HEADER OXIDOREDUCTASE 01-JUL-16 5KOX TITLE STRUCTURE OF RIFAMPICIN MONOOXYGENASE COMPLEXED WITH RIFAMPICIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENTACHLOROPHENOL 4-MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.13.50; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOCARDIA FARCINICA; SOURCE 3 ORGANISM_TAXID: 37329; SOURCE 4 GENE: PCPB_1, ERS450000_00511; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOPROTEIN, MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.TANNER,L.-K.LIU REVDAT 5 04-OCT-23 5KOX 1 REMARK REVDAT 4 27-NOV-19 5KOX 1 REMARK REVDAT 3 20-SEP-17 5KOX 1 JRNL REMARK REVDAT 2 16-NOV-16 5KOX 1 JRNL REVDAT 1 07-SEP-16 5KOX 0 JRNL AUTH L.K.LIU,H.ABDELWAHAB,J.S.MARTIN DEL CAMPO,R.MEHRA-CHAUDHARY, JRNL AUTH 2 P.SOBRADO,J.J.TANNER JRNL TITL THE STRUCTURE OF THE ANTIBIOTIC DEACTIVATING, JRNL TITL 2 N-HYDROXYLATING RIFAMPICIN MONOOXYGENASE. JRNL REF J.BIOL.CHEM. V. 291 21553 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27557658 JRNL DOI 10.1074/JBC.M116.745315 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 97168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.820 REMARK 3 FREE R VALUE TEST SET COUNT : 3707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.8216 - 5.3311 1.00 3657 138 0.1536 0.1885 REMARK 3 2 5.3311 - 4.2319 1.00 3651 150 0.1438 0.1555 REMARK 3 3 4.2319 - 3.6971 1.00 3635 145 0.1589 0.1641 REMARK 3 4 3.6971 - 3.3591 1.00 3657 148 0.1765 0.2056 REMARK 3 5 3.3591 - 3.1183 1.00 3648 145 0.1956 0.2178 REMARK 3 6 3.1183 - 2.9345 1.00 3670 151 0.2045 0.2145 REMARK 3 7 2.9345 - 2.7875 1.00 3679 142 0.1979 0.2149 REMARK 3 8 2.7875 - 2.6662 1.00 3631 145 0.1923 0.2614 REMARK 3 9 2.6662 - 2.5636 1.00 3637 149 0.1965 0.2433 REMARK 3 10 2.5636 - 2.4751 1.00 3651 144 0.1870 0.2175 REMARK 3 11 2.4751 - 2.3977 1.00 3650 146 0.1862 0.2511 REMARK 3 12 2.3977 - 2.3292 1.00 3679 145 0.1807 0.2236 REMARK 3 13 2.3292 - 2.2679 1.00 3655 144 0.1800 0.2740 REMARK 3 14 2.2679 - 2.2125 1.00 3672 141 0.1803 0.2695 REMARK 3 15 2.2125 - 2.1622 1.00 3657 142 0.1781 0.1909 REMARK 3 16 2.1622 - 2.1162 1.00 3667 145 0.1801 0.2310 REMARK 3 17 2.1162 - 2.0739 1.00 3624 144 0.1842 0.2274 REMARK 3 18 2.0739 - 2.0347 1.00 3646 145 0.1865 0.2585 REMARK 3 19 2.0347 - 1.9984 1.00 3680 147 0.1840 0.2341 REMARK 3 20 1.9984 - 1.9645 1.00 3679 143 0.1874 0.2285 REMARK 3 21 1.9645 - 1.9328 1.00 3605 148 0.1875 0.2547 REMARK 3 22 1.9328 - 1.9031 1.00 3660 146 0.1868 0.2116 REMARK 3 23 1.9031 - 1.8751 0.97 3609 141 0.1829 0.2439 REMARK 3 24 1.8751 - 1.8487 0.92 3292 128 0.1898 0.2461 REMARK 3 25 1.8487 - 1.8237 0.85 3149 125 0.2036 0.2627 REMARK 3 26 1.8237 - 1.8000 0.82 3021 120 0.2201 0.2482 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3809 REMARK 3 ANGLE : 1.510 5197 REMARK 3 CHIRALITY : 0.087 579 REMARK 3 PLANARITY : 0.010 676 REMARK 3 DIHEDRAL : 17.100 2213 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9518 36.1431 -11.0128 REMARK 3 T TENSOR REMARK 3 T11: 0.1148 T22: 0.1050 REMARK 3 T33: 0.1303 T12: 0.0250 REMARK 3 T13: -0.0041 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.9181 L22: 1.1288 REMARK 3 L33: 0.5499 L12: -0.0248 REMARK 3 L13: 0.2346 L23: 0.3223 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: -0.0494 S13: 0.1567 REMARK 3 S21: -0.0317 S22: -0.0529 S23: 0.1409 REMARK 3 S31: -0.0589 S32: -0.0736 S33: 0.0565 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3903 35.2516 -34.5442 REMARK 3 T TENSOR REMARK 3 T11: 0.1909 T22: 0.1607 REMARK 3 T33: 0.1465 T12: 0.0447 REMARK 3 T13: 0.0246 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.3866 L22: 1.6790 REMARK 3 L33: 1.6399 L12: -0.7517 REMARK 3 L13: 0.0465 L23: -0.8200 REMARK 3 S TENSOR REMARK 3 S11: 0.1752 S12: 0.1699 S13: 0.1312 REMARK 3 S21: -0.2253 S22: -0.1031 S23: -0.0319 REMARK 3 S31: 0.0272 S32: 0.1199 S33: -0.0737 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2079 22.1454 -11.7386 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.0997 REMARK 3 T33: 0.0963 T12: 0.0267 REMARK 3 T13: -0.0044 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.7532 L22: 0.9517 REMARK 3 L33: 0.8925 L12: -0.3134 REMARK 3 L13: -0.4568 L23: 0.5631 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: -0.0787 S13: -0.0137 REMARK 3 S21: 0.0657 S22: -0.0026 S23: 0.0445 REMARK 3 S31: 0.0757 S32: 0.0076 S33: 0.0352 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 473 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4025 17.0162 -0.8865 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.1331 REMARK 3 T33: 0.2369 T12: 0.0218 REMARK 3 T13: 0.0533 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.0787 L22: 1.3141 REMARK 3 L33: 1.9715 L12: 0.4732 REMARK 3 L13: -0.3080 L23: 0.2460 REMARK 3 S TENSOR REMARK 3 S11: -0.0596 S12: -0.1239 S13: -0.2822 REMARK 3 S21: 0.1958 S22: -0.0238 S23: 0.2431 REMARK 3 S31: 0.2317 S32: -0.0397 S33: 0.0576 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KOX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 57.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 36.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4K2X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE RESERVOIR CONTAINED 17% (W/V) PEG REMARK 280 3350, 200 MM MAGNESIUM CHLORIDE, AND 2.5% GLYCEROL. THE PROTEIN REMARK 280 STOCK SOLUTION INCLUDED 5 MM RIFAMPICIN, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 191.56933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.78467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 143.67700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.89233 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 239.46167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 191.56933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 95.78467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.89233 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 143.67700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 239.46167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -47.89233 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 682 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 224 CG OD1 OD2 REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 80 -147.35 -147.60 REMARK 500 SER A 155 125.00 -39.85 REMARK 500 ARG A 201 40.70 -87.