HEADER TRANSCRIPTION/DNA 22-JUN-16 5KKQ TITLE HOMO SAPIENS CCCTC-BINDING FACTOR (CTCF) ZNF3-7 AND DNA COMPLEX TITLE 2 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR CTCF; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: 11-ZINC FINGER PROTEIN,CCCTC-BINDING FACTOR,CTCFL PARALOG; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*TP*AP*GP*CP*GP*CP*CP*CP*CP*CP*TP*GP*CP*TP*GP*GP*C)-3'); COMPND 9 CHAIN: B, E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*GP*GP*CP*GP*CP*TP*A)-3'); COMPND 14 CHAIN: C, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTCF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL-CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-6P-1; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PXC1551; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS CTCF, ZINC FINGER, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,D.WANG,X.CHENG REVDAT 6 06-MAR-24 5KKQ 1 REMARK REVDAT 5 25-DEC-19 5KKQ 1 REMARK REVDAT 4 20-SEP-17 5KKQ 1 REMARK REVDAT 3 14-JUN-17 5KKQ 1 JRNL REVDAT 2 07-JUN-17 5KKQ 1 JRNL REVDAT 1 24-MAY-17 5KKQ 0 JRNL AUTH H.HASHIMOTO,D.WANG,J.R.HORTON,X.ZHANG,V.G.CORCES,X.CHENG JRNL TITL STRUCTURAL BASIS FOR THE VERSATILE AND METHYLATION-DEPENDENT JRNL TITL 2 BINDING OF CTCF TO DNA. JRNL REF MOL. CELL V. 66 711 2017 JRNL REFN ISSN 1097-4164 JRNL PMID 28529057 JRNL DOI 10.1016/J.MOLCEL.2017.05.004 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2257: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 3 NUMBER OF REFLECTIONS : 110863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.490 REMARK 3 FREE R VALUE TEST SET COUNT : 3864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9398 - 5.2862 0.96 4092 151 0.1345 0.1373 REMARK 3 2 5.2862 - 4.2000 0.97 4181 150 0.1174 0.1376 REMARK 3 3 4.2000 - 3.6703 0.96 4124 149 0.1350 0.1489 REMARK 3 4 3.6703 - 3.3352 0.97 4135 154 0.1446 0.1616 REMARK 3 5 3.3352 - 3.0965 0.95 4082 146 0.1833 0.2410 REMARK 3 6 3.0965 - 2.9141 0.97 4132 147 0.1941 0.3239 REMARK 3 7 2.9141 - 2.7683 0.97 4136 150 0.1978 0.2275 REMARK 3 8 2.7683 - 2.6478 0.97 4109 148 0.1830 0.2368 REMARK 3 9 2.6478 - 2.5460 0.97 4148 152 0.1784 0.2360 REMARK 3 10 2.5460 - 2.4582 0.96 4191 150 0.1837 0.2157 REMARK 3 11 2.4582 - 2.3813 0.97 4143 150 0.1831 0.1972 REMARK 3 12 2.3813 - 2.3133 0.96 4094 148 0.1769 0.1771 REMARK 3 13 2.3133 - 2.2524 0.95 4036 146 0.1734 0.2304 REMARK 3 14 2.2524 - 2.1975 0.96 4150 152 0.1844 0.2481 REMARK 3 15 2.1975 - 2.1475 0.95 4001 144 0.1846 0.1933 REMARK 3 16 2.1475 - 2.1019 0.96 4149 148 0.2007 0.2561 REMARK 3 17 2.1019 - 2.0598 0.95 3977 146 0.2213 0.2881 REMARK 3 18 2.0598 - 2.0210 0.95 4127 148 0.2314 0.2544 REMARK 3 19 2.0210 - 1.9849 0.94 4022 146 0.2407 0.2632 REMARK 3 20 1.9849 - 1.9512 0.94 3943 142 0.2443 0.2500 REMARK 3 21 1.9512 - 1.9198 0.93 4045 146 0.2443 0.3006 REMARK 3 22 1.9198 - 1.8902 0.91 3967 141 0.2616 0.2625 REMARK 3 23 1.8902 - 1.8624 0.89 3740 135 0.2692 0.2629 REMARK 3 24 1.8624 - 1.8362 0.86 3818 141 0.2785 0.2605 REMARK 3 25 1.8362 - 1.8114 0.79 3314 114 0.2878 0.3430 REMARK 3 26 1.8114 - 1.7879 0.66 2791 97 0.2948 0.2926 REMARK 3 27 1.7879 - 1.7655 0.46 1972 72 