HEADER VIRAL PROTEIN/IMMUNE SYSTEM/INHIBITOR 20-JUN-16 5KJR TITLE CRYSTAL STRUCTURE OF THE ADCC-POTENT ANTIBODY N60-I3 FAB IN COMPLEX TITLE 2 WITH HIV-1 CLADE A/E GP120 W69A/S115W MUTANT AND M48U1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLADE A/E 93TH057 HIV-1 GP120 CORE; COMPND 3 CHAIN: G; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: M48U1 CD4 MIMETIC PEPTIDE; COMPND 8 CHAIN: N; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: N60-I3 FAB HEAVY CHAIN; COMPND 12 CHAIN: H; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: N60-I3 FAB LIGHT CHAIN; COMPND 16 CHAIN: L; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: HIV-1 ENV; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 GNT1- CELLS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: FAB HEAVY CHAIN OF ADCC-POTENT ANTI-HIV-1 ANTIBODY N60-I3; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 CELLS; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 GENE: FAB LIGHT CHAIN OF ADCC-POTENT ANTI-HIV-1 ANTIBODY N60-I3; SOURCE 25 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 27 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 CELLS; SOURCE 28 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HIV-1 GP120, CLADE A/E 93TH057, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE KEYWDS 2 SYSTEM-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.D.TOLBERT,M.PAZGIER REVDAT 8 15-NOV-23 5KJR 1 REMARK REVDAT 7 27-SEP-23 5KJR 1 HETSYN REVDAT 6 29-JUL-20 5KJR 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE REVDAT 5 11-DEC-19 5KJR 1 REMARK REVDAT 4 13-SEP-17 5KJR 1 REMARK REVDAT 3 26-OCT-16 5KJR 1 REMARK REVDAT 2 21-SEP-16 5KJR 1 JRNL REVDAT 1 20-JUL-16 5KJR 0 JRNL AUTH S.DING,W.D.TOLBERT,J.PREVOST,B.PACHECO,M.COUTU,O.DEBBECHE, JRNL AUTH 2 S.H.XIANG,M.PAZGIER,A.FINZI JRNL TITL A HIGHLY CONSERVED GP120 INNER DOMAIN RESIDUE MODULATES ENV JRNL TITL 2 CONFORMATION AND TRIMER STABILITY. JRNL REF J.VIROL. V. 90 8395 2016 JRNL REFN ESSN 1098-5514 JRNL PMID 27384653 JRNL DOI 10.1128/JVI.01068-16 REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 3 NUMBER OF REFLECTIONS : 18481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1157 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 148 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.03000 REMARK 3 B22 (A**2) : -0.63000 REMARK 3 B33 (A**2) : 2.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.562 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.586 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 72.387 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.885 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.807 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6358 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5877 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8654 ; 1.981 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13605 ; 1.219 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 778 ; 8.232 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;36.653 ;25.102 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1002 ;22.