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 RFP A 502 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RFP A 502 DBREF1 5KOX A 1 473 UNP A0A0H5NE66_NOCFR DBREF2 5KOX A A0A0H5NE66 1 473 SEQADV 5KOX GLY A -2 UNP A0A0H5NE6 EXPRESSION TAG SEQADV 5KOX SER A -1 UNP A0A0H5NE6 EXPRESSION TAG SEQADV 5KOX HIS A 0 UNP A0A0H5NE6 EXPRESSION TAG SEQRES 1 A 476 GLY SER HIS MET ILE ASP VAL ILE ILE ALA GLY GLY GLY SEQRES 2 A 476 PRO THR GLY LEU MET LEU ALA GLY GLU LEU ARG LEU HIS SEQRES 3 A 476 GLY VAL ARG THR VAL VAL LEU GLU LYS GLU PRO THR PRO SEQRES 4 A 476 ASN GLN HIS SER ARG SER ARG GLY LEU HIS ALA ARG SER SEQRES 5 A 476 ILE GLU VAL MET ASP GLN ARG GLY LEU LEU GLU ARG PHE SEQRES 6 A 476 LEU ALA HIS GLY GLU GLN PHE ARG VAL GLY GLY PHE PHE SEQRES 7 A 476 ALA GLY LEU ALA ALA GLU TRP PRO ALA ASP LEU ASP THR SEQRES 8 A 476 ALA HIS SER TYR VAL LEU ALA ILE PRO GLN VAL VAL THR SEQRES 9 A 476 GLU ARG LEU LEU THR GLU HIS ALA THR GLU LEU GLY ALA SEQRES 10 A 476 GLU ILE ARG ARG GLY CYS GLU VAL ALA GLY LEU ASP GLN SEQRES 11 A 476 ASP ALA ASP GLY VAL THR ALA GLU LEU ALA ASP GLY THR SEQRES 12 A 476 ARG LEU ARG ALA ARG TYR LEU VAL GLY CYS ASP GLY GLY SEQRES 13 A 476 ARG SER THR VAL ARG ARG LEU LEU GLY VAL ASP PHE PRO SEQRES 14 A 476 GLY GLU PRO THR ARG VAL GLU THR LEU LEU ALA ASP VAL SEQRES 15 A 476 ARG ILE ASP VAL PRO VAL GLU THR LEU THR ALA VAL VAL SEQRES 16 A 476 ALA GLU VAL ARG LYS THR GLN LEU ARG PHE GLY ALA VAL SEQRES 17 A 476 PRO ALA GLY ASP GLY PHE PHE ARG LEU ILE VAL PRO ALA SEQRES 18 A 476 GLN GLY LEU SER ALA ASP ARG ALA ALA PRO THR LEU ASP SEQRES 19 A 476 GLU LEU LYS ARG CYS LEU HIS ALA THR ALA GLY THR ASP SEQRES 20 A 476 PHE GLY VAL HIS SER PRO ARG TRP LEU SER ARG PHE GLY SEQRES 21 A 476 ASP ALA THR ARG LEU ALA GLU ARG TYR ARG THR GLY ARG SEQRES 22 A 476 VAL LEU LEU ALA GLY ASP ALA ALA HIS ILE HIS PRO PRO SEQRES 23 A 476 THR GLY GLY GLN GLY LEU ASN LEU GLY ILE GLN ASP ALA SEQRES 24 A 476 PHE ASN LEU GLY TRP LYS LEU ALA ALA ALA ILE GLY GLY SEQRES 25 A 476 TRP ALA PRO PRO ASP LEU LEU ASP SER TYR HIS ASP GLU SEQRES 26 A 476 ARG HIS PRO VAL ALA ALA GLU VAL LEU ASP ASN THR ARG SEQRES 27 A 476 ALA GLN MET THR LEU LEU SER LEU ASP PRO GLY PRO ARG SEQRES 28 A 476 ALA VAL ARG ARG LEU MET ALA GLU LEU VAL GLU PHE PRO SEQRES 29 A 476 ASP VAL ASN ARG HIS LEU ILE GLU LYS ILE THR ALA ILE SEQRES 30 A 476 ALA VAL ARG TYR ASP LEU GLY ASP GLY HIS ASP LEU VAL SEQRES 31 A 476 GLY ARG ARG LEU ARG ASP ILE PRO LEU THR GLU GLY ARG SEQRES 32 A 476 LEU TYR GLU ARG MET ARG GLY GLY ARG GLY LEU LEU LEU SEQRES 33 A 476 ASP ARG THR GLY ARG LEU SER VAL SER GLY TRP SER ASP SEQRES 34 A 476 ARG VAL ASP HIS LEU ALA ASP PRO GLY ALA ALA LEU ASP SEQRES 35 A 476 VAL PRO ALA ALA LEU LEU ARG PRO ASP GLY HIS VAL ALA SEQRES 36 A 476 TRP VAL GLY GLU ASP GLN ASP ASP LEU LEU ALA HIS LEU SEQRES 37 A 476 PRO ARG TRP