HEADER TRANSFERASE 29-JUN-16 5KO5 TITLE CRYSTAL STRUCTURE OF ISOFORM 2 OF PURINE NUCLEOSIDE PHOSPHORYLASE FROM TITLE 2 SCHISTOSOMA MANSONI IN COMPLEX WITH CYTOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INOSINE-GUANOSINE PHOSPHORYLASE; COMPND 5 EC: 2.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: LEMO21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPINC KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.TORINI,L.ROMANELLO,L.BIRD,R.OWENS,J.BRANDAO-NETO,H.M.PEREIRA REVDAT 6 27-SEP-23 5KO5 1 REMARK REVDAT 5 01-JAN-20 5KO5 1 REMARK REVDAT 4 17-APR-19 5KO5 1 REMARK REVDAT 3 26-SEP-18 5KO5 1 JRNL REVDAT 2 13-SEP-17 5KO5 1 REMARK REVDAT 1 09-AUG-17 5KO5 0 JRNL AUTH J.R.TORINI,L.ROMANELLO,F.A.H.BATISTA,V.H.B.SERRAO,M.FAHEEM, JRNL AUTH 2 A.E.ZERAIK,L.BIRD,J.NETTLESHIP,Y.REDDIVARI,R.OWENS, JRNL AUTH 3 R.DEMARCO,J.C.BORGES,J.BRANDAO-NETO,H.D.PEREIRA JRNL TITL THE MOLECULAR STRUCTURE OF SCHISTOSOMA MANSONI PNP ISOFORM 2 JRNL TITL 2 PROVIDES INSIGHTS INTO THE NUCLEOSIDE SELECTIVITY OF PNPS. JRNL REF PLOS ONE V. 13 03532 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 30192840 JRNL DOI 10.1371/JOURNAL.PONE.0203532 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 69526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 3378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6001 - 3.9224 1.00 2926 141 0.1531 0.1579 REMARK 3 2 3.9224 - 3.1135 1.00 2811 143 0.1491 0.1739 REMARK 3 3 3.1135 - 2.7200 1.00 2781 171 0.1569 0.1589 REMARK 3 4 2.7200 - 2.4713 1.00 2765 157 0.1610 0.1667 REMARK 3 5 2.4713 - 2.2942 1.00 2830 95 0.1603 0.1831 REMARK 3 6 2.2942 - 2.1589 1.00 2743 155 0.1620 0.1852 REMARK 3 7 2.1589 - 2.0508 1.00 2772 133 0.1569 0.1893 REMARK 3 8 2.0508 - 1.9615 1.00 2789 134 0.1581 0.2092 REMARK 3 9 1.9615 - 1.8860 1.00 2751 129 0.1700 0.1794 REMARK 3 10 1.8860 - 1.8209 1.00 2749 141 0.1737 0.1910 REMARK 3 11 1.8209 - 1.7640 1.00 2801 119 0.1733 0.1827 REMARK 3 12 1.7640 - 1.7135 1.00 2722 153 0.1752 0.1979 REMARK 3 13 1.7135 - 1.6684 1.00 2744 129 0.1830 0.2098 REMARK 3 14 1.6684 - 1.6277 1.00 2736 153 0.1879 0.2109 REMARK 3 15 1.6277 - 1.5907 1.00 2740 139 0.1995 0.2343 REMARK 3 16 1.5907 - 1.5569 1.00 2748 144 0.2112 0.2267 REMARK 3 17 1.5569 - 1.5257 1.00 2717 148 0.2213 0.2070 REMARK 3 18 1.5257 - 1.4969 1.00 2748 142 0.2430 0.2668 REMARK 3 19 1.4969 - 1.4702 1.00 2709 145 0.2658 0.2912 REMARK 3 20 1.4702 - 1.4453 0.99 2679 149 0.2915 0.3301 REMARK 3 21 1.4453 - 1.4219 1.00 2792 122 0.3188 0.3501 REMARK 3 22 1.4219 - 1.4001 0.99 2717 144 0.3205 0.3268 REMARK 3 23 1.4001 - 1.3795 0.99 2670 158 0.3465 0.3620 REMARK 3 24 1.3795 - 1.3600 0.98 2708 134 0.3777 0.3750 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2231 REMARK 3 ANGLE : 0.872 3025 REMARK 3 CHIRALITY : 0.082 353 REMARK 3 PLANARITY : 0.006 393 REMARK 3 DIHEDRAL : 18.175 832 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0004 101.7951 77.3673 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.2090 