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.018 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 999 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7060 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1368 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3152 ; 1.249 ; 3.096 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3151 ; 1.249 ; 3.096 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3913 ; 2.211 ; 4.629 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3914 ; 2.211 ; 4.630 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3206 ; 1.344 ; 3.309 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3207 ; 1.344 ; 3.310 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4742 ; 2.257 ; 4.920 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 25707 ; 6.503 ;29.742 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 25708 ; 6.502 ;29.743 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 44 G 492 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5340 11.6574 58.9339 REMARK 3 T TENSOR REMARK 3 T11: 0.3465 T22: 0.0443 REMARK 3 T33: 0.1155 T12: -0.0207 REMARK 3 T13: 0.0383 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.1344 L22: 1.3864 REMARK 3 L33: 1.7893 L12: -0.1353 REMARK 3 L13: -0.0690 L23: 0.7820 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: -0.0308 S13: 0.2978 REMARK 3 S21: 0.1791 S22: 0.0053 S23: 0.1919 REMARK 3 S31: -0.1419 S32: -0.1338 S33: 0.0159 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 214 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0802 -12.2948 12.2629 REMARK 3 T TENSOR REMARK 3 T11: 0.4456 T22: 0.0160 REMARK 3 T33: 0.0290 T12: 0.0012 REMARK 3 T13: -0.0175 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.9545 L22: 0.5944 REMARK 3 L33: 1.4691 L12: -0.2836 REMARK 3 L13: -1.0116 L23: 0.7505 REMARK 3 S TENSOR REMARK 3 S11: -0.1647 S12: 0.0908 S13: -0.1474 REMARK 3 S21: 0.0986 S22: 0.0353 S23: 0.0095 REMARK 3 S31: 0.2081 S32: -0.0435 S33: 0.1293 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 208 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8272 1.4396 4.5244 REMARK 3 T TENSOR REMARK 3 T11: 0.3939 T22: 0.0539 REMARK 3 T33: 0.0691 T12: -0.0269 REMARK 3 T13: -0.0362 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.2812 L22: 0.7365 REMARK 3 L33: 1.1480 L12: -0.1649 REMARK 3 L13: -0.3500 L23: 0.4895 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: 0.0939 S13: 0.0238 REMARK 3 S21: -0.1546 S22: -0.0061 S23: -0.1214 REMARK 3 S31: -0.1760 S32: 0.0044 S33: -0.0446 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19540 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.22000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.67600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RFO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-16% PEG 8000, 0.1 M TRIS-HCL PH REMARK 280 8.5, 65 MM NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.59550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.97200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.59550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.97200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, N, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE CD4-MIMETIC MINIPROTEINS INHIBIT HIV-1 ENTRY AND ARE DERIVED REMARK 400 FROM SCYLLATOXIN (A SCORPION TOXIN) BY TRANSPLANTING THE GP120- REMARK 400 INTERACTIVE REGION OF CD4 ONTO THE SCYLLATOXIN SCAFFOLD, FOLLOWED REMARK 400 BY MANY ROUNDS OF ITERATIVE OPTIMIZATION REMARK 400 REMARK 400 THE CD4-MIMETIC MINIPROTEIN M48U1 IS PEPTIDE-LIKE, A MEMBER OF REMARK 400 INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: CD4-MIMETIC MINIPROTEIN M48U1 REMARK 400 CHAIN: N REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS G 194 REMARK 465 LEU G 195 REMARK 465 THR G 196 REMARK 465 GLY G 197 REMARK 465 GLY G 198 REMARK 465 SER G 199 REMARK 465 VAL G 200 REMARK 465 ILE G 201 REMARK 465 ASN G 317 REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 GLY G 324 REMARK 465 GLY G 403 REMARK 465 ASN G 404 REMARK 465 GLU G 405 REMARK 465 THR G 406 REMARK 465 MET G 407 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 THR L -4 REMARK 465 GLY L -3 REMARK 465 VAL L -2 REMARK 465 LEU L -1 REMARK 465 SER L 0 REMARK 465 THR L 209 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP G 107 NH1 ARG H 99 1.92 REMARK 500 O TYR H 100C OH TYR L 36 1.99 REMARK 500 O PRO G 363 NH1 ARG G 469 1.99 REMARK 500 NH1 ARG G 298 O GLY G 441 2.09 REMARK 500 NE2 GLN L 194 OE2 GLU L 203 2.10 REMARK 500 OG SER H 35B OD1 ASN H 50 2.13 REMARK 500 O VAL G 345 N LYS G 348 2.14 REMARK 500 OD1 ASN G 334 OG1 THR G 336 2.16 REMARK 500 NH2 ARG G 298 O ILE G 439 2.17 REMARK 500 OD1 ASP G 368 NH2 ARG N 9 2.18 REMARK 500 O PHE G 233 NH1 ARG G 273 2.18 REMARK 500 O GLU G 370 OG SER G 375 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU G 87 CG GLU G 87 CD 0.133 REMARK 500 GLU G 87 CD GLU G 87 OE2 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS G 74 CA - CB - SG ANGL. DEV. = -11.7 DEGREES REMARK 500 CYS G 228 CA - CB - SG ANGL. DEV. = -22.6 DEGREES REMARK 500 CYS G 410 CA - CB - SG ANGL. DEV. = 9.2 DEGREES REMARK 500 THR N 22 CA - C - N ANGL. DEV. = 13.2 DEGREES REMARK 500 THR N 22 O - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 U2X N 23 C - N - CA ANGL. DEV. = 22.5 DEGREES REMARK 500 CYS H 196 CA - CB - SG ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA G 60 -87.01 -35.76 REMARK 500 ALA G 73 -16.40 71.63 REMARK 500 ASN G 80 76.37 -117.57 REMARK 500 GLU G 87 -140.30 32.83 REMARK 500 ASN G 94 101.79 163.66 REMARK 500 GLN G 114 -25.60 161.66 REMARK 500 TRP G 115 40.96 -145.44 REMARK 500 LEU G 116 63.25 -177.16 REMARK 500 CYS G 119 65.84 -67.20 REMARK 500 ALA G 204 127.17 114.44 REMARK 500 CYS G 205 55.26 -95.60 REMARK 500 PRO G 206 131.79 -39.89 REMARK 500 SER G 209 134.71 -25.43 REMARK 500 LYS G 231 -64.46 44.94 REMARK 500 ASN G 232 72.40 -100.21 REMARK 500 LYS G 240 -44.38 92.83 REMARK 500 ASN G 241 69.14 -101.69 REMARK 500 HIS G 249 173.18 -59.57 REMARK 500 GLN G 258 -69.16 73.84 REMARK 500 ASN G 262 54.35 -2.38 REMARK 500 GLU G 268 -108.26 -124.83 REMARK 500 GLU G 269 -158.98 -70.65 REMARK 500 ASN G 276 88.90 171.54 REMARK 500 ASN G 280 -25.40 -39.70 REMARK 500 