0.3088 0.3104 REMARK 3 28 1.7655 - 1.7443 0.32 1380 51 0.2947 0.2852 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 4139 REMARK 3 ANGLE : 1.489 5844 REMARK 3 CHIRALITY : 0.080 636 REMARK 3 PLANARITY : 0.011 494 REMARK 3 DIHEDRAL : 21.642 2255 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7358 -18.2625 -23.3722 REMARK 3 T TENSOR REMARK 3 T11: 0.4433 T22: 0.4329 REMARK 3 T33: 0.2961 T12: -0.1068 REMARK 3 T13: 0.0713 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 2.8081 L22: 4.6291 REMARK 3 L33: 5.3858 L12: -1.6544 REMARK 3 L13: -1.3487 L23: 4.2398 REMARK 3 S TENSOR REMARK 3 S11: -0.0507 S12: 0.2533 S13: -0.1503 REMARK 3 S21: -0.5515 S22: 0.3739 S23: -0.5040 REMARK 3 S31: -0.4614 S32: 0.9493 S33: -0.3797 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 375 THROUGH 418 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9550 -25.5524 -13.2481 REMARK 3 T TENSOR REMARK 3 T11: 0.3059 T22: 0.2114 REMARK 3 T33: 0.2518 T12: -0.0016 REMARK 3 T13: -0.0684 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 2.3167 L22: 7.9062 REMARK 3 L33: 2.8013 L12: -2.7179 REMARK 3 L13: 1.5034 L23: -1.7525 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: -0.0444 S13: -0.0335 REMARK 3 S21: -0.8235 S22: 0.0040 S23: 0.7131 REMARK 3 S31: -0.0022 S32: -0.1242 S33: -0.0689 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 419 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7477 -40.0621 -1.6047 REMARK 3 T TENSOR REMARK 3 T11: 0.2214 T22: 0.2219 REMARK 3 T33: 0.2574 T12: 0.0280 REMARK 3 T13: 0.0084 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.7061 L22: 2.4172 REMARK 3 L33: 7.2167 L12: 0.5467 REMARK 3 L13: 2.2001 L23: 2.2784 REMARK 3 S TENSOR REMARK 3 S11: 0.2190 S12: 0.0300 S13: -0.0885 REMARK 3 S21: -0.0410 S22: 0.1590 S23: -0.2020 REMARK 3 S31: 0.5179 S32: 0.4988 S33: -0.3438 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 440 THROUGH 463 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2798 -31.6500 13.1996 REMARK 3 T TENSOR REMARK 3 T11: 0.2068 T22: 0.3106 REMARK 3 T33: 0.2626 T12: -0.0012 REMARK 3 T13: 0.0443 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 7.7143 L22: 3.5531 REMARK 3 L33: 7.0453 L12: -0.0729 REMARK 3 L13: 0.0092 L23: 2.6087 REMARK 3 S TENSOR REMARK 3 S11: 0.0661 S12: -0.5192 S13: 0.7263 REMARK 3 S21: 0.4977 S22: -0.0237 S23: 0.0435 REMARK 3 S31: -0.0937 S32: -0.0564 S33: -0.0347 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7668 -13.8419 -28.1851 REMARK 3 T TENSOR REMARK 3 T11: 0.7106 T22: 0.5282 REMARK 3 T33: 0.4851 T12: 0.0078 REMARK 3 T13: 0.1220 T23: 0.1464 REMARK 3 L TENSOR REMARK 3 L11: 7.8610 L22: 6.9767 REMARK 3 L33: 3.6279 L12: -4.1896 REMARK 3 L13: 0.1314 L23: 3.6847 REMARK 3 S TENSOR REMARK 3 S11: 0.0959 S12: -0.6219 S13: -0.4658 REMARK 3 S21: 0.2426 S22: -0.0841 S23: 0.5942 REMARK 3 S31: -1.3210 S32: -0.0698 S33: -0.0468 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6364 -27.4657 -17.2677 REMARK 3 T TENSOR REMARK 3 T11: 0.3764 T22: 0.3844 REMARK 3 T33: 0.3440 T12: -0.0539 REMARK 3 T13: 0.0321 T23: 0.1542 REMARK 3 L TENSOR REMARK 3 L11: 2.6486 L22: 7.7036 REMARK 3 L33: 6.9160 L12: 0.0437 REMARK 3 L13: 