HEADER ELECTRON TRANSPORT 21-JUN-16 5KKE TITLE CRYSTAL STRUCTURE OF A DOMAIN-SWAPPED DIMER OF YEAST ISO-1-CYTOCHROME TITLE 2 C WITH CYMAL5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: CYC1, YJR048W, J1653; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ELECTRON TRANSPORT APOPTOSIS LIPID BINDING, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR B.E.BOWLER,F.G.WHITBY REVDAT 2 10-MAR-21 5KKE 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 22-MAR-17 5KKE 0 JRNL AUTH L.J.MCCLELLAND,H.B.STEELE,F.G.WHITBY,T.C.MOU,D.HOLLEY, JRNL AUTH 2 J.B.ROSS,S.R.SPRANG,B.E.BOWLER JRNL TITL CYTOCHROME C CAN FORM A WELL-DEFINED BINDING POCKET FOR JRNL TITL 2 HYDROCARBONS. JRNL REF J. AM. CHEM. SOC. V. 138 16770 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27990813 JRNL DOI 10.1021/JACS.6B10745 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.9847 - 4.5325 1.00 1266 142 0.1703 0.1744 REMARK 3 2 4.5325 - 3.6003 1.00 1277 139 0.1428 0.1717 REMARK 3 3 3.6003 - 3.1460 1.00 1243 137 0.1705 0.2160 REMARK 3 4 3.1460 - 2.8587 1.00 1272 148 0.1770 0.2414 REMARK 3 5 2.8587 - 2.6540 1.00 1237 145 0.1841 0.1953 REMARK 3 6 2.6540 - 2.4976 1.00 1283 133 0.1645 0.1988 REMARK 3 7 2.4976 - 2.3726 1.00 1242 138 0.1664 0.2245 REMARK 3 8 2.3726 - 2.2694 1.00 1285 138 0.1677 0.1884 REMARK 3 9 2.2694 - 2.1821 1.00 1262 133 0.1643 0.2149 REMARK 3 10 2.1821 - 2.1068 1.00 1244 165 0.1640 0.1912 REMARK 3 11 2.1068 - 2.0409 1.00 1256 133 0.1596 0.2194 REMARK 3 12 2.0409 - 1.9826 1.00 1249 130 0.1700 0.2028 REMARK 3 13 1.9826 - 1.9304 1.00 1238 150 0.1737 0.2119 REMARK 3 14 1.9304 - 1.8834 1.00 1291 146 0.1845 0.2266 REMARK 3 15 1.8834 - 1.8405 1.00 1266 123 0.1963 0.2486 REMARK 3 16 1.8405 - 1.8014 1.00 1235 154 0.2205 0.2846 REMARK 3 17 1.8014 - 1.7654 1.00 1266 132 0.2168 0.2526 REMARK 3 18 1.7654 - 1.7321 1.00 1253 134 0.2520 0.2772 REMARK 3 19 1.7321 - 1.7011 0.98 1236 134 0.3433 0.4062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1038 REMARK 3 ANGLE : 1.040 1411 REMARK 3 CHIRALITY : 0.051 148 REMARK 3 PLANARITY : 0.006 165 REMARK 3 DIHEDRAL : 19.742 579 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -4:1) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3709 15.5484 85.2646 REMARK 3 T TENSOR REMARK 3 T11: 0.5614 T22: 0.8870 REMARK 3 T33: 0.6193 T12: -0.0976 REMARK 3 T13: 0.0789 T23: -0.1427 REMARK 3 L TENSOR REMARK 3 L11: 6.1127 L22: 6.2593 REMARK 3 L33: 4.6570 L12: -5.3941 REMARK 3 L13: 3.6668 L23: -4.8987 REMARK 3 S TENSOR REMARK 3 S11: 0.4465 S12: 2.0866 S13: -0.5076 REMARK 3 S21: -0.1378 S22: -0.8928 S23: -1.0075 REMARK 3 S31: 0.2024 S32: 1.8136 S33: 0.4768 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 2:15) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6710 17.7963 85.0655 REMARK 3 T TENSOR REMARK 3 T11: 0.4122 T22: 0.2183 REMARK 3 T33: 0.2705 T12: -0.0760 REMARK 3 T13: -0.0008 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 7.4164 L22: 3.7740 REMARK 3 L33: 3.5826 L12: 5.1397 REMARK 3 L13: 1.8090 L23: 0.4784 REMARK 3 S TENSOR REMARK 3 S11: -0.1852 S12: 0.0502 S13: 0.4160 REMARK 3 S21: -0.3961 S22: 0.0324 S23: 0.2728 REMARK 3 S31: -0.6867 S32: 0.3563 S33: 0.1059 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 16:36) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8492 7.0297 93.0004 REMARK 3 T TENSOR REMARK 3 T11: 