PRO G 299 -152.35 -74.48 REMARK 500 ILE G 326 2.75 -48.57 REMARK 500 TYR G 330 143.18 -173.59 REMARK 500 THR G 336 -56.81 -26.57 REMARK 500 VAL G 345 -90.81 -64.49 REMARK 500 THR G 346 -54.01 -11.99 REMARK 500 ASN G 354 44.88 30.68 REMARK 500 ASN G 355 12.36 49.82 REMARK 500 ARG G 379 30.73 36.74 REMARK 500 THR G 388 -35.42 -35.03 REMARK 500 ASN G 393 -123.59 -64.08 REMARK 500 THR G 394 -67.63 22.59 REMARK 500 CYS G 395 96.27 -59.05 REMARK 500 CYS G 410 -110.70 -136.54 REMARK 500 THR G 413 -175.93 -61.86 REMARK 500 PRO G 417 -75.12 -55.46 REMARK 500 CYS G 418 121.05 61.50 REMARK 500 GLN G 428 -96.72 -68.26 REMARK 500 ALA G 433 130.70 -178.17 REMARK 500 PRO G 438 -158.52 -62.76 REMARK 500 ASN G 444 90.26 -160.24 REMARK 500 ALA G 460 -119.41 -70.78 REMARK 500 ASN G 461 -56.08 -161.03 REMARK 500 ASN G 462 -164.42 60.39 REMARK 500 THR G 463 23.40 46.37 REMARK 500 SER G 464 -30.88 67.06 REMARK 500 REMARK 500 THIS ENTRY HAS 118 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY G 409 CYS G 410 -141.16 REMARK 500 ASN G 462 THR G 463 -144.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR N 22 11.57 REMARK 500 U2X N 23 -25.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RFO RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE WITHOUT GP120 MUTATIONS W69A AND S115W. DBREF1 5KJR G 44 492 UNP A0A0M3KKW9_9HIV1 DBREF2 5KJR G A0A0M3KKW9 1 353 DBREF 5KJR N 1 28 PDB 5KJR 5KJR 1 28 DBREF 5KJR H 1 220 PDB 5KJR 5KJR 1 220 DBREF 5KJR L -4 212 PDB 5KJR 5KJR -4 212 SEQADV 5KJR ALA G 69 UNP A0A0M3KKW TRP 26 ENGINEERED MUTATION SEQADV 5KJR TRP G 115 UNP A0A0M3KKW SER 72 ENGINEERED MUTATION SEQADV 5KJR SER G 375 UNP A0A0M3KKW HIS 242 ENGINEERED MUTATION SEQRES 1 G 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 G 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL ALA SEQRES 3 G 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 G 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 G 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 G 353 ILE SER LEU TRP ASP GLN TRP LEU GLN PRO CYS VAL LYS SEQRES 7 G 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 G 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 G 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 G 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 G 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 G 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 G 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 G 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 G 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 G 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 G 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 G 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 G 353 ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS ARG GLY SEQRES 20 G 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 G 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 G 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 G 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 G 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 G 