0.4641 L23: 1.4709 REMARK 3 S TENSOR REMARK 3 S11: 0.1734 S12: 0.2952 S13: 0.1094 REMARK 3 S21: -0.4442 S22: 0.5408 S23: 0.2770 REMARK 3 S31: 0.7351 S32: -0.1653 S33: -0.7307 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0982 -28.7428 2.4513 REMARK 3 T TENSOR REMARK 3 T11: 0.1813 T22: 0.2724 REMARK 3 T33: 0.3304 T12: 0.0265 REMARK 3 T13: -0.0039 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 6.7433 L22: 5.5362 REMARK 3 L33: 6.8344 L12: 5.0466 REMARK 3 L13: -5.5201 L23: -2.3816 REMARK 3 S TENSOR REMARK 3 S11: 0.2465 S12: -0.3863 S13: 0.9730 REMARK 3 S21: -0.0105 S22: 0.1528 S23: 0.8018 REMARK 3 S31: -0.2110 S32: 0.2357 S33: -0.4010 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7234 -28.2710 -3.4408 REMARK 3 T TENSOR REMARK 3 T11: 0.1611 T22: 0.2447 REMARK 3 T33: 0.1772 T12: 0.0264 REMARK 3 T13: 0.0276 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.5361 L22: 5.3190 REMARK 3 L33: 3.7472 L12: 1.5285 REMARK 3 L13: -0.3779 L23: -3.2301 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.1883 S13: -0.0487 REMARK 3 S21: -0.2130 S22: 0.0169 S23: 0.1229 REMARK 3 S31: 0.0799 S32: 0.1590 S33: -0.0005 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3557 -23.2358 -24.7968 REMARK 3 T TENSOR REMARK 3 T11: 0.4264 T22: 0.3994 REMARK 3 T33: 0.2916 T12: -0.0417 REMARK 3 T13: 0.0409 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 5.9877 L22: 8.6332 REMARK 3 L33: 4.2439 L12: -2.2345 REMARK 3 L13: 0.3122 L23: 2.0597 REMARK 3 S TENSOR REMARK 3 S11: 0.4087 S12: 0.3915 S13: -0.2843 REMARK 3 S21: -0.4919 S22: 0.1832 S23: 0.3954 REMARK 3 S31: -0.0069 S32: 0.5574 S33: -0.5679 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6304 -16.0897 -37.2381 REMARK 3 T TENSOR REMARK 3 T11: 0.6771 T22: 0.7961 REMARK 3 T33: 0.5424 T12: -0.0663 REMARK 3 T13: 0.1005 T23: 0.0882 REMARK 3 L TENSOR REMARK 3 L11: 5.1292 L22: 2.0008 REMARK 3 L33: 8.3121 L12: 2.9136 REMARK 3 L13: 4.7805 L23: -2.9677 REMARK 3 S TENSOR REMARK 3 S11: 0.9514 S12: 0.7595 S13: 1.6274 REMARK 3 S21: -1.0540 S22: -0.2308 S23: 1.6684 REMARK 3 S31: 0.1625 S32: 0.9105 S33: -0.7930 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 321 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5305 -16.6062 36.5516 REMARK 3 T TENSOR REMARK 3 T11: 0.4181 T22: 0.5114 REMARK 3 T33: 0.3388 T12: -0.0588 REMARK 3 T13: 0.0845 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 3.4787 L22: 3.4276 REMARK 3 L33: 4.8811 L12: -0.0734 REMARK 3 L13: 0.7343 L23: 3.2104 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: -0.1943 S13: -0.2587 REMARK 3 S21: 0.3685 S22: -0.3069 S23: 0.4913 REMARK 3 S31: 0.6480 S32: -0.3541 S33: 0.3194 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 375 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1603 -6.6880 36.4043 REMARK 3 T TENSOR REMARK 3 T11: 0.2369 T22: 0.5479 REMARK 3 T33: 0.2441 T12: -0.0097 REMARK 3 T13: 0.0045 T23: 0.0765 REMARK 3 L TENSOR REMARK 3 L11: 5.4617 L22: 6.7497 REMARK 3 L33: 4.9430 L12: -2.7180 REMARK 3 L13: -2.0733 L23: 3.2539 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: -0.6314 S13: 0.1130 REMARK 3 S21: 0.4870 S22: 0.0260 S23: 0.0731 REMARK 3 S31: 0.0570 S32: -0.0814 S33: -0.0451 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 403 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1941 -12.5063 15.3683 REMARK 3 T TENSOR REMARK 3 T11: 0.3505 T22: 0.1929 REMARK 3 T33: 0.2064 T12: -0.0169 REMARK 3 T13: 0.0322 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 8.6010 L22: 6.9035 REMARK 3 L33: 2.5124 L12: 0.6794 REMARK 3 L13: 1.4945 L23: 3.2331 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: 0.0955 S13: -0.3716 REMARK 3 S21: -0.4911 S22: 0.0890 S23: 0.0531 REMARK 3 S31: 0.4920 S32: 0.0918 S33: -0.0619 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 431 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3918 6.7350 9.4789 REMARK 3 T TENSOR REMARK 3 T11: 0.1731 T22: 0.2644 REMARK 3 T33: 0.2620 T12: -0.0220 REMARK 3 T13: 0.0442 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 5.3254 L22: 8.0489 REMARK 3 L33: 6.5983 L12: -1.0559 REMARK 3 L13: 1.5925 L23: 2.3871 REMARK 3 S TENSOR REMARK 3 S11: 0.3132 S12: 0.0880 S13: -0.0604 REMARK 3 S21: -0.0594 S22: -0.3481 S23: 0.1971 REMARK 3 S31: 0.2436 S32: -0.2262 S33: 0.0279 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 460 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7578 20.8153 14.8208 REMARK 3 T TENSOR REMARK 3 T11: 0.4662 T22: 0.3636 REMARK 3 T33: 0.6192 T12: 0.0189 REMARK 3 T13: 0.1168 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 6.0103 L22: 5.0320 REMARK 3 L33: 8.3596 L12: 5.3687 REMARK 3 L13: 7.0423 L23: 6.4525 REMARK 3 S TENSOR REMARK 3 S11: 0.1851 S12: -0.9370 S13: 1.4612 REMARK 3 S21: 1.1620 S22: -0.2397 S23: 1.9930 REMARK 3 S31: -0.0779 S32: -0.4630 S33: 0.0380 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1245 -18.7108 44.6373 REMARK 3 T TENSOR REMARK 3 T11: 0.6117 T22: 0.6890 REMARK 3 T33: 0.3955 T12: -0.1134 REMARK 3 T13: 0.0479 T23: 0.1107 REMARK 3 L TENSOR REMARK 3 L11: 1.5828 L22: 6.9060 REMARK 3 L33: 6.5588 L12: -1.7422 REMARK 3 L13: 2.5233 L23: 0.7868 REMARK 3 S TENSOR REMARK 3 S11: -0.6406 S12: -0.7239 S13: 0.7578 REMARK 3 S21: 0.3116 S22: 0.1570 S23: -0.2881 REMARK 3 S31: -0.4893 S32: 0.8845 S33: 0.4188 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 6 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6964 -2.9976 22.7319 REMARK 3 T TENSOR REMARK 3 T11: 0.2164 T22: 0.3357 REMARK 3 T33: 0.1455 T12: 0.0105 REMARK 3 T13: 0.0201 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 4.5254 L22: 4.7922 REMARK 3 L33: 2.9634 L12: 3.5903 REMARK 3 L13: -3.3382 L23: -3.7551 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.3250 S13: 0.3949 REMARK 3 S21: -0.1370 S22: 0.0408 S23: 0.2786 REMARK 3 S31: 0.1715 S32: 0.2215 S33: -0.0929 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6082 -0.2158 13.5746 REMARK 3 T TENSOR REMARK 3 T11: 0.1917 T22: 0.2563 REMARK 3 T33: 0.2314 T12: 0.0014 REMARK 3 T13: 0.0436 T23: 0.0546 REMARK 3 L TENSOR REMARK 3 L11: 2.6766 L22: 4.7690 REMARK 3 L33: 5.9948 L12: 0.2392 REMARK 3 L13: 1.7936 L23: -3.9330 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: -0.0983 S13: 0.0473 REMARK 3 S21: -0.1525 S22: -0.0646 S23: -0.0503 REMARK 3 S31: 0.1616 S32: 0.0057 S33: -0.0964 