C 77 ? ? -33.64 124.03 23 1 PHE C 94 ? ? -67.61 -178.79 24 1 THR C 101 ? ? -68.25 -179.48 25 1 ALA C 106 ? ? -67.32 3.58 26 1 ILE C 125 ? ? -126.75 -53.89 27 1 LEU C 128 ? ? 55.48 17.89 28 1 PRO C 130 ? ? -68.51 -175.47 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ALA C 76 ? ? ASN C 77 ? ? -117.16 2 1 ASN C 77 ? ? GLY C 78 ? ? 130.43 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ALA A 76 ? ? 12.47 2 1 ALA B 76 ? ? 12.01 3 1 ALA C 76 ? ? -21.48 # _pdbx_point_symmetry.entry_id 5KIP _pdbx_point_symmetry.Schoenflies_symbol I # _em_3d_reconstruction.entry_id 5KIP _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 51815 _em_3d_reconstruction.resolution 3.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'bacteriophage Q' _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 5KIP _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'JEOL 3200FSC' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification 30000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.specimen_holder_type ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.citation_id ? _em_imaging.detector_distance ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type C-flat-1.2/1.3 _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.citation_id ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate SPECIES _em_virus_entity.virus_type VIRION _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 295 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'Plunged into liquid ethane (FEI VITROBOT MARK III)' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK III' _em_vitrification.entry_id 5KIP _em_vitrification.temp ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? # _em_experiment.entry_id 5KIP _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A ARG 57 ? A ARG 58 3 1 Y 1 A ASN 58 ? A ASN 59 4 1 Y 1 A TYR 132 ? A TYR 133 5 1 Y 1 B MET 0 ? B MET 1 6 1 Y 1 C MET 0 ? C MET 1 7 1 Y 1 C ARG 57 ? C ARG 58 8 1 Y 1 C ASN 58 ? C ASN 59 9 1 Y 1 C TYR 132 ? C TYR 133 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 ILE N N N N 137 ILE CA C N S 138 ILE C C N N 139 ILE O O N N 140 ILE CB C N S 141 ILE CG1 C N N 142 ILE CG2 C N N 143 ILE CD1 C N N 144 ILE OXT O N N 145 ILE H H N N 146 ILE H2 H N N 147 ILE HA H N N 148 ILE HB H N N 149 ILE HG12 H N N 150 ILE HG13 H N N 151 ILE HG21 H N N 152 ILE HG22 H N N 153 ILE HG23 H N N 154 ILE HD11 H N N 155 ILE HD12 H N N 156 ILE HD13 H N N 157 ILE HXT H N N 158 LEU N N N N 159 LEU CA C N S 160 LEU C C N N 161 LEU O O N N 162 LEU CB C N N 163 LEU CG C N N 164 LEU CD1 C N N 165 LEU CD2 C N N 166 LEU OXT O N N 167 LEU H H N N 168 LEU H2 H N N 169 LEU HA H N N 170 LEU HB2 H N N 171 LEU HB3 H N N 172 LEU HG H N N 173 LEU HD11 H N N 174 LEU HD12 H N N 175 LEU HD13 H N N 176 LEU HD21 H N N 177 LEU HD22 H N N 178 LEU HD23 H N N 179 LEU HXT H N N 180 LYS N N N N 181 LYS CA C N S 182 LYS C C N