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 G 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 G 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 G 353 ILE GLU SEQRES 1 N 28 MPT ASN LEU HIS PHE CYS GLN LEU ARG CYS LYS SER LEU SEQRES 2 N 28 GLY LEU LEU GLY ARG CYS ALA DPR THR U2X CYS ALA CYS SEQRES 3 N 28 VAL NH2 SEQRES 1 H 229 GLU VAL GLN LEU VAL GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 229 PRO SER GLN THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 229 ALA SER ILE SER SER GLY GLY TYR PHE TRP SER TRP ILE SEQRES 4 H 229 ARG GLN HIS PRO GLY LYS GLY LEU GLU TRP ILE GLY ASN SEQRES 5 H 229 ILE TYR TYR ILE GLY ASN THR TYR TYR ASN PRO SER LEU SEQRES 6 H 229 LYS SER ARG LEU THR ILE SER VAL ASP THR THR GLN ASN SEQRES 7 H 229 GLN PHE SER LEU LYS LEU THR SER VAL THR ALA ALA ASP SEQRES 8 H 229 THR ALA VAL TYR TYR CYS ALA ARG VAL PRO ARG LEU ARG SEQRES 9 H 229 GLY GLY ASN TYR PHE ASP SER TRP GLY GLN GLY THR LEU SEQRES 10 H 229 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 229 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 229 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 229 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 229 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 229 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 229 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 229 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 H 229 PRO LYS SER CYS ASP LYS THR HIS SEQRES 1 L 221 THR GLY VAL LEU SER GLN SER VAL LEU THR GLN PRO ALA SEQRES 2 L 221 SER VAL SER GLY SER PRO GLY GLN SER ILE THR ILE SER SEQRES 3 L 221 CYS THR GLY THR SER SER ASP VAL GLY GLY TYR LYS TYR SEQRES 4 L 221 VAL SER TRP TYR GLN GLN HIS PRO ASP LYS ALA PRO LYS SEQRES 5 L 221 LEU MET ILE TYR GLU VAL SER ASN ARG PRO SER GLY VAL SEQRES 6 L 221 SER ASN ARG PHE SER GLY SER LYS SER GLY ASN THR ALA SEQRES 7 L 221 SER LEU THR ILE SER GLY LEU GLN ALA GLU ASP GLU ALA SEQRES 8 L 221 ASP TYR TYR CYS SER SER TYR THR SER SER SER THR TRP SEQRES 9 L 221 VAL PHE GLY GLY GLY THR LYS LEU THR VAL LEU GLY GLN SEQRES 10 L 221 PRO LYS ALA ALA PRO SER VAL THR LEU PHE PRO PRO SER SEQRES 11 L 221 SER GLU GLU LEU GLN ALA ASN LYS ALA THR LEU VAL CYS SEQRES 12 L 221 LEU ILE SER ASP PHE TYR PRO GLY ALA VAL THR VAL ALA SEQRES 13 L 221 TRP LYS ALA ASP SER SER PRO VAL LYS ALA GLY VAL GLU SEQRES 14 L 221 THR THR THR PRO SER LYS GLN SER ASN ASN LYS TYR ALA SEQRES 15 L 221 ALA SER SER TYR LEU SER LEU THR PRO GLU GLN TRP LYS SEQRES 16 L 221 SER HIS ARG SER TYR SER CYS GLN VAL THR HIS GLU GLY SEQRES 17 L 221 SER THR VAL GLU LYS THR VAL ALA PRO THR GLU CYS SER HET MPT N 1 5 HET DPR N 21 7 HET U2X N 23 19 HET NH2 N 28 1 HET NAG G 501 14 HET NAG G 502 14 HET NAG G 503 14 HET NAG G 504 14 HET NAG G 505 14 HET NAG G 506 14 HET NAG G 507 14 HET NAG G 508 14 HET NAG G 509 14 HET NAG G 510 14 HET MPD L 301 8 HETNAM MPT BETA-MERCAPTOPROPIONIC ACID HETNAM DPR D-PROLINE HETNAM U2X O-(CYCLOHEXYLMETHYL)-L-TYROSINE HETNAM NH2 AMINO GROUP HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 MPT C3 H6 O2 S FORMUL 2 DPR C5 H9 N O2 FORMUL 2 U2X C16 H23 N O3 FORMUL 2 NH2 H2 N