HEADER TRANSFERASE 27-JUN-16 5KN7 TITLE LIPID A SECONDARY ACYLTRANSFERASE LPXM FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPID A BIOSYNTHESIS LAUROYL ACYLTRANSFERASE; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII NIPH 410; SOURCE 3 ORGANISM_TAXID: 1217634; SOURCE 4 GENE: F910_00940; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LPXM MSBB WAAN, ACYL TRANSFERASE, LAURYL TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.L.DOVALA,Q.HU,L.E.METZGER IV REVDAT 5 06-MAR-24 5KN7 1 JRNL REMARK LINK REVDAT 4 26-OCT-16 5KN7 1 JRNL REVDAT 3 19-OCT-16 5KN7 1 JRNL REVDAT 2 05-OCT-16 5KN7 1 JRNL REVDAT 1 28-SEP-16 5KN7 0 JRNL AUTH D.DOVALA,C.M.RATH,Q.HU,W.S.SAWYER,S.SHIA,R.A.ELLING, JRNL AUTH 2 M.S.KNAPP,L.E.METZGER JRNL TITL STRUCTURE-GUIDED ENZYMOLOGY OF THE LIPID A ACYLTRANSFERASE JRNL TITL 2 LPXM REVEALS A DUAL ACTIVITY MECHANISM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E6064 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27681620 JRNL DOI 10.1073/PNAS.1610746113 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.7135 - 3.8067 0.99 3705 155 0.1898 0.2286 REMARK 3 2 3.8067 - 3.0214 1.00 3587 151 0.1964 0.2540 REMARK 3 3 3.0214 - 2.6395 0.99 3539 150 0.2258 0.2986 REMARK 3 4 2.6395 - 2.3981 1.00 3527 148 0.2300 0.2798 REMARK 3 5 2.3981 - 2.2262 0.99 3517 146 0.2444 0.3293 REMARK 3 6 2.2262 - 2.0950 0.99 3475 146 0.2754 0.3274 REMARK 3 7 2.0950 - 1.9900 0.99 3492 147 0.3015 0.3862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2671 REMARK 3 ANGLE : 0.971 3627 REMARK 3 CHIRALITY : 0.054 412 REMARK 3 PLANARITY : 0.006 451 REMARK 3 DIHEDRAL : 14.239 1578 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KN7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26054 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 72.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: SMALL GUITAR-PICK SHAPED CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM NABR 2.2 M (NH4)2SO4, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.60500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.60500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.38500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.66500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.38500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.66500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.60500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.38500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.66500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.60500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.38500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.66500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -186.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 622 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 THR B 2 REMARK 465 ARG B 3 REMARK 465 PRO B 4 REMARK 465 ASP B 5 REMARK 465 SER B 6 REMARK 465 LYS B 7 REMARK 465 SER B 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 9 CG SD CE REMARK 470 GLN B 12 CG CD OE1 NE2 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 ARG B 19 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 30 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 73 NE CZ NH1 NH2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 ARG B 153 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 157 CG CD OE1 