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4313 -12.2376 31.9386 REMARK 3 T TENSOR REMARK 3 T11: 0.2969 T22: 0.3787 REMARK 3 T33: 0.1885 T12: 0.0244 REMARK 3 T13: 0.0299 T23: 0.0441 REMARK 3 L TENSOR REMARK 3 L11: 4.6280 L22: 4.4023 REMARK 3 L33: 2.9965 L12: 2.4174 REMARK 3 L13: -1.5982 L23: 0.3454 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.0825 S13: 0.0237 REMARK 3 S21: 0.3738 S22: -0.0461 S23: 0.2688 REMARK 3 S31: 0.4329 S32: -0.0590 S33: 0.0881 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 16 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8111 -27.0098 47.3473 REMARK 3 T TENSOR REMARK 3 T11: 0.8180 T22: 0.7444 REMARK 3 T33: 0.5287 T12: -0.1573 REMARK 3 T13: 0.1916 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 5.8550 L22: 8.5412 REMARK 3 L33: 6.7424 L12: -3.6074 REMARK 3 L13: 5.1365 L23: -5.3119 REMARK 3 S TENSOR REMARK 3 S11: 1.5216 S12: -1.5607 S13: 1.3851 REMARK 3 S21: -0.0455 S22: -0.3121 S23: -0.9144 REMARK 3 S31: 1.8426 S32: -0.0256 S33: -0.9517 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.27046 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110968 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 28.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 3350, 0.2 M NACL, 0.1 M REMARK 280 BIS-TRIS, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 316 REMARK 465 GLU A 464 REMARK 465 GLN A 465 REMARK 465 GLY D 316 REMARK 465 PRO D 317 REMARK 465 LEU D 318 REMARK 465 GLY D 319 REMARK 465 SER D 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 463 CG1 CG2 CD1 REMARK 470 GLN D 465 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR D 343 OE2 GLU D 362 1.56 REMARK 500 OP2 DG B 15 O HOH B 101 1.75 REMARK 500 OP2 DG B 12 O HOH B 102 1.88 REMARK 500 OP1 DC E 10 O HOH E 101 2.04 REMARK 500 O HOH D 660 O HOH D 679 2.05 REMARK 500 OP2 DA C 4 O HOH C 101 2.05 REMARK 500 O HOH E 139 O HOH E 141 2.10 REMARK 500 O HOH A 603 O HOH C 138 2.11 REMARK 500 O HOH D 674 O HOH D 678 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B 1 O3' DT B 1 C3' -0.054 REMARK 500 DG B 5 O3' DG B 5 C3' 0.094 REMARK 500 DC B 7 O3' DC B 7 C3' -0.050 REMARK 500 DG B 12 O3' DG B 12 C3' -0.063 REMARK 500 DC B 13 O3' DC B 13 C3' -0.055 REMARK 500 DG B 16 O3' DG B 16 C3' -0.038 REMARK 500 DC B 17 O3' DC B 17 C3' -0.044 REMARK 500 DA C 7 O3' DA C 7 C3' -0.044 REMARK 500 DC E 9 O3' DC E 9 C3' -0.047 REMARK 500 DG E 12 O3' DG E 12 C3' -0.044 REMARK 500 DC E 13 O3' DC E 13 C3' -0.062 REMARK 500 DG E 15 O3' DG E 15 C3' -0.036 REMARK 500 DC F 6 O3' DC F 6 C3' -0.073 REMARK 500 DA F 7 P DA F 7 OP1 -0.104 REMARK 500 DG F 8 O3' DG F 8 C3' -0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 327 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 399 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 399 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DC B 4 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG B 5 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG B 5 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC B 6 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT B 11 OP1 - P - OP2 ANGL. DEV. = 9.4 DEGREES REMARK 500 DT B 11 O5' - P - OP2 