HEADER RNA BINDING PROTEIN 28-JUN-16 5KNW TITLE SOLUTION NMR STRUCTURE OF HUMAN LARP7 XRRM2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LA-RELATED PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 445-561; COMPND 5 SYNONYM: LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 7,P-TEFB- COMPND 6 INTERACTION PROTEIN FOR 7SK STABILITY,PIP7S; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LARP7, HDCMA18P; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS XRRM, RRM, 7SK, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.D.EICHHORN,J.FEIGON REVDAT 5 14-JUN-23 5KNW 1 REMARK REVDAT 4 25-DEC-19 5KNW 1 REMARK REVDAT 3 20-SEP-17 5KNW 1 COMPND REVDAT 2 14-DEC-16 5KNW 1 JRNL REVDAT 1 12-OCT-16 5KNW 0 JRNL AUTH C.D.EICHHORN,R.CHUG,J.FEIGON JRNL TITL HLARP7 C-TERMINAL DOMAIN CONTAINS AN XRRM THAT BINDS THE 3' JRNL TITL 2 HAIRPIN OF 7SK RNA. JRNL REF NUCLEIC ACIDS RES. V. 44 9977 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27679474 JRNL DOI 10.1093/NAR/GKW833 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KNW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221671. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 760 MMHG REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 HLARP7 XRRM2, 0.8 MM [U-99% 15N] REMARK 210 HLARP7 XRRM2, 90% H2O/10% D2O; REMARK 210 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 HLARP7 XRRM2, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 2D 1H-15N HSQC; 3D REMARK 210 HNCA; 3D CBCA(CO)NH; 3D CCCONH; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HN(CA)CO; 3D 1H-15N NOESY; 2D 1H- REMARK 210 13C HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, NMRPIPE, SPARKY, TALOS, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 442 -161.11 -54.28 REMARK 500 1 SER A 444 53.82 -155.64 REMARK 500 1 ASN A 445 80.79 38.82 REMARK 500 1 THR A 447 -158.46 -116.61 REMARK 500 1 VAL A 452 99.07 -37.53 REMARK 500 1 VAL A 455 100.95 38.43 REMARK 500 1 SER A 461 -164.31 -124.78 REMARK 500 1 GLU A 463 -52.94 166.93 REMARK 500 1 PRO A 464 -33.39 -37.77 REMARK 500 1 LEU A 465 97.13 -37.46 REMARK 500 1 THR A 474 -82.36 -62.28 REMARK 500 1 SER A 479 119.70 -168.10 REMARK 500 1 LEU A 487 85.23 -65.41 REMARK 500 1 GLU A 488 128.57 -35.82 REMARK 500 1 LEU A 544 -33.57 -35.64 REMARK 500 1 PRO A 547 -161.37 -63.39 REMARK 500 1 ARG A 548 178.85 72.18 REMARK 500 1 LYS A 551 175.86 67.25 REMARK 500 1 LYS A 560 83.22 61.94 REMARK 500 2 HIS A 438 -70.29 -113.33 REMARK 500 2 HIS A 443 -52.86 79.02 REMARK 500 2 PRO A 449 178.54 -54.25 REMARK 500 2 VAL A 452 98.35 -48.82 REMARK 500 2 VAL A 455 95.31 