PHE GLY ALA ALA THR HET FAD A 501 53 HET RFP A 502 52 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM RFP RIFAMPICIN FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 RFP C43 H58 N4 O12 FORMUL 4 HOH *162(H2 O) HELIX 1 AA1 GLY A 10 LEU A 22 1 13 HELIX 2 AA2 HIS A 46 ARG A 56 1 11 HELIX 3 AA3 LEU A 58 ALA A 64 1 7 HELIX 4 AA4 PRO A 97 LEU A 112 1 16 HELIX 5 AA5 SER A 155 GLY A 162 1 8 HELIX 6 AA6 PRO A 184 ARG A 196 1 13 HELIX 7 AA7 THR A 229 GLY A 242 1 14 HELIX 8 AA8 GLY A 275 ALA A 277 5 3 HELIX 9 AA9 GLN A 287 GLY A 308 1 22 HELIX 10 AB1 LEU A 316 LEU A 341 1 26 HELIX 11 AB2 ASP A 344 GLU A 359 1 16 HELIX 12 AB3 PHE A 360 THR A 372 1 13 HELIX 13 AB4 ARG A 400 MET A 405 5 6 HELIX 14 AB5 ASP A 457 GLY A 470 1 14 SHEET 1 AA1 6 GLU A 115 ARG A 118 0 SHEET 2 AA1 6 THR A 27 GLU A 31 1 N VAL A 29 O ARG A 117 SHEET 3 AA1 6 ILE A 2 ALA A 7 1 N ILE A 6 O LEU A 30 SHEET 4 AA1 6 ARG A 141 GLY A 149 1 O VAL A 148 N ALA A 7 SHEET 5 AA1 6 VAL A 132 LEU A 136 -1 N ALA A 134 O LEU A 142 SHEET 6 AA1 6 VAL A 122 GLN A 127 -1 N ASP A 126 O THR A 133 SHEET 1 AA2 6 GLU A 115 ARG A 118 0 SHEET 2 AA2 6 THR A 27 GLU A 31 1 N VAL A 29 O ARG A 117 SHEET 3 AA2 6 ILE A 2 ALA A 7 1 N ILE A 6 O LEU A 30 SHEET 4 AA2 6 ARG A 141 GLY A 149 1 O VAL A 148 N ALA A 7 SHEET 5 AA2 6 VAL A 271 LEU A 273 1 O LEU A 272 N GLY A 149 SHEET 6 AA2 6 ARG A 267 THR A 268 -1 N THR A 268 O VAL A 271 SHEET 1 AA3 3 GLY A 44 LEU A 45 0 SHEET 2 AA3 3 VAL A 93 ALA A 95 -1 O LEU A 94 N LEU A 45 SHEET 3 AA3 3 GLU A 67 PHE A 69 -1 N GLU A 67 O ALA A 95 SHEET 1 AA4 3 GLY A 167 GLU A 168 0 SHEET 2 AA4 3 THR A 260 LEU A 262 -1 O THR A 260 N GLU A 168 SHEET 3 AA4 3 HIS A 279 ILE A 280 -1 O ILE A 280 N ARG A 261 SHEET 1 AA5 4 GLY A 203 PRO A 206 0 SHEET 2 AA5 4 PHE A 212 PRO A 217 -1 O ARG A 213 N VAL A 205 SHEET 3 AA5 4 GLU A 173 ARG A 180 -1 N LEU A 175 O VAL A 216 SHEET 4 AA5 4 HIS A 248 GLY A 257 -1 O SER A 254 N LEU A 176 SHEET 1 AA6 4 VAL A 428 ALA A 432 0 SHEET 2 AA6 4 GLY A 410 ASP A 414 1 N LEU A 412 O LEU A 431 SHEET 3 AA6 4 ALA A 442 LEU A 445 -1 O LEU A 445 N LEU A 411 SHEET 4 AA6 4 VAL A 451 VAL A 454 -1 O TRP A 453 N LEU A 444 SITE 1 AC1 36 GLY A 8 GLY A 10 PRO A 11 THR A 12 SITE 2 AC1 36 LEU A 30 GLU A 31 LYS A 32 ARG A 41 SITE 3 AC1 36 SER A 42 ARG A 43 GLY A 44 GLN A 98 SITE 4 AC1 36 CYS A 120 GLU A 121 VAL A 122 CYS A 150 SITE 5 AC1 36 ASP A 151 GLY A 152 THR A 156 LEU A 176 SITE 6 AC1 36 GLY A 275 ASP A 276 PRO A 283 GLY A 286 SITE 7 AC1 36 GLN A 287 GLY A 288 LEU A 289 ASN A 290 SITE 8 AC1 36 RFP A 502 HOH A 609 HOH A 610 HOH A 629 SITE 9 AC1 36 HOH A 643 HOH A 662 HOH A 679 HOH A 735 SITE 1 AC2 16 ARG A 43 GLY A 44 PHE A 74 LEU A 200 SITE 2 AC2 16 GLY A 203 VAL A 205 ILE A 215 PHE A 256 SITE 3 AC2 16 PRO A 283 THR A 284 GLY A 285 GLY A 286 SITE 4 AC2 16 FAD A 501 HOH A 612 HOH A 640 HOH A 706 CRYST1 81.439 81.439 287.354 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012279 0.007089 0.000000 0.00000 SCALE2 0.000000 0.014179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003480 0.00000