ANGL. DEV. = -6.0 DEGREES REMARK 500 DG B 12 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC B 13 O5' - P - OP1 ANGL. DEV. = 7.7 DEGREES REMARK 500 DC B 13 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC C 6 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG C 10 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG D 399 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG E 5 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC E 7 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA F 4 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG F 5 O3' - P - OP2 ANGL. DEV. = 7.4 DEGREES REMARK 500 DA F 7 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG F 9 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG F 10 O5' - P - OP2 ANGL. DEV. = -9.9 DEGREES REMARK 500 DG F 10 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 345 -50.94 -122.01 REMARK 500 SER A 461 56.10 39.84 REMARK 500 HIS D 345 -53.23 -120.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 324 SG REMARK 620 2 CYS A 327 SG 128.2 REMARK 620 3 HIS A 340 NE2 107.2 102.2 REMARK 620 4 HIS A 345 NE2 97.6 117.3 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 353 SG REMARK 620 2 CYS A 356 SG 123.4 REMARK 620 3 HIS A 369 NE2 107.1 101.1 REMARK 620 4 HIS A 373 NE2 103.2 118.6 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 381 SG REMARK 620 2 CYS A 384 SG 123.8 REMARK 620 3 HIS A 397 NE2 111.2 98.4 REMARK 620 4 HIS A 401 NE2 108.3 114.6 96.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 409 SG REMARK 620 2 CYS A 412 SG 118.4 REMARK 620 3 HIS A 425 NE2 110.2 105.3 REMARK 620 4 HIS A 430 NE2 103.6 116.1 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 439 SG REMARK 620 2 CYS A 442 SG 122.2 REMARK 620 3 HIS A 455 NE2 106.1 101.7 REMARK 620 4 HIS A 460 NE2 102.5 120.1 101.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 324 SG REMARK 620 2 CYS D 327 SG 120.7 REMARK 620 3 HIS D 340 NE2 108.1 99.7 REMARK 620 4 HIS D 345 NE2 96.5 124.9 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 353 SG REMARK 620 2 CYS D 356 SG 125.7 REMARK 620 3 HIS D 369 NE2 108.4 97.7 REMARK 620 4 HIS D 373 NE2 106.1 114.5 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 381 SG REMARK 620 2 CYS D 384 SG 122.6 REMARK 620 3 HIS D 397 NE2 108.1 99.9 REMARK 620 4 HIS D 401 NE2 110.2 112.5 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 409 SG REMARK 620 2 CYS D 412 SG 116.4 REMARK 620 3 HIS D 425 NE2 109.3 106.0 REMARK 620 4 HIS D 430 NE2 100.6 120.4 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 439 SG REMARK 620 2 CYS D 442 SG 123.2 REMARK 620 3 HIS D 455 NE2 103.4 107.3 REMARK 620 4 HIS D 460 NE2 98.5 122.6 97.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 505 DBREF 5KKQ A 321 465 UNP P49711 CTCF_HUMAN 321 465 DBREF 5KKQ B 1 17 PDB 5KKQ 5KKQ 1 17 DBREF 5KKQ C 1 17 PDB 5KKQ 5KKQ 1 17 DBREF 5KKQ D 321 465 UNP P49711 CTCF_HUMAN 321 465 DBREF 5KKQ E 1 17 PDB 5KKQ 5KKQ 1 17 DBREF 5KKQ F 1 17 PDB 5KKQ 5KKQ 1 17 SEQADV 5KKQ GLY A 316 UNP P49711 EXPRESSION TAG SEQADV 5KKQ PRO A 317 UNP P49711 EXPRESSION TAG SEQADV 5KKQ LEU A 318 UNP P49711 EXPRESSION TAG SEQADV 5KKQ GLY A 319 UNP P49711 