36.04 REMARK 500 2 GLU A 463 -49.25 156.28 REMARK 500 2 LEU A 465 96.49 -37.86 REMARK 500 2 LEU A 482 -73.09 -78.95 REMARK 500 2 ASP A 485 75.36 -100.74 REMARK 500 2 LEU A 487 97.68 -60.20 REMARK 500 2 GLU A 488 113.74 -37.25 REMARK 500 2 ASN A 545 -77.38 -118.38 REMARK 500 2 GLN A 546 107.23 -35.26 REMARK 500 2 ARG A 548 158.00 60.35 REMARK 500 2 LYS A 550 107.93 55.41 REMARK 500 2 LYS A 551 -154.63 -165.24 REMARK 500 2 THR A 554 117.94 55.74 REMARK 500 2 GLU A 555 94.02 -67.57 REMARK 500 2 LYS A 556 -156.86 42.56 REMARK 500 3 HIS A 439 -43.85 -153.40 REMARK 500 3 HIS A 442 -83.89 -104.14 REMARK 500 3 HIS A 443 52.43 -157.91 REMARK 500 3 ALA A 446 78.38 164.86 REMARK 500 3 GLN A 450 118.74 57.45 REMARK 500 3 PHE A 451 49.93 -82.35 REMARK 500 3 VAL A 452 84.14 23.80 REMARK 500 3 VAL A 455 90.98 34.59 REMARK 500 3 SER A 461 -166.93 -117.80 REMARK 500 3 GLU A 463 -44.35 157.36 REMARK 500 3 LEU A 465 102.47 -37.77 REMARK 500 3 THR A 474 -77.45 -64.09 REMARK 500 REMARK 500 THIS ENTRY HAS 411 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30126 RELATED DB: BMRB DBREF 5KNW A 445 561 UNP Q4G0J3 LARP7_HUMAN 445 561 SEQADV 5KNW MET A 437 UNP Q4G0J3 INITIATING METHIONINE SEQADV 5KNW HIS A 438 UNP Q4G0J3 EXPRESSION TAG SEQADV 5KNW HIS A 439 UNP Q4G0J3 EXPRESSION TAG SEQADV 5KNW HIS A 440 UNP Q4G0J3 EXPRESSION TAG SEQADV 5KNW HIS A 441 UNP Q4G0J3 EXPRESSION TAG SEQADV 5KNW HIS A 442 UNP Q4G0J3 EXPRESSION TAG SEQADV 5KNW HIS A 443 UNP Q4G0J3 EXPRESSION TAG SEQADV 5KNW SER A 444 UNP Q4G0J3 EXPRESSION TAG SEQRES 1 A 125 MET HIS HIS HIS HIS HIS HIS SER ASN ALA THR GLY PRO SEQRES 2 A 125 GLN PHE VAL SER GLY VAL ILE VAL LYS ILE ILE SER THR SEQRES 3 A 125 GLU PRO LEU PRO GLY ARG LYS GLN VAL ARG ASP THR LEU SEQRES 4 A 125 ALA ALA ILE SER GLU VAL LEU TYR VAL ASP LEU LEU GLU SEQRES 5 A 125 GLY ASP THR GLU CYS HIS ALA ARG PHE LYS THR PRO GLU SEQRES 6 A 125 ASP ALA GLN ALA VAL ILE ASN ALA TYR THR GLU ILE ASN SEQRES 7 A 125 LYS LYS HIS CYS TRP LYS LEU GLU ILE LEU SER GLY ASP SEQRES 8 A 125 HIS GLU GLN ARG TYR TRP GLN LYS ILE LEU VAL ASP ARG SEQRES 9 A 125 GLN ALA LYS LEU ASN GLN PRO ARG GLU LYS LYS ARG GLY SEQRES 10 A 125 THR GLU LYS LEU ILE THR LYS ALA HELIX 1 AA1 GLY A 467 SER A 479 1 13 HELIX 2 AA2 THR A 499 TYR A 510 1 12 HELIX 3 AA3 THR A 511 LYS A 516 5 6 HELIX 4 AA4 SER A 525 LYS A 543 1 19 SHEET 1 AA1 4 TYR A 483 LEU A 486 0 SHEET 2 AA1 4 GLU A 492 ARG A 496 -1 O HIS A 494 N ASP A 485 SHEET 3 AA1 4 ILE A 456 ILE A 460 -1 N ILE A 459 O CYS A 493 SHEET 4 AA1 4 LYS A 520 ILE A 523 -1 O GLU A 522 N LYS A 458 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1