0.2137 T22: 0.1849 REMARK 3 T33: 0.2082 T12: -0.0108 REMARK 3 T13: -0.0101 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 6.6687 L22: 6.4683 REMARK 3 L33: 4.8196 L12: 0.7360 REMARK 3 L13: -0.2806 L23: 0.2063 REMARK 3 S TENSOR REMARK 3 S11: -0.0743 S12: -0.4236 S13: 0.3514 REMARK 3 S21: 0.3455 S22: 0.0368 S23: 0.2373 REMARK 3 S31: -0.3012 S32: 0.1873 S33: 0.0547 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 37:54) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9832 -4.6509 91.2256 REMARK 3 T TENSOR REMARK 3 T11: 0.2268 T22: 0.3100 REMARK 3 T33: 0.3371 T12: 0.0671 REMARK 3 T13: -0.0299 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 2.1997 L22: 6.2100 REMARK 3 L33: 5.7446 L12: 1.5092 REMARK 3 L13: -0.3401 L23: -1.5700 REMARK 3 S TENSOR REMARK 3 S11: -0.1785 S12: -0.1651 S13: -0.1204 REMARK 3 S21: 0.1373 S22: 0.0961 S23: -0.6905 REMARK 3 S31: 0.4263 S32: 0.7527 S33: 0.0136 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 55:78) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2186 1.5967 82.5339 REMARK 3 T TENSOR REMARK 3 T11: 0.2262 T22: 0.4083 REMARK 3 T33: 0.3128 T12: 0.0240 REMARK 3 T13: 0.0500 T23: -0.0642 REMARK 3 L TENSOR REMARK 3 L11: 8.2021 L22: 5.0770 REMARK 3 L33: 8.4175 L12: 1.6146 REMARK 3 L13: 4.3304 L23: 0.8251 REMARK 3 S TENSOR REMARK 3 S11: -0.1978 S12: -0.0181 S13: -0.1011 REMARK 3 S21: -0.2086 S22: 0.1616 S23: -0.6085 REMARK 3 S31: 0.1149 S32: 0.8179 S33: 0.0029 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 79:91) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0212 -11.7322 67.9637 REMARK 3 T TENSOR REMARK 3 T11: 0.4955 T22: 0.4400 REMARK 3 T33: 0.4106 T12: 0.1448 REMARK 3 T13: -0.0691 T23: -0.0853 REMARK 3 L TENSOR REMARK 3 L11: 4.0374 L22: 7.2053 REMARK 3 L33: 5.3901 L12: -4.7637 REMARK 3 L13: -3.9562 L23: 3.3383 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: -0.4833 S13: -0.1288 REMARK 3 S21: 0.6802 S22: 0.4734 S23: -0.1904 REMARK 3 S31: 0.7726 S32: 0.8870 S33: -0.3663 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 92:103) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5162 -15.1133 53.8999 REMARK 3 T TENSOR REMARK 3 T11: 0.4098 T22: 0.3692 REMARK 3 T33: 0.3099 T12: 0.1392 REMARK 3 T13: 0.0069 T23: -0.0944 REMARK 3 L TENSOR REMARK 3 L11: 6.2671 L22: 3.0278 REMARK 3 L33: 3.7895 L12: -4.0432 REMARK 3 L13: 4.6387 L23: -3.3754 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0179 S13: -0.1747 REMARK 3 S21: 0.0086 S22: 0.2747 S23: -0.2935 REMARK 3 S31: 0.3114 S32: 0.6314 S33: -0.3378 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX-HR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26560 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.93000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD, MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVIOR SOLUTION: 77% AMMONIUM REMARK 280 SULFATE, 0.1 M TRIS, PH 7.5 PROTEIN SOLUTION: 18 MG/ML IN 75 % REMARK 280 AMMONIUM SULFATE DETERGENT SOLUTION: 2.5 MM CYMAL-5 IN DEIONIZED REMARK 280 WATER MIXED 2:2:1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.87000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.66300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.24100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.87000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.66300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.24100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.87000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.66300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.24100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.87000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 34.66300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.24100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -159.