HEADER TRANSFERRIN-BINDING PROTEIN 23-JUN-16 5KKX TITLE CRYSTAL STRUCTURE OF A TBPB C-LOBE MUTANT FROM NEISSERIA MENINGITIDIS TITLE 2 M982 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TBPB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MATURE TBPB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 STRAIN: M982; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS LIPOPROTEIN, TRANSFERRIN RECEPTOR, IRON ACQUISITION, VACCINE KEYWDS 2 CANDIDATE, TRANSFERRIN-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CALMETTES,T.F.MORAES REVDAT 3 27-SEP-23 5KKX 1 REMARK REVDAT 2 22-NOV-17 5KKX 1 REMARK REVDAT 1 19-JUL-17 5KKX 0 JRNL AUTH J.E.FEGAN,C.CALMETTES,R.-H.YU,T.F.M.MORAES,A.B.SCHRYVERS JRNL TITL ENGINEERED HYBRID TRANSFERRIN BINDING PROTEIN ANTIGENS FOR JRNL TITL 2 PROTECTION AGAINST NEISSERIA MENINGITIDIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 34081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.370 REMARK 3 FREE R VALUE TEST SET COUNT : 1488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2389 - 4.6665 0.98 3128 142 0.1739 0.2035 REMARK 3 2 4.6665 - 3.7055 0.99 2997 136 0.1399 0.1677 REMARK 3 3 3.7055 - 3.2375 0.99 2971 136 0.1604 0.2111 REMARK 3 4 3.2375 - 2.9417 1.00 2964 136 0.1663 0.2176 REMARK 3 5 2.9417 - 2.7310 1.00 2950 134 0.1832 0.2499 REMARK 3 6 2.7310 - 2.5700 1.00 2929 134 0.1887 0.3052 REMARK 3 7 2.5700 - 2.4414 1.00 2956 135 0.1925 0.2281 REMARK 3 8 2.4414 - 2.3351 1.00 2925 134 0.1805 0.2512 REMARK 3 9 2.3351 - 2.2452 1.00 2919 134 0.1895 0.2387 REMARK 3 10 2.2452 - 2.1678 1.00 2930 133 0.1872 0.2460 REMARK 3 11 2.1678 - 2.1000 1.00 2924 134 0.1844 0.2154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 48.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.07860 REMARK 3 B22 (A**2) : 2.07860 REMARK 3 B33 (A**2) : -4.15720 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3724 REMARK 3 ANGLE : 1.059 5013 REMARK 3 CHIRALITY : 0.078 537 REMARK 3 PLANARITY : 0.004 656 REMARK 3 DIHEDRAL : 13.340 1375 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 380:466) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8004 8.9200 -20.4191 REMARK 3 T TENSOR REMARK 3 T11: 0.4746 T22: 0.1820 REMARK 3 T33: 0.5416 T12: 0.0649 REMARK 3 T13: 0.0946 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 2.9691 L22: 3.0553 REMARK 3 L33: 3.4103 L12: -0.4888 REMARK 3 L13: -0.5370 L23: -0.1019 REMARK 3 S TENSOR REMARK 3 S11: -0.5702 S12: 0.1658 S13: -1.3592 REMARK 3 S21: 0.0506 S22: 0.1745 S23: -0.1828 REMARK 3 S31: 1.1652 S32: 0.1375 S33: -0.2238 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 467:521) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3482 26.3999 -15.8810 REMARK 3 T TENSOR REMARK 3 T11: 0.1084 T22: 0.0967 REMARK 3 T33: 