HEADER APOPTOSIS 11-JUL-16 5KTG TITLE CRYSTAL STRUCTURE OF MOUSE BAK BH3-IN-GROOVE HOMODIMER (GFP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN, BCL-2 HOMOLOGOUS COMPND 3 ANTAGONIST/KILLER; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: GFP, GS LINKER, BAK (UNP RESIDUES 66-144); COMPND 6 SYNONYM: APOPTOSIS REGULATOR BAK; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: JELLYFISH, MOUSE; SOURCE 4 ORGANISM_TAXID: 6100, 10090; SOURCE 5 GENE: GFP, BAK1, BAK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BCL-2 FAMILY PROTEINS, MITOCHONDRIAL OUTER MEMBRANE PERMEABILIZATION, KEYWDS 2 APOPTOSIS REGULATORS, PORE-FORMING PROTEINS, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR T.MANDAL,J.-Y.CHOE,K.J.OH REVDAT 5 15-NOV-23 5KTG 1 REMARK REVDAT 4 04-OCT-23 5KTG 1 LINK REVDAT 3 25-DEC-19 5KTG 1 REMARK REVDAT 2 13-SEP-17 5KTG 1 REMARK REVDAT 1 17-AUG-16 5KTG 0 JRNL AUTH T.MANDAL,S.SHIN,S.ALUVILA,H.C.CHEN,C.GRIEVE,J.Y.CHOE, JRNL AUTH 2 E.H.CHENG,E.J.HUSTEDT,K.J.OH JRNL TITL ASSEMBLY OF BAK HOMODIMERS INTO HIGHER ORDER HOMOOLIGOMERS JRNL TITL 2 IN THE MITOCHONDRIAL APOPTOTIC PORE. JRNL REF SCI REP V. 6 30763 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27488021 JRNL DOI 10.1038/SREP30763 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 39972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5562 - 6.7476 1.00 2923 159 0.1641 0.2186 REMARK 3 2 6.7476 - 5.3578 1.00 2845 134 0.2224 0.2357 REMARK 3 3 5.3578 - 4.6811 1.00 2825 136 0.1939 0.2520 REMARK 3 4 4.6811 - 4.2534 1.00 2828 133 0.2048 0.2416 REMARK 3 5 4.2534 - 3.9487 1.00 2783 152 0.2365 0.2284 REMARK 3 6 3.9487 - 3.7159 1.00 2784 137 0.2669 0.2989 REMARK 3 7 3.7159 - 3.5299 1.00 2778 145 0.2963 0.2765 REMARK 3 8 3.5299 - 3.3763 1.00 2790 135 0.3070 0.3088 REMARK 3 9 3.3763 - 3.2463 1.00 2744 160 0.3329 0.3470 REMARK 3 10 3.2463 - 3.1343 1.00 2796 132 0.3496 0.3852 REMARK 3 11 3.1343 - 3.0363 0.99 2745 140 0.3634 0.3771 REMARK 3 12 3.0363 - 2.9496 0.95 2639 136 0.3771 0.4099 REMARK 3 13 2.9496 - 2.8719 0.88 2412 129 0.3872 0.4283 REMARK 3 14 2.8719 - 2.8019 0.77 2140 112 0.3927 0.3941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 5024 REMARK 3 ANGLE : 2.155 6784 REMARK 3 CHIRALITY : 0.091 728 REMARK 3 PLANARITY : 0.011 882 REMARK 3 DIHEDRAL : 19.144 1834 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 99.7068 -3.3914 -3.5146 REMARK 3 T TENSOR REMARK 3 T11: 0.5120 T22: 0.3686 REMARK 3 T33: 0.3724 T12: 0.1026 REMARK 3 T13: -0.1924 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: -0.1990 L22: 0.3930 REMARK 3 L33: -0.3109 L12: -0.1613 REMARK 3 L13: -0.3302 L23: -0.0127 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: -0.0509 S13: -0.0583 REMARK 3 S21: 0.2861 S22: 0.1302 S23: -0.3554 REMARK 3 S31: 0.1165 S32: -0.0988 S33: 0.0251 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KTG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40122 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15100 REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BDU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7-12% PEG3350, 20% MPD, 100 MM TRIS, REMARK 280 PH 7.0-8.5, 0.5% CHAPS, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.73133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.46267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.46267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.73133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -32.73133 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1143 CG CD NE CZ NH1 NH2 REMARK 470 ARG B1143 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 64 N1 CR2 A 66 1.75 REMARK 500 O LEU B 1116 OG SER B 1119 2.02 REMARK 500 O ASP B 133 NZ LYS B 140 2.03 REMARK 500 OD2 ASP B 1088 NH1 ARG B 1135 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 1099 O LYS B 214 3664 2.00 REMARK 500 OD1 ASN A 164 NH1 ARG A 215 