OE2 REMARK 470 LYS B 221 CE NZ REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 ASP B 291 CG OD1 OD2 REMARK 470 GLU B 300 OE1 OE2 REMARK 470 LYS B 303 CD CE NZ REMARK 470 ASP B 306 CG OD1 OD2 REMARK 470 GLU B 311 CG CD OE1 OE2 REMARK 470 GLU B 320 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 185 O HOH B 501 2.11 REMARK 500 OH TYR B 143 OD1 ASP B 152 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 320 C PRO B 321 N 0.213 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 122 85.58 -69.00 REMARK 500 ASN B 236 65.05 38.52 REMARK 500 ASP B 237 -148.84 -159.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 644 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH B 645 DISTANCE = 9.56 ANGSTROMS REMARK 525 HOH B 646 DISTANCE = 11.93 ANGSTROMS REMARK 525 HOH B 647 DISTANCE = 14.62 ANGSTROMS REMARK 525 HOH B 648 DISTANCE = 19.34 ANGSTROMS REMARK 525 HOH B 649 DISTANCE = 20.29 ANGSTROMS REMARK 525 HOH B 650 DISTANCE = 21.93 ANGSTROMS REMARK 525 HOH B 651 DISTANCE = 23.48 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 55 O REMARK 620 2 GLU B 108 OE2 105.3 REMARK 620 3 TYR B 271 OH 115.2 17.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 127 O REMARK 620 2 GLU B 127 OE1 109.9 REMARK 620 3 ASN B 130 OD1 71.2 89.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT B 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KNK RELATED DB: PDB DBREF 5KN7 B 2 327 UNP S3TFW2 S3TFW2_ACIBA 2 327 SEQADV 5KN7 MET B -5 UNP S3TFW2 INITIATING METHIONINE SEQADV 5KN7 HIS B -4 UNP S3TFW2 EXPRESSION TAG SEQADV 5KN7 HIS B -3 UNP S3TFW2 EXPRESSION TAG SEQADV 5KN7 HIS B -2 UNP S3TFW2 EXPRESSION TAG SEQADV 5KN7 HIS B -1 UNP S3TFW2 EXPRESSION TAG SEQADV 5KN7 HIS B 0 UNP S3TFW2 EXPRESSION TAG SEQADV 5KN7 HIS B 1 UNP S3TFW2 EXPRESSION TAG SEQRES 1 B 333 MET HIS HIS HIS HIS HIS HIS THR ARG PRO ASP SER LYS SEQRES 2 B 333 SER MET ASN TYR GLN LEU LEU LYS THR PHE SER ARG GLN SEQRES 3 B 333 PRO ILE GLN PHE GLY ARG PHE LEU ALA ARG LEU LEU ALA SEQRES 4 B 333 GLY LEU VAL ASN THR LEU LYS ILE THR ARG THR SER LYS SEQRES 5 B 333 SER ILE GLU LEU ASN LEU ARG ILE ALA LEU PRO TYR LEU SEQRES 6 B 333 THR PRO GLN GLN ARG ILE ALA ILE THR GLU LYS ALA VAL SEQRES 7 B 333 ARG ASN GLU LEU THR SER TYR PHE GLU PHE LEU SER ILE SEQRES 8 B 333 TRP GLY SER SER ASN SER LYS ASN ILE SER ARG ILE HIS SEQRES 9 B 333 ARG ILE GLU GLY GLU HIS PHE PHE HIS GLU ALA LEU ALA SEQRES 10 B 333 ALA LYS LYS GLY VAL VAL LEU ILE VAL PRO HIS PHE GLY SEQRES 11 B 333 THR TRP GLU VAL MET ASN ALA TRP CYS ALA GLN PHE THR SEQRES 12 B 333 SER MET THR ILE LEU TYR LYS PRO VAL LYS ASN ALA ASP SEQRES 13 B 333 ALA ASP ARG PHE VAL ARG GLU ALA ARG SER ARG GLU GLN SEQRES 14 B 333 ALA ASN LEU VAL PRO THR ASP GLU SER GLY VAL ARG GLN SEQRES 15 B 333 ILE PHE LYS ALA LEU LYS GLN GLY GLU THR THR VAL ILE SEQRES 16 B 333 LEU PRO ASP HIS THR PRO ASN VAL GLY GLY ASP MET VAL SEQRES 17 B 333 ASN TYR PHE GLY VAL PRO LEU ALA SER SER ASN LEU SER SEQRES 18 B 333 ALA LYS LEU ILE GLN LYS THR LYS ALA LYS ALA LEU PHE SEQRES 19 B 333 LEU TYR ALA ILE ARG ASN GLU ASN ASP GLY PHE THR MET SEQRES 20 B 333 HIS ILE GLU PRO MET ASP GLU LYS ILE TYR GLU GLY THR SEQRES 21 B 333 ALA ASP ASP GLY THR TYR VAL ILE HIS GLN ALA ILE GLU SEQRES 22 B 333 GLN LEU ILE TYR GLN TYR PRO GLU HIS TYR HIS TRP SER SEQRES 23 B 333 TYR LYS ARG PHE LYS ALA ASN PRO ALA LEU ASP ASN ILE SEQRES 24 B 333 TYR ASN ILE ASP PRO THR