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 144.96400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 316 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 362 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 364 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 17 CAC HEC A 201 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -145.22 -131.87 REMARK 500 ASN A 70 75.97 -164.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 88.4 REMARK 620 3 HEC A 201 NB 89.1 90.8 REMARK 620 4 HEC A 201 NC 90.4 178.7 88.8 REMARK 620 5 HEC A 201 ND 88.5 88.7 177.6 91.6 REMARK 620 6 HOH A 347 O 177.8 90.0 92.4 91.2 90.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CM5 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 207 DBREF 5KKE A -5 103 UNP P00044 CYC1_YEAST 2 109 SEQADV 5KKE ALA A 72 UNP P00044 LYS 78 ENGINEERED MUTATION SEQADV 5KKE SER A 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQRES 1 A 108 THR GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO ALA LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA SER GLU HET HEC A 201 43 HET SO4 A 202 5 HET SO4 A 203 5 HET CM5 A 204 68 HET CL A 205 1 HET GOL A 206 6 HET GOL A 207 6 HETNAM HEC HEME C HETNAM SO4 SULFATE ION HETNAM CM5 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN CM5 5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D- HETSYN 2 CM5 GLUCOPYRANOSIDE; CYMAL-5 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEC C34 H34 FE N4 O4 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 CM5 C23 H42 O11 FORMUL 6 CL CL 1- FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *79(H2 O) HELIX 1 AA1 SER A 2 CYS A 14 1 13 HELIX 2 AA2 ASP A 50 LYS A 55 1 6 HELIX 3 AA3 ASP A 60 LEU A 68 1 9 HELIX 4 AA4 THR A 69 ILE A 75 5 7 HELIX 5 AA5 GLY A 77 PHE A 82 1 6 HELIX 6 AA6 LYS A 87 SER A 102 1 16 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.82 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.12 LINK FE HEC A 201 O HOH A 347 1555 1555 2.07 SITE 1 AC1 23 ARG A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 23 VAL A 28 ILE A 35 SER A 40 GLY A 41 SITE 3 AC1 23 TYR A 48 THR A 49 ALA A 51 TRP A 59 SITE 4 AC1 23 TYR A 67 ALA A 81 PHE A 82 GLY A 83 SITE 5 AC1 23 LEU A 94 CM5 A 204 HOH A 320 HOH A 330 SITE 6 AC1 23 HOH A 331 HOH A 333 HOH A 347 SITE 1 AC2 9 SER A 2 ALA A 3 LYS A 4 SER A 47 SITE 2 AC2 9 TYR A 48 ASN A 52 HOH A 308 HOH A 318 SITE 3 AC2 9 HOH A 352 SITE 1 AC3 8 PRO A 76 GLY A 77 THR A 78 LYS A 79 SITE 2 AC3 8 MET A 80 LYS A 86 HOH A 307 HOH A 317 SITE 1 AC4 11 TYR A 48 ASN A 52 LYS A 55 GLU A 66 SITE 2 AC4 11 TYR A 67 LYS A 73 TYR A 74 HEC A 201 SITE 3 AC4 11 HOH A 302 HOH A 306 HOH A 315 SITE 1 AC5 6 GLY A 23 GLY A 24 HIS A 26 GLY A 45 SITE 2 AC5 6 HOH A 323 HOH A 324 SITE 1 AC6 1 PHE A 82 CRYST1 49.740 69.326 72.482 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013797 0.00000