2545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A1134 CB TYR A1134 CG 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A1066 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 CYS A1084 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 SER B1122 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 144 176.19 179.34 REMARK 500 PHE A 165 -177.57 -171.07 REMARK 500 THR A 230 -62.84 -125.85 REMARK 500 SER A 232 -86.53 -123.43 REMARK 500 GLN A1099 57.44 28.86 REMARK 500 ALA A1113 -75.45 -58.14 REMARK 500 ASP B 117 -55.59 -141.66 REMARK 500 ASP B 129 73.46 63.72 REMARK 500 TYR B 143 31.24 -93.49 REMARK 500 SER B 232 -72.84 -44.97 REMARK 500 ASP B1088 6.80 -58.64 REMARK 500 GLN B1099 64.90 25.06 REMARK 500 PHE B1109 -72.03 -55.78 REMARK 500 ALA B1113 -73.17 -55.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 232 ASN A 1066 141.47 REMARK 500 ASN A 1066 SER A 1067 -142.82 REMARK 500 LYS B 3 GLY B 4 -149.08 REMARK 500 THR B 230 GLY B 231 -129.33 REMARK 500 LEU B 1098 GLN B 1099 97.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 5KTG A 1 230 UNP P42212 GFP_AEQVI 1 230 DBREF 5KTG A 1066 1144 UNP O08734 BAK_MOUSE 66 144 DBREF 5KTG B 1 230 UNP P42212 GFP_AEQVI 1 230 DBREF 5KTG B 1066 1144 UNP O08734 BAK_MOUSE 66 144 SEQADV 5KTG CR2 A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 5KTG CR2 A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 5KTG CR2 A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 5KTG ALA A 72 UNP P42212 SER 72 CONFLICT SEQADV 5KTG ASN A 206 UNP P42212 ALA 206 CONFLICT SEQADV 5KTG GLY A 231 UNP P42212 LINKER SEQADV 5KTG SER A 232 UNP P42212 LINKER SEQADV 5KTG CYS A 1084 UNP O08734 ASN 84 CONFLICT SEQADV 5KTG CR2 B 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 5KTG CR2 B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 5KTG CR2 B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 5KTG ALA B 72 UNP P42212 SER 72 CONFLICT SEQADV 5KTG ASN B 206 UNP P42212 ALA 206 CONFLICT SEQADV 5KTG GLY B 231 UNP P42212 LINKER SEQADV 5KTG SER B 232 UNP P42212 LINKER SEQADV 5KTG CYS B 1084 UNP O08734 ASN 84 CONFLICT SEQRES 1 A 309 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 309 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 309 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 A 309 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 A 309 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE CR2 SEQRES 6 A 309 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS MET LYS GLN SEQRES 7 A 309 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 A 309 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 A 309 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 A 309 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 A 309 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 A 309 ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 A 309 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 A 309 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 A 309 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 A 309 ASN HIS TYR LEU SER THR GLN SER ASN LEU SER LYS ASP SEQRES 17 A 309 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 A 309 VAL THR ALA ALA GLY ILE THR GLY SER ASN SER ILE LEU SEQRES 19 A 309 GLY GLN VAL GLY ARG GLN LEU ALA LEU ILE GLY ASP ASP SEQRES 20 A 309 ILE CYS ARG ARG TYR ASP THR GLU PHE GLN ASN LEU LEU SEQRES 21 A 309 GLU GLN LEU GLN PRO THR ALA GLY ASN ALA TYR GLU LEU SEQRES 22 A 309 PHE THR LYS ILE ALA SER SER LEU PHE LYS SER GLY ILE SEQRES 23 A 309 SER TRP GLY ARG VAL VAL ALA LEU LEU GLY PHE GLY TYR SEQRES 24 A 309 ARG LEU ALA LEU TYR VAL TYR GLN ARG GLY SEQRES 1 B 309 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 B 309 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 B 309 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 B 309 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 