REMARK 3 T33: 0.2880 T12: -0.0334 REMARK 3 T13: 0.0021 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.6229 L22: 5.4956 REMARK 3 L33: 4.9204 L12: -3.6299 REMARK 3 L13: -0.6955 L23: 0.4069 REMARK 3 S TENSOR REMARK 3 S11: 0.0515 S12: -0.0885 S13: 0.4844 REMARK 3 S21: 0.0705 S22: 0.1010 S23: -0.8651 REMARK 3 S31: -0.3204 S32: 0.6078 S33: -0.1292 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5093 84.4295 68.9795 REMARK 3 T TENSOR REMARK 3 T11: 0.2521 T22: 0.3003 REMARK 3 T33: 0.3227 T12: 0.0641 REMARK 3 T13: 0.0777 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 3.4331 L22: 3.6972 REMARK 3 L33: 1.5387 L12: 1.5776 REMARK 3 L13: -0.0976 L23: -0.6565 REMARK 3 S TENSOR REMARK 3 S11: -0.0910 S12: 0.0095 S13: -0.1893 REMARK 3 S21: -0.2555 S22: 0.0748 S23: -0.8296 REMARK 3 S31: 0.2450 S32: 0.4845 S33: 0.0553 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2738 88.9494 77.4485 REMARK 3 T TENSOR REMARK 3 T11: 0.1710 T22: 0.2674 REMARK 3 T33: 0.3301 T12: 0.0492 REMARK 3 T13: 0.0161 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.2584 L22: 1.9685 REMARK 3 L33: 2.1665 L12: 0.1839 REMARK 3 L13: 0.1566 L23: 0.3717 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0391 S13: -0.1382 REMARK 3 S21: 0.0270 S22: 0.0454 S23: -0.4393 REMARK 3 S31: 0.2357 S32: 0.3536 S33: -0.0150 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3812 91.0795 79.7634 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.1582 REMARK 3 T33: 0.1803 T12: 0.0206 REMARK 3 T13: 0.0034 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.9852 L22: 3.1536 REMARK 3 L33: 3.0288 L12: 1.4239 REMARK 3 L13: -1.4361 L23: -1.9499 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: 0.0412 S13: -0.0693 REMARK 3 S21: 0.0288 S22: -0.0106 S23: -0.2558 REMARK 3 S31: 0.0057 S32: 0.0622 S33: 0.0493 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1414 85.8632 71.7393 REMARK 3 T TENSOR REMARK 3 T11: 0.1198 T22: 0.1367 REMARK 3 T33: 0.0793 T12: 0.0239 REMARK 3 T13: 0.0029 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.0704 L22: 1.6682 REMARK 3 L33: 0.7043 L12: -0.3989 REMARK 3 L13: -0.3080 L23: 0.2445 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: 0.1825 S13: -0.0154 REMARK 3 S21: -0.1797 S22: -0.0546 S23: -0.0333 REMARK 3 S31: 0.0609 S32: -0.0050 S33: 0.0015 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 170 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5529 78.8300 55.5365 REMARK 3 T TENSOR REMARK 3 T11: 0.3162 T22: 0.3611 REMARK 3 T33: 0.1046 T12: 0.0715 REMARK 3 T13: -0.0075 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.6488 L22: 7.5516 REMARK 3 L33: 6.8013 L12: 0.7677 REMARK 3 L13: -2.2433 L23: 3.1614 REMARK 3 S TENSOR REMARK 3 S11: 0.1945 S12: 0.6463 S13: 0.0214 REMARK 3 S21: -0.7711 S22: -0.2604 S23: 0.1381 REMARK 3 S31: -0.0477 S32: -0.3075 S33: 0.0020 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1744 72.5033 73.2397 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: 