FORMUL 5 NAG 10(C8 H15 N O6) FORMUL 15 MPD C6 H14 O2 FORMUL 16 HOH *9(H2 O) HELIX 1 AA1 GLU G 64 THR G 71 1 8 HELIX 2 AA2 ASN G 99 ASP G 113 1 15 HELIX 3 AA3 ASN G 334 PHE G 353 1 20 HELIX 4 AA4 ASP G 368 MET G 373 1 6 HELIX 5 AA5 THR G 387 PHE G 391 5 5 HELIX 6 AA6 ASN G 474 SER G 481 1 8 HELIX 7 AA7 ASN N 2 SER N 12 1 11 HELIX 8 AA8 THR H 83 THR H 87 5 5 HELIX 9 AA9 TRP H 154 ALA H 158 5 5 HELIX 10 AB1 SER L 121 GLN L 126 1 6 HELIX 11 AB2 THR L 181 SER L 187 1 7 SHEET 1 AA1 5 LYS G 46 ASP G 47 0 SHEET 2 AA1 5 VAL G 488 GLN G 490 -1 O GLN G 490 N LYS G 46 SHEET 3 AA1 5 TYR G 223 CYS G 228 -1 N VAL G 224 O VAL G 489 SHEET 4 AA1 5 VAL G 242 VAL G 245 -1 O SER G 243 N LYS G 227 SHEET 5 AA1 5 GLU G 83 HIS G 85 -1 N ILE G 84 O SER G 244 SHEET 1 AA2 3 CYS G 74 VAL G 75 0 SHEET 2 AA2 3 PHE G 53 SER G 56 1 N CYS G 54 O VAL G 75 SHEET 3 AA2 3 ILE G 215 CYS G 218 -1 O HIS G 216 N ALA G 55 SHEET 1 AA3 2 ASN G 92 ASN G 94 0 SHEET 2 AA3 2 THR G 236 PRO G 238 -1 O GLY G 237 N PHE G 93 SHEET 1 AA4 5 LEU G 259 LEU G 260 0 SHEET 2 AA4 5 ILE G 443 ARG G 456 -1 O GLY G 451 N LEU G 260 SHEET 3 AA4 5 ILE G 284 ARG G 298 -1 N ILE G 284 O LEU G 454 SHEET 4 AA4 5 ASN G 465 PRO G 470 0 SHEET 5 AA4 5 THR G 358 PHE G 361 1 N THR G 358 O GLU G 466 SHEET 1 AA5 5 ILE G 271 ARG G 273 0 SHEET 2 AA5 5 ILE G 284 ARG G 298 -1 O ILE G 285 N ARG G 273 SHEET 3 AA5 5 ILE G 443 ARG G 456 -1 O LEU G 454 N ILE G 284 SHEET 4 AA5 5 TYR G 330 ILE G 333 0 SHEET 5 AA5 5 ILE G 414 LEU G 416 -1 O LEU G 416 N CYS G 331 SHEET 1 AA6 2 HIS G 374 CYS G 378 0 SHEET 2 AA6 2 GLU G 381 CYS G 385 -1 O GLU G 381 N CYS G 378 SHEET 1 AA7 2 LEU N 16 ALA N 20 0 SHEET 2 AA7 2 U2X N 23 VAL N 27 -1 O VAL N 27 N LEU N 16 SHEET 1 AA8 4 VAL H 5 SER H 7 0 SHEET 2 AA8 4 LEU H 18 THR H 23 -1 O THR H 23 N VAL H 5 SHEET 3 AA8 4 GLN H 75 LEU H 82 -1 O PHE H 78 N CYS H 22 SHEET 4 AA8 4 LEU H 67 ASP H 72 -1 N ASP H 72 O GLN H 75 SHEET 1 AA9 6 LEU H 11 VAL H 12 0 SHEET 2 AA9 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA9 6 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 107 SHEET 4 AA9 6 TRP H 35A GLN H 39 -1 N SER H 35B O ALA H 93 SHEET 5 AA9 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA9 6 THR H 57 TYR H 59 -1 O TYR H 58 N ASN H 50 SHEET 1 AB1 4 LEU H 11 VAL H 12 0 SHEET 2 AB1 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AB1 4 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 107 SHEET 4 AB1 4 ASP H 101 TRP H 103 -1 O ASP H 101 N ARG H 94 SHEET 1 AB2 4 SER H 120 LEU H 124 0 SHEET 2 AB2 4 ALA H 136 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AB2 4 TYR H 176 VAL H 184 -1 O LEU H 178 N VAL H 142 SHEET 4 AB2 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB3 4 SER H 120 LEU H 124 0 SHEET 2 AB3 4 ALA H 136 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AB3 4 TYR H 176 VAL H 184 -1 O LEU H 178 N VAL H 142 SHEET 4 AB3 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB4 3 VAL H 150 VAL H 152 0 SHEET 2 AB4 3 VAL H 198 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AB4 3 THR H 205 VAL H 207 -1 O VAL H 207 N VAL H 198 SHEET 1 AB5 2 TYR H 194 ILE H 195 0 SHEET 2 AB5 