0.0812 T12: 0.0032 REMARK 3 T13: -0.0007 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 2.4240 L22: 3.1959 REMARK 3 L33: 2.4414 L12: -1.0659 REMARK 3 L13: -0.4079 L23: 0.4675 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: 0.0948 S13: -0.2429 REMARK 3 S21: 0.1719 S22: -0.0282 S23: 0.1724 REMARK 3 S31: 0.2105 S32: 0.0186 S33: -0.0337 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 522:555) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2340 31.7416 -20.0947 REMARK 3 T TENSOR REMARK 3 T11: 0.1618 T22: 0.1096 REMARK 3 T33: 0.1124 T12: -0.0002 REMARK 3 T13: 0.0068 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 6.6952 L22: 3.6937 REMARK 3 L33: 4.2497 L12: 1.0083 REMARK 3 L13: 0.0922 L23: 0.7226 REMARK 3 S TENSOR REMARK 3 S11: 0.0848 S12: -0.1785 S13: 0.2802 REMARK 3 S21: 0.0489 S22: -0.0989 S23: -0.0943 REMARK 3 S31: -0.1468 S32: 0.1622 S33: 0.1361 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 556:612) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5467 27.3780 -21.0079 REMARK 3 T TENSOR REMARK 3 T11: 0.1758 T22: 0.1240 REMARK 3 T33: 0.1241 T12: -0.0015 REMARK 3 T13: -0.0348 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 4.6704 L22: 4.2392 REMARK 3 L33: 2.9474 L12: 0.5194 REMARK 3 L13: 0.5382 L23: 0.3254 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: -0.1204 S13: 0.0523 REMARK 3 S21: 0.2770 S22: -0.0039 S23: -0.1368 REMARK 3 S31: -0.1911 S32: 0.4225 S33: -0.0249 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 379:465) REMARK 3 ORIGIN FOR THE GROUP (A): 70.6531 25.2856 14.0246 REMARK 3 T TENSOR REMARK 3 T11: -0.0488 T22: 0.5393 REMARK 3 T33: 0.2986 T12: 0.0239 REMARK 3 T13: 0.0570 T23: 0.0861 REMARK 3 L TENSOR REMARK 3 L11: 4.1112 L22: 2.5252 REMARK 3 L33: 2.5132 L12: -0.7707 REMARK 3 L13: -1.2270 L23: 0.1207 REMARK 3 S TENSOR REMARK 3 S11: -0.0810 S12: -0.1182 S13: -0.4589 REMARK 3 S21: 0.3239 S22: 0.0089 S23: -0.6565 REMARK 3 S31: -0.0322 S32: 1.1247 S33: -0.0456 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 466:539) REMARK 3 ORIGIN FOR THE GROUP (A): 57.0858 38.5276 9.4092 REMARK 3 T TENSOR REMARK 3 T11: 0.0343 T22: 0.2095 REMARK 3 T33: 0.2298 T12: -0.0220 REMARK 3 T13: -0.0101 T23: 0.0963 REMARK 3 L TENSOR REMARK 3 L11: 3.6263 L22: 2.3719 REMARK 3 L33: 3.3936 L12: -0.6454 REMARK 3 L13: -0.2044 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: 0.6217 S13: 0.8237 REMARK 3 S21: -0.1527 S22: -0.1259 S23: -0.0511 REMARK 3 S31: -0.5695 S32: 0.4490 S33: -0.1336 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 540:582) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5443 33.2167 15.0135 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 0.2406 REMARK 3 T33: 0.2338 T12: 0.0074 REMARK 3 T13: 0.0124 