0.1476 REMARK 3 T33: 0.1332 T12: 0.0341 REMARK 3 T13: 0.0072 T23: -0.0398 REMARK 3 L TENSOR REMARK 3 L11: 1.1178 L22: 0.7829 REMARK 3 L33: 1.4730 L12: -0.0263 REMARK 3 L13: -0.6234 L23: 0.0294 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: 0.2381 S13: -0.1989 REMARK 3 S21: -0.1373 S22: -0.0619 S23: 0.0284 REMARK 3 S31: 0.1646 S32: -0.1036 S33: 0.0819 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7020 76.5908 74.1546 REMARK 3 T TENSOR REMARK 3 T11: 0.1395 T22: 0.1487 REMARK 3 T33: 0.1023 T12: 0.0312 REMARK 3 T13: 0.0074 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.1281 L22: 3.5025 REMARK 3 L33: 0.6619 L12: 0.4953 REMARK 3 L13: -0.4886 L23: -0.1584 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: 0.0985 S13: -0.0936 REMARK 3 S21: -0.0372 S22: 0.0160 S23: 0.0380 REMARK 3 S31: 0.1071 S32: -0.0158 S33: 0.0527 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7279 74.8500 65.9148 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.1907 REMARK 3 T33: 0.1971 T12: 0.0665 REMARK 3 T13: 0.0387 T23: -0.0705 REMARK 3 L TENSOR REMARK 3 L11: 2.7611 L22: 3.7529 REMARK 3 L33: 8.2769 L12: 1.3976 REMARK 3 L13: -2.3869 L23: -4.4824 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: 0.1280 S13: 0.0928 REMARK 3 S21: 0.0499 S22: 0.0280 S23: -0.2283 REMARK 3 S31: -0.2816 S32: 0.0622 S33: 0.0317 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5880 72.1490 79.1628 REMARK 3 T TENSOR REMARK 3 T11: 0.2318 T22: 0.1527 REMARK 3 T33: 0.1372 T12: 0.0448 REMARK 3 T13: 0.0417 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.9993 L22: 2.0038 REMARK 3 L33: 2.0164 L12: 2.0011 REMARK 3 L13: 1.9883 L23: 1.9910 REMARK 3 S TENSOR REMARK 3 S11: 0.0650 S12: -0.3725 S13: -0.1260 REMARK 3 S21: -2.3557 S22: 0.1847 S23: -1.3172 REMARK 3 S31: -0.5537 S32: 0.4326 S33: -0.3046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69723 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 49.567 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 1.04000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CXQ REMARK 200 REMARK 200 REMARK: CUBIC SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 8000, 20% V/V ETHYLENE REMARK 280 GLYCOL, 30MM MAGNESIUM CHLORIDE, 30MM CALCIUM CHLORIDE, 0.1 M REMARK 280 MES/IMIDAZOLE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.56700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.56700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.56700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.56700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.56700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.56700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 49.56700 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 49.56700 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 49.56700 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 49.56700 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 49.56700 