N 183 LYS O O N N 184 LYS CB C N N 185 LYS CG C N N 186 LYS CD C N N 187 LYS CE C N N 188 LYS NZ N N N 189 LYS OXT O N N 190 LYS H H N N 191 LYS H2 H N N 192 LYS HA H N N 193 LYS HB2 H N N 194 LYS HB3 H N N 195 LYS HG2 H N N 196 LYS HG3 H N N 197 LYS HD2 H N N 198 LYS HD3 H N N 199 LYS HE2 H N N 200 LYS HE3 H N N 201 LYS HZ1 H N N 202 LYS HZ2 H N N 203 LYS HZ3 H N N 204 LYS HXT H N N 205 MET N N N N 206 MET CA C N S 207 MET C C N N 208 MET O O N N 209 MET CB C N N 210 MET CG C N N 211 MET SD S N N 212 MET CE C N N 213 MET OXT O N N 214 MET H H N N 215 MET H2 H N N 216 MET HA H N N 217 MET HB2 H N N 218 MET HB3 H N N 219 MET HG2 H N N 220 MET HG3 H N N 221 MET HE1 H N N 222 MET HE2 H N N 223 MET HE3 H N N 224 MET HXT H N N 225 PHE N N N N 226 PHE CA C N S 227 PHE C C N N 228 PHE O O N N 229 PHE CB C N N 230 PHE CG C Y N 231 PHE CD1 C Y N 232 PHE CD2 C Y N 233 PHE CE1 C Y N 234 PHE CE2 C Y N 235 PHE CZ C Y N 236 PHE OXT O N N 237 PHE H H N N 238 PHE H2 H N N 239 PHE HA H N N 240 PHE HB2 H N N 241 PHE HB3 H N N 242 PHE HD1 H N N 243 PHE HD2 H N N 244 PHE HE1 H N N 245 PHE HE2 H N N 246 PHE HZ H N N 247 PHE HXT H N N 248 PRO N N N N 249 PRO CA C N S 250 PRO C C N N 251 PRO O O N N 252 PRO CB C N N 253 PRO CG C N N 254 PRO CD C N N 255 PRO OXT O N N 256 PRO H H N N 257 PRO HA H N N 258 PRO HB2 H N N 259 PRO HB3 H N N 260 PRO HG2 H N N 261 PRO HG3 H N N 262 PRO HD2 H N N 263 PRO HD3 H N N 264 PRO HXT H N N 265 SER N N N N 266 SER CA C N S 267 SER C C N N 268 SER O O N N 269 SER CB C N N 270 SER OG O N N 271 SER OXT O N N 272 SER H H N N 273 SER H2 H N N 274 SER HA H N N 275 SER HB2 H N N 276 SER HB3 H N N 277 SER HG H N N 278 SER HXT H N N 279 THR N N N N 280 THR CA C N S 281 THR C C N N 282 THR O O N N 283 THR CB C N R 284 THR OG1 O N N 285 THR CG2 C N N 286 THR OXT O N N 287 THR H H N N 288 THR H2 H N N 289 THR HA H N N 290 THR HB H N N 291 THR HG1 H N N 292 THR HG21 H N N 293 THR HG22 H N N 294 THR HG23 H N N 295 THR HXT H N N 296 TYR N N N N 297 TYR CA C N S 298 TYR C C N N 299 TYR O O N N 300 TYR CB C N N 301 TYR CG C Y N 302 TYR CD1 C Y N 303 TYR CD2 C Y N 304 TYR CE1 C Y N 305 TYR CE2 C Y N 306 TYR CZ C Y N 307 TYR OH O N N 308 TYR OXT O N N 309 TYR H H N N 310 TYR H2 H N N 311 TYR HA H N N 312 TYR HB2 H N N 313 TYR HB3 H N N 314 TYR HD1 H N N 315 TYR HD2 H N N 316 TYR HE1 H N N 317 TYR HE2 H N N 318 TYR HH H N N 319 TYR HXT H N N 320 VAL N N N N 321 VAL CA C N S 322 VAL C C N N 323 VAL O O N N 324 VAL CB C N N 325 VAL CG1 C N N 326 VAL CG2 C N N 327 VAL OXT O N N 328 VAL H H N N 329 VAL H2 H N N 330 VAL HA H N N 331 VAL HB H N N 332 VAL HG11 H N N 333 VAL HG12 H N N 334 VAL HG13 H N N 335 VAL HG21 H N N 336 VAL HG22 H N N 337 VAL HG23 H N N 338 VAL HXT H N N 339 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 ILE N CA sing N N 129 ILE N H sing N N 130 ILE N H2 sing N N 131 ILE CA C sing N N 132 ILE CA CB