EXPRESSION TAG SEQADV 5KKQ SER A 320 UNP P49711 EXPRESSION TAG SEQADV 5KKQ GLY D 316 UNP P49711 EXPRESSION TAG SEQADV 5KKQ PRO D 317 UNP P49711 EXPRESSION TAG SEQADV 5KKQ LEU D 318 UNP P49711 EXPRESSION TAG SEQADV 5KKQ GLY D 319 UNP P49711 EXPRESSION TAG SEQADV 5KKQ SER D 320 UNP P49711 EXPRESSION TAG SEQRES 1 A 150 GLY PRO LEU GLY SER PRO HIS LYS CYS PRO ASP CYS ASP SEQRES 2 A 150 MET ALA PHE VAL THR SER GLY GLU LEU VAL ARG HIS ARG SEQRES 3 A 150 ARG TYR LYS HIS THR HIS GLU LYS PRO PHE LYS CYS SER SEQRES 4 A 150 MET CYS ASP TYR ALA SER VAL GLU VAL SER LYS LEU LYS SEQRES 5 A 150 ARG HIS ILE ARG SER HIS THR GLY GLU ARG PRO PHE GLN SEQRES 6 A 150 CYS SER LEU CYS SER TYR ALA SER ARG ASP THR TYR LYS SEQRES 7 A 150 LEU LYS ARG HIS MET ARG THR HIS SER GLY GLU LYS PRO SEQRES 8 A 150 TYR GLU CYS TYR ILE CYS HIS ALA ARG PHE THR GLN SER SEQRES 9 A 150 GLY THR MET LYS MET HIS ILE LEU GLN LYS HIS THR GLU SEQRES 10 A 150 ASN VAL ALA LYS PHE HIS CYS PRO HIS CYS ASP THR VAL SEQRES 11 A 150 ILE ALA ARG LYS SER ASP LEU GLY VAL HIS LEU ARG LYS SEQRES 12 A 150 GLN HIS SER TYR ILE GLU GLN SEQRES 1 B 17 DT DA DG DC DG DC DC DC DC DC DT DG DC SEQRES 2 B 17 DT DG DG DC SEQRES 1 C 17 DG DC DC DA DG DC DA DG DG DG DG DG DC SEQRES 2 C 17 DG DC DT DA SEQRES 1 D 150 GLY PRO LEU GLY SER PRO HIS LYS CYS PRO ASP CYS ASP SEQRES 2 D 150 MET ALA PHE VAL THR SER GLY GLU LEU VAL ARG HIS ARG SEQRES 3 D 150 ARG TYR LYS HIS THR HIS GLU LYS PRO PHE LYS CYS SER SEQRES 4 D 150 MET CYS ASP TYR ALA SER VAL GLU VAL SER LYS LEU LYS SEQRES 5 D 150 ARG HIS ILE ARG SER HIS THR GLY GLU ARG PRO PHE GLN SEQRES 6 D 150 CYS SER LEU CYS SER TYR ALA SER ARG ASP THR TYR LYS SEQRES 7 D 150 LEU LYS ARG HIS MET ARG THR HIS SER GLY GLU LYS PRO SEQRES 8 D 150 TYR GLU CYS TYR ILE CYS HIS ALA ARG PHE THR GLN SER SEQRES 9 D 150 GLY THR MET LYS MET HIS ILE LEU GLN LYS HIS THR GLU SEQRES 10 D 150 ASN VAL ALA LYS PHE HIS CYS PRO HIS CYS ASP THR VAL SEQRES 11 D 150 ILE ALA ARG LYS SER ASP LEU GLY VAL HIS LEU ARG LYS SEQRES 12 D 150 GLN HIS SER TYR ILE GLU GLN SEQRES 1 E 17 DT DA DG DC DG DC DC DC DC DC DT DG DC SEQRES 2 E 17 DT DG DG DC SEQRES 1 F 17 DG DC DC DA DG DC DA DG DG DG DG DG DC SEQRES 2 F 17 DG DC DT DA HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET ZN D 501 1 HET ZN D 502 1 HET ZN D 503 1 HET ZN D 504 1 HET ZN D 505 1 HETNAM ZN ZINC ION FORMUL 7 ZN 10(ZN 2+) FORMUL 17 HOH *327(H2 O) HELIX 1 AA1 THR A 333 HIS A 345 1 13 HELIX 2 AA2 GLU A 362 GLY A 375 1 14 HELIX 3 AA3 ASP A 390 GLY A 403 1 14 HELIX 4 AA4 GLN A 418 HIS A 430 1 13 HELIX 5 AA5 ARG A 448 HIS A 460 1 13 HELIX 6 AA6 THR D 333 HIS D 345 1 13 HELIX 7 AA7 GLU D 362 GLY D 375 1 14 HELIX 8 AA8 ASP D 390 GLY D 403 1 14 HELIX 9 AA9 GLN D 418 THR D 431 1 14 HELIX 10 AB1 ARG D 448 HIS D 460 1 13 SHEET 1 AA1 2 HIS A 322 LYS A 323 0 SHEET 2 AA1 2 ALA A 330 PHE A 331 -1 O PHE A 331 N HIS A 322 SHEET 1 AA2 2 PHE A 351 LYS A 352 0 SHEET 2 AA2 2 ALA A 359 SER A 360 -1 O SER A 360 N PHE A 351 SHEET 1 AA3 2 PHE A 379 GLN A 380 0 SHEET 2 AA3 2 ALA A 387 SER A 388 -1 O SER A 388 N PHE A 379 SHEET 1 AA4 2 TYR A 407 GLU A 408 0 SHEET 2 AA4 2 ARG A 415 PHE A 416 -1 O PHE A 416 N TYR A 407 SHEET 