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 49.56700 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 49.56700 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 49.56700 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 49.56700 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 49.56700 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 49.56700 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 49.56700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -99.13400 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 99.13400 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -99.13400 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 99.13400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 621 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 673 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 653 O HOH A 661 1.82 REMARK 500 O HOH A 583 O HOH A 691 1.83 REMARK 500 O HOH A 410 O HOH A 420 1.94 REMARK 500 O HOH A 614 O HOH A 699 1.96 REMARK 500 O HOH A 632 O HOH A 634 1.96 REMARK 500 O HOH A 420 O HOH A 442 1.99 REMARK 500 O HOH A 484 O HOH A 670 1.99 REMARK 500 O HOH A 502 O HOH A 516 2.03 REMARK 500 O HOH A 670 O HOH A 686 2.07 REMARK 500 O HOH A 554 O HOH A 647 2.08 REMARK 500 O HOH A 479 O HOH A 732 2.12 REMARK 500 NH1 ARG A 124 O HOH A 401 2.13 REMARK 500 O HOH A 405 O HOH A 450 2.13 REMARK 500 O HOH A 462 O HOH A 689 2.14 REMARK 500 OD1 ASP A 184 O HOH A 402 2.17 REMARK 500 OE2 GLU A 267 O HOH A 403 2.17 REMARK 500 O HOH A 406 O HOH A 415 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 409 O HOH A 590 5465 1.99 REMARK 500 O HOH A 707 O HOH A 728 5465 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 66 -176.06 65.46 REMARK 500 THR A 223 -55.75 78.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 747 DISTANCE = 6.28 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CXQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ISOFORM 2 OF PURINE NUCLEOSIDE PHOSPHORYLASE REMARK 900 FROM SCHISTOSOMA MANSONI IN APO FORM REMARK 900 RELATED ID: 5CXS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ISOFORM 2 OF PURINE NUCLEOSIDE PHOSPHORYLASE REMARK 900 COMPLEXED WITH MES REMARK 900 RELATED ID: 5KO6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ISOFORM 2 OF PURINE NUCLEOSIDE PHOSPHORYLASE REMARK 900 COMPLEXED WITH CYTOSINE AND RIBOSE-1-PHOSPHATE DBREF1 5KO5 A 1 287 UNP A0A0U3AGT1_SCHMA DBREF2 5KO5 A A0A0U3AGT1 1 287 SEQRES 1 A 287 MET THR THR PRO VAL VAL ALA ASN TYR GLU ASN ALA SER SEQRES 2 A 287 MET ALA ALA ASP TYR ILE LYS ARG VAL SER ASN VAL LEU SEQRES 3 A 287 PRO ASP ILE GLY ILE ILE CYS GLY SER GLY LEU GLY LYS SEQRES 4 A 287 LEU ILE GLU GLU ILE GLU GLU ARG LYS VAL ILE PRO TYR SEQRES 5 A 287 ILE ASN ILE PRO ASN PHE PRO LYS THR THR VAL ALA GLY SEQRES 6 A 287 HIS VAL GLY ASN LEU VAL LEU GLY SER VAL GLY GLY ARG SEQRES 7 A 287 LYS ILE VAL ALA MET GLN GLY ARG LEU HIS MET TYR GLU SEQRES 8 A 287 GLY TYR SER ASN GLN GLU ILE ALA