GLU ALA LEU LYS ILE VAL ASP SEQRES 25 B 333 ARG LEU LYS ALA GLU ALA LEU LYS THR SER THR GLN PRO SEQRES 26 B 333 GLU PRO ILE GLN THR SER VAL MET HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET NA B 404 1 HET NA B 405 1 HET NA B 406 1 HET GOL B 407 6 HET GOL B 408 6 HET GOL B 409 6 HET GOL B 410 6 HET GOL B 411 6 HET GOL B 412 6 HET GOL B 413 6 HET GOL B 414 6 HET LMT B 415 35 HET PO4 B 416 5 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 NA 3(NA 1+) FORMUL 8 GOL 8(C3 H8 O3) FORMUL 16 LMT C24 H46 O11 FORMUL 17 PO4 O4 P 3- FORMUL 18 HOH *151(H2 O) HELIX 1 AA1 MET B 9 SER B 18 1 10 HELIX 2 AA2 PRO B 21 LEU B 39 1 19 HELIX 3 AA3 LEU B 39 LEU B 56 1 18 HELIX 4 AA4 THR B 60 GLY B 87 1 28 HELIX 5 AA5 SER B 89 ARG B 96 1 8 HELIX 6 AA6 GLY B 102 LYS B 113 1 12 HELIX 7 AA7 THR B 125 GLU B 127 5 3 HELIX 8 AA8 VAL B 128 GLN B 135 1 8 HELIX 9 AA9 ASN B 148 GLU B 162 1 15 HELIX 10 AB1 ASP B 170 GLN B 183 1 14 HELIX 11 AB2 ASN B 213 LYS B 223 1 11 HELIX 12 AB3 ASP B 247 GLU B 252 5 6 HELIX 13 AB4 THR B 254 TYR B 273 1 20 HELIX 14 AB5 PRO B 274 TYR B 277 5 4 HELIX 15 AB6 LYS B 282 ALA B 286 5 5 HELIX 16 AB7 ASP B 297 GLN B 318 1 22 SHEET 1 AA1 7 ILE B 97 GLU B 101 0 SHEET 2 AA1 7 PHE B 239 PRO B 245 1 O MET B 241 N ARG B 99 SHEET 3 AA1 7 LYS B 225 ARG B 233 -1 N PHE B 228 O GLU B 244 SHEET 4 AA1 7 VAL B 116 ILE B 119 1 N ILE B 119 O LEU B 227 SHEET 5 AA1 7 THR B 186 ILE B 189 1 O THR B 187 N LEU B 118 SHEET 6 AA1 7 MET B 139 TYR B 143 1 N THR B 140 O THR B 186 SHEET 7 AA1 7 ASN B 165 PRO B 168 1 O ASN B 165 N MET B 139 SHEET 1 AA2 2 ASP B 200 TYR B 204 0 SHEET 2 AA2 2 VAL B 207 SER B 211 -1 O VAL B 207 N TYR B 204 LINK O ALA B 55 NA NA B 404 1555 1555 2.75 LINK OE2 GLU B 108 NA NA B 404 1555 8445 2.48 LINK O GLU B 127 NA NA B 406 1555 1555 2.60 LINK OE1 GLU B 127 NA NA B 406 1555 1555 2.59 LINK OD1 ASN B 130 NA NA B 406 1555 1555 2.55 LINK OG1 THR B 254 NA NA B 405 1555 1555 3.08 LINK OH TYR B 271 NA NA B 404 1555 1555 2.37 CISPEP 1 GLY B 198 GLY B 199 0 8.09 SITE 1 AC1 11 GLY B 102 GLU B 103 HIS B 104 ASN B 203 SITE 2 AC1 11 GLY B 206 TYR B 260 GLN B 264 HOH B 508 SITE 3 AC1 11 HOH B 520 HOH B 530 HOH B 591 SITE 1 AC2 6 LYS B 217 THR B 254 ALA B 255 HOH B 526 SITE 2 AC2 6 HOH B 539 HOH B 605 SITE 1 AC3 5 PRO B 21 ILE B 22 LYS B 92 ARG B 96 SITE 2 AC3 5 HOH B 529 SITE 1 AC4 5 ALA B 55 HIS B 104 GLU B 108 PHE B 205 SITE 2 AC4 5 TYR B 271 SITE 1 AC5 1 THR B 254 SITE 1 AC6 5 TRP B 86 GLU B 127 ASN B 130 ARG B 159 SITE 2 AC6 5 GLU B 162 SITE 1 AC7 3 GLU B 244 GLN B 272 HOH B 532 SITE 1 AC8 5 SER B 138 GLN B 176 LYS B 179 HOH B 513 SITE 2 AC8 5 HOH B 548 SITE 1 AC9 9 TRP B 126 GLU B 127 ASN B 130 ILE B 141 SITE 2 AC9 9 ARG B 159 VAL B 188 LEU B 190 LMT B 415 SITE 3 AC9 9 HOH B 544 SITE 1 AD1 2 SER B 89 LYS B 92 SITE 1 AD2 5 SER B 89 ASN B 90 SER B 91 ARG B 307 SITE 2 AD2 5 HOH B 592 SITE 1 AD3 6 THR B 315 GLU B 320 PRO B 321 ILE B 322 SITE 2 AD3 6 GLN B 323 THR B 324 SITE 1 AD4 6 ILE B 97 HIS B 98 ARG B 99 ILE B 100 SITE 2 AD4 6 LYS B 249 HOH B 601 SITE 1 AD5 4 LYS B 144 HIS B 193 TYR B 281 HOH B 541 SITE 1 AD6 6 LEU B 14 TYR B 79 GLU B 127 LYS B 144 SITE 2 AD6 6 ARG B 159 GOL B 409 SITE 1 AD7 5 LYS B 282 LYS B 285 TYR B 294 ASN B 295 SITE 2 AD7 5 HOH B 521 CRYST1 58.770 145.330 87.210 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017016 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011467 0.00000