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 5.1705 L22: 5.7727 REMARK 3 L33: 1.1243 L12: 2.4476 REMARK 3 L13: -1.3114 L23: -0.8553 REMARK 3 S TENSOR REMARK 3 S11: -0.0909 S12: -0.2448 S13: 0.3360 REMARK 3 S21: -0.2490 S22: -0.1123 S23: -0.0555 REMARK 3 S31: -0.1676 S32: 0.1438 S33: 0.1234 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 583:612) REMARK 3 ORIGIN FOR THE GROUP (A): 59.0120 36.2353 13.5754 REMARK 3 T TENSOR REMARK 3 T11: 0.1175 T22: 0.2519 REMARK 3 T33: 0.2577 T12: -0.0240 REMARK 3 T13: -0.0112 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 3.7332 L22: 4.6846 REMARK 3 L33: 4.9428 L12: -0.0277 REMARK 3 L13: 0.1730 L23: -0.0349 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: 0.1255 S13: 0.5927 REMARK 3 S21: -0.2189 S22: -0.1418 S23: -0.2527 REMARK 3 S31: -0.3894 S32: 0.3460 S33: -0.3007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45817 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 3VE2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE PH 9.0, 20% PEG 6000, PH REMARK 280 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 66.46950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 66.46950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 66.46950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 66.46950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 66.46950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.46950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 66.46950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.46950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT (CHAINS A & B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 376 REMARK 465 LYS A 377 REMARK 465 LEU A 378 REMARK 465 THR A 379 REMARK 465 GLY A 417 REMARK 465 THR A 418 REMARK 465 THR A 562 REMARK 465 VAL A 613 REMARK 465 GLN A 614 REMARK 465 SER B 376 REMARK 465 LYS B 377 REMARK 465 LEU B 378 REMARK 465 GLY B 417 REMARK 465 THR B 418 REMARK 465 VAL B 613 REMARK 465 GLN B 614 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 455 -38.92 59.81 REMARK 500 ASN A 491 84.68 -166.16 REMARK 500 GLN A 559 46.43 -103.92 REMARK 500 ASP A 572 30.84 -156.78 REMARK 500 ASP A 597 6.56 59.73 REMARK 500 ASN A 598 -56.18 -122.47 REMARK 500 SER B 401 -57.47 70.89 REMARK 500 ASN B 429 -127.38 59.35 REMARK 500 LYS B 455 -100.78 67.48 REMARK 500 ASN B 491 74.32 -161.04 REMARK 500 ASN B 561 67.72 -119.94 REMARK 500 ARG B 564 10.66 -142.99 REMARK 500 ASP B 572 32.14 -151.40 REMARK 500 ASN B 598 -54.17 -132.