LEU PRO ILE ARG VAL SEQRES 9 A 287 MET LYS LEU LEU GLY VAL ARG VAL LEU LEU ILE THR ASN SEQRES 10 A 287 LEU ALA GLY GLY ILE ASN ARG LYS LEU LYS SER GLY ASP SEQRES 11 A 287 PHE VAL LEU ILE LYS GLY HIS ILE ASN PHE PRO GLY LEU SEQRES 12 A 287 GLY LEU ASN ASN VAL LEU VAL GLY PRO ASN GLN ASP GLU SEQRES 13 A 287 PHE GLY PRO ARG PHE PRO ASP LEU SER ASN ALA TYR ASP SEQRES 14 A 287 ARG LEU LEU GLN GLN LEU ALA LEU LYS ILE ALA GLN GLU SEQRES 15 A 287 ASN ASP PHE GLN ASP LEU VAL HIS GLU GLY VAL TYR ALA SEQRES 16 A 287 PHE ASN GLY GLY PRO THR TYR GLU SER PRO ASP GLU SER SEQRES 17 A 287 ASN MET LEU LEU LYS LEU GLY CYS ASP VAL VAL GLY MET SEQRES 18 A 287 SER THR VAL PRO GLU VAL ILE ILE ALA CYS HIS CYS GLY SEQRES 19 A 287 ILE LYS VAL LEU ALA VAL SER LEU ILE ALA ASN ASN SER SEQRES 20 A 287 ILE LEU ASP ALA GLU ASN ASP VAL SER ILE ASN HIS GLU SEQRES 21 A 287 LYS VAL LEU ALA VAL ALA GLU LYS ARG ALA ASP LEU LEU SEQRES 22 A 287 GLN MET TRP PHE LYS GLU ILE ILE THR ARG LEU PRO LEU SEQRES 23 A 287 ASP HET CYT A 301 8 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HETNAM CYT 6-AMINOPYRIMIDIN-2(1H)-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN CYT CYTOSINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CYT C4 H5 N3 O FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *347(H2 O) HELIX 1 AA1 ASN A 8 ASN A 24 1 17 HELIX 2 AA2 GLY A 38 GLU A 43 1 6 HELIX 3 AA3 ILE A 53 ILE A 55 5 3 HELIX 4 AA4 HIS A 88 GLY A 92 5 5 HELIX 5 AA5 SER A 94 GLY A 109 1 16 HELIX 6 AA6 PHE A 140 GLY A 144 1 5 HELIX 7 AA7 ASP A 169 ASN A 183 1 15 HELIX 8 AA8 PHE A 185 ASP A 187 5 3 HELIX 9 AA9 SER A 204 LEU A 214 1 11 HELIX 10 AB1 THR A 223 CYS A 233 1 11 HELIX 11 AB2 SER A 247 ASN A 253 1 7 HELIX 12 AB3 ASN A 258 LEU A 284 1 27 SHEET 1 AA110 GLU A 45 PRO A 51 0 SHEET 2 AA110 ASN A 69 VAL A 75 -1 O LEU A 70 N ILE A 50 SHEET 3 AA110 ARG A 78 GLN A 84 -1 O GLN A 84 N ASN A 69 SHEET 4 AA110 ILE A 29 ILE A 32 1 N ILE A 31 O MET A 83 SHEET 5 AA110 VAL A 112 GLY A 121 1 O LEU A 114 N GLY A 30 SHEET 6 AA110 LYS A 236 ASN A 246 1 O ASN A 245 N GLY A 121 SHEET 7 AA110 PHE A 131 ASN A 139 -1 N ILE A 134 O ALA A 239 SHEET 8 AA110 VAL A 189 PHE A 196 1 O HIS A 190 N LEU A 133 SHEET 9 AA110 VAL A 218 GLY A 220 1 O VAL A 218 N ALA A 195 SHEET 10 AA110 VAL A 112 GLY A 121 -1 N GLY A 120 O VAL A 219 CISPEP 1 GLY A 199 PRO A 200 0 10.92 SITE 1 AC1 11 LEU A 118 ALA A 119 GLY A 120 TYR A 202 SITE 2 AC1 11 GLU A 203 GLY A 220 MET A 221 ASN A 245 SITE 3 AC1 11 ILE A 257 HOH A 421 HOH A 490 SITE 1 AC2 10 GLY A 34 SER A 35 ARG A 86 HIS A 88 SITE 2 AC2 10 ASN A 117 LEU A 118 SER A 222 HOH A 421 SITE 3 AC2 10 HOH A 456 HOH A 475 SITE 1 AC3 7 ASP A 155 GLU A 156 PHE A 157 GLY A 158 SITE 2 AC3 7 HOH A 426 HOH A 454 HOH A 555 SITE 1 AC4 5 LYS A 106 GLU A 156 PHE A 157 HOH A 511 SITE 2 AC4 5 HOH A 555 CRYST1 99.134 99.134 99.134 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010087 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010087 0.00000