sing N N 133 ILE CA HA sing N N 134 ILE C O doub N N 135 ILE C OXT sing N N 136 ILE CB CG1 sing N N 137 ILE CB CG2 sing N N 138 ILE CB HB sing N N 139 ILE CG1 CD1 sing N N 140 ILE CG1 HG12 sing N N 141 ILE CG1 HG13 sing N N 142 ILE CG2 HG21 sing N N 143 ILE CG2 HG22 sing N N 144 ILE CG2 HG23 sing N N 145 ILE CD1 HD11 sing N N 146 ILE CD1 HD12 sing N N 147 ILE CD1 HD13 sing N N 148 ILE OXT HXT sing N N 149 LEU N CA sing N N 150 LEU N H sing N N 151 LEU N H2 sing N N 152 LEU CA C sing N N 153 LEU CA CB sing N N 154 LEU CA HA sing N N 155 LEU C O doub N N 156 LEU C OXT sing N N 157 LEU CB CG sing N N 158 LEU CB HB2 sing N N 159 LEU CB HB3 sing N N 160 LEU CG CD1 sing N N 161 LEU CG CD2 sing N N 162 LEU CG HG sing N N 163 LEU CD1 HD11 sing N N 164 LEU CD1 HD12 sing N N 165 LEU CD1 HD13 sing N N 166 LEU CD2 HD21 sing N N 167 LEU CD2 HD22 sing N N 168 LEU CD2 HD23 sing N N 169 LEU OXT HXT sing N N 170 LYS N CA sing N N 171 LYS N H sing N N 172 LYS N H2 sing N N 173 LYS CA C sing N N 174 LYS CA CB sing N N 175 LYS CA HA sing N N 176 LYS C O doub N N 177 LYS C OXT sing N N 178 LYS CB CG sing N N 179 LYS CB HB2 sing N N 180 LYS CB HB3 sing N N 181 LYS CG CD sing N N 182 LYS CG HG2 sing N N 183 LYS CG HG3 sing N N 184 LYS CD CE sing N N 185 LYS CD HD2 sing N N 186 LYS CD HD3 sing N N 187 LYS CE NZ sing N N 188 LYS CE HE2 sing N N 189 LYS CE HE3 sing N N 190 LYS NZ HZ1 sing N N 191 LYS NZ HZ2 sing N N 192 LYS NZ HZ3 sing N N 193 LYS OXT HXT sing N N 194 MET N CA sing N N 195 MET N H sing N N 196 MET N H2 sing N N 197 MET CA C sing N N 198 MET CA CB sing N N 199 MET CA HA sing N N 200 MET C O doub N N 201 MET C OXT sing N N 202 MET CB CG sing N N 203 MET CB HB2 sing N N 204 MET CB HB3 sing N N 205 MET CG SD sing N N 206 MET CG HG2 sing N N 207 MET CG HG3 sing N N 208 MET SD CE sing N N 209 MET CE HE1 sing N N 210 MET CE HE2 sing N N 211 MET CE HE3 sing N N 212 MET OXT HXT sing N N 213 PHE N CA sing N N 214 PHE N H sing N N 215 PHE N H2 sing N N 216 PHE CA C sing N N 217 PHE CA CB sing N N 218 PHE CA HA sing N N 219 PHE C O doub N N 220 PHE C OXT sing N N 221 PHE CB CG sing N N 222 PHE CB HB2 sing N N 223 PHE CB HB3 sing N N 224 PHE CG CD1 doub Y N 225 PHE CG CD2 sing Y N 226 PHE CD1 CE1 sing Y N 227 PHE CD1 HD1 sing N N 228 PHE CD2 CE2 doub Y N 229 PHE CD2 HD2 sing N N 230 PHE CE1 CZ doub Y N 231 PHE CE1 HE1 sing N N 232 PHE CE2 CZ sing Y N 233 PHE CE2 HE2 sing N N 234 PHE CZ HZ sing N N 235 PHE OXT HXT sing N N 236 PRO N CA sing N N 237 PRO N CD sing N N 238 PRO N H sing N N 239 PRO CA C sing N N 240 PRO CA CB sing N N 241 PRO CA HA sing N N 242 PRO C O doub N N 243 PRO C OXT sing N N 244 PRO CB CG sing N N 245 PRO CB HB2 sing N N 246 PRO CB HB3 sing N N 247 PRO CG CD sing N N 248 PRO CG HG2 sing N N 249 PRO CG HG3 sing N N 250 PRO CD HD2 sing N N 251 PRO CD HD3 sing N N 252 PRO OXT HXT sing N N 253 SER N CA sing N N 254 SER N