1 AA5 2 PHE A 437 CYS A 439 0 SHEET 2 AA5 2 THR A 444 ILE A 446 -1 O THR A 444 N CYS A 439 SHEET 1 AA6 2 HIS D 322 LYS D 323 0 SHEET 2 AA6 2 ALA D 330 PHE D 331 -1 O PHE D 331 N HIS D 322 SHEET 1 AA7 2 PHE D 351 LYS D 352 0 SHEET 2 AA7 2 ALA D 359 SER D 360 -1 O SER D 360 N PHE D 351 SHEET 1 AA8 2 PHE D 379 GLN D 380 0 SHEET 2 AA8 2 ALA D 387 SER D 388 -1 O SER D 388 N PHE D 379 SHEET 1 AA9 2 TYR D 407 GLU D 408 0 SHEET 2 AA9 2 ARG D 415 PHE D 416 -1 O PHE D 416 N TYR D 407 SHEET 1 AB1 2 PHE D 437 HIS D 438 0 SHEET 2 AB1 2 VAL D 445 ILE D 446 -1 O ILE D 446 N PHE D 437 LINK SG CYS A 324 ZN ZN A 501 1555 1555 2.24 LINK SG CYS A 327 ZN ZN A 501 1555 1555 2.41 LINK NE2 HIS A 340 ZN ZN A 501 1555 1555 2.11 LINK NE2 HIS A 345 ZN ZN A 501 1555 1555 2.04 LINK SG CYS A 353 ZN ZN A 502 1555 1555 2.30 LINK SG CYS A 356 ZN ZN A 502 1555 1555 2.16 LINK NE2 HIS A 369 ZN ZN A 502 1555 1555 2.08 LINK NE2 HIS A 373 ZN ZN A 502 1555 1555 2.00 LINK SG CYS A 381 ZN ZN A 503 1555 1555 2.31 LINK SG CYS A 384 ZN ZN A 503 1555 1555 2.18 LINK NE2 HIS A 397 ZN ZN A 503 1555 1555 2.09 LINK NE2 HIS A 401 ZN ZN A 503 1555 1555 2.09 LINK SG CYS A 409 ZN ZN A 504 1555 1555 2.20 LINK SG CYS A 412 ZN ZN A 504 1555 1555 2.25 LINK NE2 HIS A 425 ZN ZN A 504 1555 1555 2.07 LINK NE2 HIS A 430 ZN ZN A 504 1555 1555 2.11 LINK SG CYS A 439 ZN ZN A 505 1555 1555 2.28 LINK SG CYS A 442 ZN ZN A 505 1555 1555 2.15 LINK NE2 HIS A 455 ZN ZN A 505 1555 1555 2.02 LINK NE2 HIS A 460 ZN ZN A 505 1555 1555 2.02 LINK SG CYS D 324 ZN ZN D 501 1555 1555 2.16 LINK SG CYS D 327 ZN ZN D 501 1555 1555 2.34 LINK NE2 HIS D 340 ZN ZN D 501 1555 1555 2.13 LINK NE2 HIS D 345 ZN ZN D 501 1555 1555 1.95 LINK SG CYS D 353 ZN ZN D 502 1555 1555 2.25 LINK SG CYS D 356 ZN ZN D 502 1555 1555 2.31 LINK NE2 HIS D 369 ZN ZN D 502 1555 1555 2.06 LINK NE2 HIS D 373 ZN ZN D 502 1555 1555 2.03 LINK SG CYS D 381 ZN ZN D 503 1555 1555 2.23 LINK SG CYS D 384 ZN ZN D 503 1555 1555 2.19 LINK NE2 HIS D 397 ZN ZN D 503 1555 1555 2.08 LINK NE2 HIS D 401 ZN ZN D 503 1555 1555 2.07 LINK SG CYS D 409 ZN ZN D 504 1555 1555 2.34 LINK SG CYS D 412 ZN ZN D 504 1555 1555 2.25 LINK NE2 HIS D 425 ZN ZN D 504 1555 1555 2.10 LINK NE2 HIS D 430 ZN ZN D 504 1555 1555 2.08 LINK SG CYS D 439 ZN ZN D 505 1555 1555 2.28 LINK SG CYS D 442 ZN ZN D 505 1555 1555 2.28 LINK NE2 HIS D 455 ZN ZN D 505 1555 1555 2.11 LINK NE2 HIS D 460 ZN ZN D 505 1555 1555 2.05 SITE 1 AC1 4 CYS A 324 CYS A 327 HIS A 340 HIS A 345 SITE 1 AC2 4 CYS A 353 CYS A 356 HIS A 369 HIS A 373 SITE 1 AC3 4 CYS A 381 CYS A 384 HIS A 397 HIS A 401 SITE 1 AC4 4 CYS A 409 CYS A 412 HIS A 425 HIS A 430 SITE 1 AC5 4 CYS A 439 CYS A 442 HIS A 455 HIS A 460 SITE 1 AC6 4 CYS D 324 CYS D 327 HIS D 340 HIS D 345 SITE 1 AC7 4 CYS D 353 CYS D 356 HIS D 369 HIS D 373 SITE 1 AC8 4 CYS D 381 CYS D 384 HIS D 397 HIS D 401 SITE 1 AC9 4 CYS D 409 CYS D 412 HIS D 425 HIS D 430 SITE 1 AD1 4 CYS D 439 CYS D 442 HIS D 455 HIS D 460 CRYST1 40.994 44.911 86.797 98.33 92.40 94.80 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024394 0.002048 0.001344 0.00000 SCALE2 0.000000 0.022345 0.003369 0.00000 SCALE3 0.000000 0.000000 0.011662 0.00000