2 ARG H 210 VAL H 211 -1 O VAL H 211 N TYR H 194 SHEET 1 AB6 5 SER L 12 GLY L 13 0 SHEET 2 AB6 5 THR L 102 VAL L 106 1 O THR L 105 N GLY L 13 SHEET 3 AB6 5 ALA L 84 TYR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AB6 5 VAL L 33 GLN L 37 -1 N SER L 34 O SER L 89 SHEET 5 AB6 5 LYS L 45 ILE L 48 -1 O LYS L 45 N GLN L 37 SHEET 1 AB7 4 SER L 12 GLY L 13 0 SHEET 2 AB7 4 THR L 102 VAL L 106 1 O THR L 105 N GLY L 13 SHEET 3 AB7 4 ALA L 84 TYR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AB7 4 TRP L 96 PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AB8 3 SER L 18 THR L 24 0 SHEET 2 AB8 3 THR L 70 SER L 76 -1 O ALA L 71 N CYS L 23 SHEET 3 AB8 3 PHE L 62 SER L 67 -1 N SER L 67 O THR L 70 SHEET 1 AB9 4 SER L 114 PHE L 118 0 SHEET 2 AB9 4 LEU L 132 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 AB9 4 TYR L 172 LEU L 178 -1 O LEU L 178 N LEU L 132 SHEET 4 AB9 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AC1 3 THR L 145 ALA L 150 0 SHEET 2 AC1 3 TYR L 191 HIS L 197 -1 O SER L 192 N LYS L 149 SHEET 3 AC1 3 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS G 54 CYS G 74 1555 1555 1.95 SSBOND 2 CYS G 119 CYS G 205 1555 1555 2.06 SSBOND 3 CYS G 218 CYS G 247 1555 1555 2.05 SSBOND 4 CYS G 228 CYS G 239 1555 1555 1.97 SSBOND 5 CYS G 296 CYS G 331 1555 1555 2.01 SSBOND 6 CYS G 378 CYS G 445 1555 1555 2.05 SSBOND 7 CYS G 385 CYS G 418 1555 1555 1.98 SSBOND 8 CYS G 395 CYS G 410 1555 1555 2.04 SSBOND 9 MPT N 1 CYS N 19 1555 1555 2.05 SSBOND 10 CYS N 6 CYS N 24 1555 1555 2.02 SSBOND 11 CYS N 10 CYS N 26 1555 1555 2.02 SSBOND 12 CYS H 22 CYS H 92 1555 1555 2.00 SSBOND 13 CYS H 140 CYS H 196 1555 1555 1.97 SSBOND 14 CYS L 23 CYS L 88 1555 1555 1.97 SSBOND 15 CYS L 134 CYS L 193 1555 1555 2.03 LINK ND2 ASN G 234 C1 NAG G 501 1555 1555 1.43 LINK ND2 ASN G 241 C1 NAG G 502 1555 1555 1.47 LINK ND2 ASN G 262 C1 NAG G 503 1555 1555 1.43 LINK ND2 ASN G 276 C1 NAG G 504 1555 1555 1.44 LINK ND2 ASN G 289 C1 NAG G 505 1555 1555 1.44 LINK ND2 ASN G 295 C1 NAG G 506 1555 1555 1.46 LINK ND2 ASN G 334 C1 NAG G 507 1555 1555 1.43 LINK ND2 ASN G 386 C1 NAG G 508 1555 1555 1.42 LINK ND2 ASN G 392 C1 NAG G 509 1555 1555 1.51 LINK ND2 ASN G 461 C1 NAG G 510 1555 1555 1.43 LINK C MPT N 1 N ASN N 2 1555 1555 1.29 LINK C ALA N 20 N DPR N 21 1555 1555 1.35 LINK C DPR N 21 N THR N 22 1555 1555 1.33 LINK C THR N 22 N U2X N 23 1555 1555 1.26 LINK C U2X N 23 N CYS N 24 1555 1555 1.31 LINK C VAL N 27 N NH2 N 28 1555 1555 1.28 CISPEP 1 ASN G 461 ASN G 462 0 17.67 CISPEP 2 ALA H 27 SER H 28 0 0.03 CISPEP 3 GLY H 32 GLY H 33 0 3.76 CISPEP 4 VAL H 95 PRO H 96 0 1.56 CISPEP 5 PHE H 146 PRO H 147 0 -4.18 CISPEP 6 GLU H 148 PRO H 149 0 3.74 CISPEP 7 VAL H 211 GLU H 212 0 19.53 CISPEP 8 GLY L 28 GLY L 29 0 10.18 CISPEP 9 PRO L 40 ASP L 41 0 -6.09 CISPEP 10 SER L 93 SER L 94 0 -3.45 CISPEP 11 TYR L 140 PRO L 141 0 -16.04 CISPEP 12 GLY L 142 ALA L 143 0 22.86 CISPEP 13 SER L 152 SER L 153 0 6.64 CISPEP 14 LYS L 156 ALA L 157 0 6.08 CISPEP 15 ALA L 157 GLY L 158 0 -14.44 CRYST1 95.191 101.944 108.747 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009196 0.00000