H sing N N 255 SER N H2 sing N N 256 SER CA C sing N N 257 SER CA CB sing N N 258 SER CA HA sing N N 259 SER C O doub N N 260 SER C OXT sing N N 261 SER CB OG sing N N 262 SER CB HB2 sing N N 263 SER CB HB3 sing N N 264 SER OG HG sing N N 265 SER OXT HXT sing N N 266 THR N CA sing N N 267 THR N H sing N N 268 THR N H2 sing N N 269 THR CA C sing N N 270 THR CA CB sing N N 271 THR CA HA sing N N 272 THR C O doub N N 273 THR C OXT sing N N 274 THR CB OG1 sing N N 275 THR CB CG2 sing N N 276 THR CB HB sing N N 277 THR OG1 HG1 sing N N 278 THR CG2 HG21 sing N N 279 THR CG2 HG22 sing N N 280 THR CG2 HG23 sing N N 281 THR OXT HXT sing N N 282 TYR N CA sing N N 283 TYR N H sing N N 284 TYR N H2 sing N N 285 TYR CA C sing N N 286 TYR CA CB sing N N 287 TYR CA HA sing N N 288 TYR C O doub N N 289 TYR C OXT sing N N 290 TYR CB CG sing N N 291 TYR CB HB2 sing N N 292 TYR CB HB3 sing N N 293 TYR CG CD1 doub Y N 294 TYR CG CD2 sing Y N 295 TYR CD1 CE1 sing Y N 296 TYR CD1 HD1 sing N N 297 TYR CD2 CE2 doub Y N 298 TYR CD2 HD2 sing N N 299 TYR CE1 CZ doub Y N 300 TYR CE1 HE1 sing N N 301 TYR CE2 CZ sing Y N 302 TYR CE2 HE2 sing N N 303 TYR CZ OH sing N N 304 TYR OH HH sing N N 305 TYR OXT HXT sing N N 306 VAL N CA sing N N 307 VAL N H sing N N 308 VAL N H2 sing N N 309 VAL CA C sing N N 310 VAL CA CB sing N N 311 VAL CA HA sing N N 312 VAL C O doub N N 313 VAL C OXT sing N N 314 VAL CB CG1 sing N N 315 VAL CB CG2 sing N N 316 VAL CB HB sing N N 317 VAL CG1 HG11 sing N N 318 VAL CG1 HG12 sing N N 319 VAL CG1 HG13 sing N N 320 VAL CG2 HG21 sing N N 321 VAL CG2 HG22 sing N N 322 VAL CG2 HG23 sing N N 323 VAL OXT HXT sing N N 324 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 39803 _em_entity_assembly_naturalsource.organ . _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Enterobacteria phage Qbeta' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time 10 _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? EMAN ? 1 ? ? 2 'IMAGE ACQUISITION' ? SerialEM ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4 1 ? ? 5 'CTF CORRECTION' ? Gctf ? 1 ? ? 6 'LAYERLINE INDEXING' ? ? ? ? ? ? 7 'DIFFRACTION INDEXING' ? ? ? ? ? ? 8 'MODEL FITTING' ? 'UCSF Chimera' ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? RELION 1.4 1 ? ? 14 'VOLUME SELECTION' ? ? ? 1 ? 1 15 'SERIES ALIGNMENT' ? ? ? 1 ? 1 16 'MOLECULAR REPLACEMENT' ? ? ? 1 ? 1 17 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? 1 18 'SYMMETRY DETERMINATION' ? ? ? 1 ? 1 19 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? 1 20 'MODEL REFINEMENT' ? PHENIX ? ? ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Welch Foundation' 'United States' A-1863 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' P41GM103832 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM27099 3 # _atom_sites.entry_id 5KIP _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_