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 702 DBREF 5KKX A 376 614 PDB 5KKX 5KKX 376 614 DBREF 5KKX B 376 614 PDB 5KKX 5KKX 376 614 SEQRES 1 A 239 SER LYS LEU THR THR VAL LEU ASP ALA VAL GLU LEU THR SEQRES 2 A 239 LEU ASN ASP LYS LYS ILE LYS ASN LEU ASP ASN PHE SER SEQRES 3 A 239 ASN ALA ALA GLN LEU VAL VAL ASP GLY ILE MET ILE ASP SEQRES 4 A 239 LEU ALA GLY THR GLU PHE THR ARG LYS PHE GLU HIS THR SEQRES 5 A 239 ILE ASN GLY LYS THR TYR GLU VAL GLU VAL CYS CYS SER SEQRES 6 A 239 ASN LEU ASN TYR LEU LYS TYR GLY MET LEU THR ARG LYS SEQRES 7 A 239 GLY LYS GLN VAL GLU GLN SER MET PHE LEU GLN GLY GLU SEQRES 8 A 239 ARG THR ASP GLU LYS GLU ILE PRO THR ASP GLN ASN VAL SEQRES 9 A 239 VAL TYR ARG GLY SER TRP TYR GLY HIS ILE ALA ASN GLY SEQRES 10 A 239 THR SER TRP SER GLY ASN ALA SER ASP LYS GLU GLY GLY SEQRES 11 A 239 ASN ARG ALA GLU PHE THR VAL ASN PHE ALA ASP LYS LYS SEQRES 12 A 239 ILE THR GLY LYS LEU THR ALA GLU ASN ARG GLN ALA GLN SEQRES 13 A 239 THR PHE THR ILE GLU GLY MET ILE GLN GLY ASN GLY PHE SEQRES 14 A 239 GLU GLY THR ALA LYS THR ALA GLU SER GLY PHE ASP LEU SEQRES 15 A 239 ASP GLN LYS ASN THR THR ARG THR PRO LYS ALA TYR ILE SEQRES 16 A 239 THR ASP ALA LYS VAL LYS GLY GLY PHE TYR GLY PRO LYS SEQRES 17 A 239 ALA GLU GLU LEU GLY GLY TRP PHE ALA TYR HIS LYS SER SEQRES 18 A 239 ASP ASN GLY SER ALA THR VAL VAL PHE GLY ALA LYS ARG SEQRES 19 A 239 GLN GLN PRO VAL GLN SEQRES 1 B 239 SER LYS LEU THR THR VAL LEU ASP ALA VAL GLU LEU THR SEQRES 2 B 239 LEU ASN ASP LYS LYS ILE LYS ASN LEU ASP ASN PHE SER SEQRES 3 B 239 ASN ALA ALA GLN LEU VAL VAL ASP GLY ILE MET ILE ASP SEQRES 4 B 239 LEU ALA GLY THR GLU PHE THR ARG LYS PHE GLU HIS THR SEQRES 5 B 239 ILE ASN GLY LYS THR TYR GLU VAL GLU VAL CYS CYS SER SEQRES 6 B 239 ASN LEU ASN TYR LEU LYS TYR GLY MET LEU THR ARG LYS SEQRES 7 B 239 GLY LYS GLN VAL GLU GLN SER MET PHE LEU GLN GLY GLU SEQRES 8 B 239 ARG THR ASP GLU LYS GLU ILE PRO THR ASP GLN ASN VAL SEQRES 9 B 239 VAL TYR ARG GLY SER TRP TYR GLY HIS ILE ALA ASN GLY SEQRES 10 B 239 THR SER TRP SER GLY ASN ALA SER ASP LYS GLU GLY GLY SEQRES 11 B 239 ASN ARG ALA GLU PHE THR VAL ASN PHE ALA ASP LYS LYS SEQRES 12 B 239 ILE THR GLY LYS LEU THR ALA GLU ASN ARG GLN ALA GLN SEQRES 13 B 239 THR PHE THR ILE GLU GLY MET ILE GLN GLY ASN GLY PHE SEQRES 14 B 239 GLU GLY THR ALA LYS THR ALA GLU SER GLY PHE ASP LEU SEQRES 15 B 239 ASP GLN LYS ASN THR THR ARG THR PRO LYS ALA TYR ILE SEQRES 16 B 239 THR ASP ALA LYS VAL LYS GLY GLY PHE TYR GLY PRO LYS SEQRES 17 B 239 ALA GLU GLU LEU GLY GLY TRP PHE ALA TYR HIS LYS SER SEQRES 18 B 239 ASP ASN GLY SER ALA THR VAL VAL PHE GLY ALA LYS ARG SEQRES 19 B 239 GLN GLN PRO VAL GLN HET GOL A 701 6 HET GOL A 702 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *192(H2 O) HELIX 1 AA1 ASP A 469 ILE A 473 5 5 HELIX 2 AA2 GLY A 581 ALA A 584 5 4 HELIX 3 AA3 ASP B 469 ILE B 473 5 5 HELIX 4 AA4 GLY B 581 ALA B 584 5 4 SHEET 1 AA1 6 LYS A 393 ASN A 396 0 SHEET 2 AA1 6 LEU A 382 THR A 388 -1 N GLU A 386 O LYS A 395 SHEET 3 AA1 6 GLU A 458 GLU A 466 -1 O MET A 461 N LEU A 387 SHEET 4 AA1 6 LEU A 445 LYS A 453 -1 N LYS A 446 O GLN A 464 SHEET 5 AA1 6 LYS A 431 CYS A 438 -1 N GLU A 434 O THR A 451 SHEET 6 AA1 6 THR A 421 ILE A 428 -1 N PHE A 424 O VAL A 435 SHEET 1 AA2 2 GLN A 405 VAL A 408 0 SHEET 2 AA2 2 ILE A 411 ASP A 414 -1 O ILE A 413 N LEU A 406 SHEET 1 AA310 SER A 494 GLY A 497 0 SHEET 2 AA310 VAL A 479 ALA A 490 -1 N ILE A 489 O TRP A 495 SHEET 3 AA310 GLY A 599 ARG A 609 -1 O LYS A 608 N ARG A 482 SHEET 4 AA310 GLU A 586 LYS A 595 -1 N TYR A 593 O ALA A 601 SHEET 5 AA310 ALA A 573 TYR A 580 -1 N TYR A 580 O GLU A 586 SHEET 6 AA310 GLY A 543 LYS A 549 -1 N GLY A 546 O VAL A 575 SHEET 7 AA310 PHE A 533 GLN A 540 -1 N THR A 534 O LYS A 549 SHEET 8 AA310 LYS A 518 THR A 524 -1 N GLY A 521 O ILE A 535 SHEET 9 AA310 ARG A 507 ASN A 513 -1 N ARG A 507 O THR A 524 SHEET 10 AA310 VAL A 479 ALA A 490 -1 N VAL A 479 O VAL A 512 SHEET 1 AA4 2 PHE A 555 ASP A 556 0 SHEET 2 AA4 2 LYS A 567 ALA A 568 -1 O ALA A 568 N PHE A 555 SHEET 1 AA5 6 LYS B 393 ASN B 396 0 SHEET 2 AA5 6 LEU B 382 THR B 388 -1 N GLU B 386 O LYS B 395 SHEET 3 AA5 6 GLU B 458 GLU B 466 -1 O MET B 461 N LEU B 387 SHEET 4 AA5 6 LEU B 445 ARG B 452 -1 N ARG B 452 O GLU B 458 SHEET 5 AA5 6 LYS B 431 CYS B 438 -1 N CYS B 438 O TYR B 447 SHEET 6 AA5 6 THR B 421 ILE B 428 -1 N PHE B 424 O VAL B 435 SHEET 1 AA6 2 GLN B 405 VAL B 408 0 SHEET 2 AA6 2 ILE B 411 ASP B 414 -1 O ILE B 413 N LEU B 406 SHEET 1 AA710 SER B 494 GLY B 497 0 SHEET 2 AA710 VAL B 479 ALA B 490 -1 N ILE B 489 O TRP B 495 SHEET 3 AA710 GLY B 599 ARG B 609 -1 O LYS B 608 N ARG B 482 SHEET 4 AA710 GLU B 586 LYS B 595 -1 N TYR B 593 O ALA B 601 SHEET 5 AA710 ALA B 573 TYR B 580 -1 N TYR B 580 O GLU B 586 SHEET 6 AA710 GLY B 543 LYS B 549 -1 N PHE B 544 O GLY B 577 SHEET 7 AA710 PHE B 533 GLN B 540 -1 N MET B 538 O GLU B 545 SHEET 8 AA710 LYS B 518 THR B 524 -1 N GLY B 521 O ILE B 535 SHEET 9 AA710 ARG B 507 ASN B 513 -1 N THR B 511 O THR B 520 SHEET 10 AA710 VAL B 479 ALA B 490 -1 N VAL B 479 O VAL B 512 SHEET 1 AA8 2 PHE B 555 ASP B 556 0 SHEET 2 AA8 2 LYS B 567 ALA B 568 -1 O ALA B 568 N PHE B 555 SSBOND 1 CYS A 438 CYS A 439 1555 1555 2.03 SSBOND 2 CYS B 438 CYS B 439 1555 1555 2.02 CISPEP 1 THR A 380 VAL A 381 0 -2.88 CISPEP 2 CYS A 438 CYS A 439 0 11.51 CISPEP 3 CYS B 438 CYS B 439 0 3.13 SITE 1 AC1 7 GLY A 483 SER A 500 ASP A 501 ARG A 507 SITE 2 AC1 7 HOH A 815 HOH A 831 HOH A 865 SITE 1 AC2 7 ASP A 516 HOH A 823 PHE B 400 ASN B 491 SITE 2 AC2 7 PRO B 566 LYS B 567 HOH B 735 CRYST1 132.939 132.939 64.353 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007522 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007522 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015539 0.00000