B 309 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE CR2 SEQRES 6 B 309 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS MET LYS GLN SEQRES 7 B 309 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 B 309 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 B 309 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 B 309 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 B 309 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 B 309 ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 B 309 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 B 309 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 B 309 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 B 309 ASN HIS TYR LEU SER THR GLN SER ASN LEU SER LYS ASP SEQRES 17 B 309 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 B 309 VAL THR ALA ALA GLY ILE THR GLY SER ASN SER ILE LEU SEQRES 19 B 309 GLY GLN VAL GLY ARG GLN LEU ALA LEU ILE GLY ASP ASP SEQRES 20 B 309 ILE CYS ARG ARG TYR ASP THR GLU PHE GLN ASN LEU LEU SEQRES 21 B 309 GLU GLN LEU GLN PRO THR ALA GLY ASN ALA TYR GLU LEU SEQRES 22 B 309 PHE THR LYS ILE ALA SER SER LEU PHE LYS SER GLY ILE SEQRES 23 B 309 SER TRP GLY ARG VAL VAL ALA LEU LEU GLY PHE GLY TYR SEQRES 24 B 309 ARG LEU ALA LEU TYR VAL TYR GLN ARG GLY MODRES 5KTG CR2 A 66 GLY CHROMOPHORE MODRES 5KTG CR2 B 66 GLY CHROMOPHORE HET CR2 A 66 19 HET CR2 B 66 19 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) FORMUL 1 CR2 2(C13 H13 N3 O4) HELIX 1 AA1 LYS A 3 THR A 9 5 7 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 ALA A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 MET A 88 1 7 HELIX 6 AA6 LYS A 156 ASN A 159 5 4 HELIX 7 AA7 ASN A 1066 GLN A 1071 1 6 HELIX 8 AA8 GLN A 1071 GLN A 1099 1 29 HELIX 9 AA9 THR A 1101 LYS A 1118 1 18 HELIX 10 AB1 SER A 1122 ARG A 1143 1 22 HELIX 11 AB2 PRO B 56 VAL B 61 5 6 HELIX 12 AB3 VAL B 68 ALA B 72 5 5 HELIX 13 AB4 MET B 78 ASP B 82 5 5 HELIX 14 AB5 PHE B 83 MET B 88 1 6 HELIX 15 AB6 THR B 230 ASP B 1088 1 26 HELIX 16 AB7 PHE B 1091 GLU B 1096 1 6 HELIX 17 AB8 THR B 1101 LYS B 1118 1 18 HELIX 18 AB9 SER B 1122 ARG B 1143 1 22 SHEET 1 AA112 VAL A 11 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O HIS A 25 N VAL A 22 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 45 N GLU A 32 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 AA112 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 AA112 HIS A 148 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O ASN A 164 N TYR A 151 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N PHE A 99 O ASP A 180 SHEET 10 AA112 ASN A 105 GLU A 115 -1 O VAL A 112 N TYR A 92 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 11 VAL A 22 1 N GLU A 17 O ILE A 123 SHEET 1 AA212 VAL B 12 VAL B 22 0 SHEET 2 AA212 HIS B 25 ASP B 36 -1 O GLY B 33 N ILE B 14 SHEET 3 AA212 LYS B 41 ILE B 47 -1 O LYS B 45 N GLU B 32 SHEET 4 AA212 HIS B 217 ALA B 227 -1 O LEU B 220 N LEU B 44 SHEET 5 AA212 HIS B 199 SER B 208 -1 N SER B 208 O VAL B 219 SHEET 6 AA212 HIS B 148 ASP B 155 -1 N VAL B 150 O LEU B 201 SHEET 7 AA212 GLY B 160 ASN B 170 -1 O LYS B 162 N MET B 153 SHEET 8 AA212 VAL B 176 PRO B 187 -1 O GLN B 177 N HIS B 169 SHEET 9 AA212 TYR B 92 PHE B 100 -1 N PHE B 99 O ASP B 180 SHEET 10 AA212 ASN B 105 GLU B 115 -1 O VAL B 112 N TYR B 92 SHEET 11 AA212 THR B 118 ILE B 128 -1 O GLU B 124 N ARG B 109 SHEET 12 AA212 VAL B 12 VAL B 22 1 N ASP B 21 O GLY B 127 LINK C PHE A 64 N1 CR2 A 66 1555 1555 1.44 LINK C3 CR2 A 66 N VAL A 68 1555 1555 1.40 LINK O2 CR2 A 66 NE2 GLN A 69 1555 1555 1.37 LINK C PHE B 64 N1 CR2 B 66 1555 1555 1.43 LINK C3 CR2 B 66 N VAL B 68 1555 1555 1.42 LINK O2 CR2 B 66 NE2 GLN B 69 1555 1555 1.32 CISPEP 1 MET A 88 PRO A 89 0 -4.22 CISPEP 2 MET B 88 PRO B 89 0 -2.96 CRYST1 171.641 171.641 98.194 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005826 0.003364 0.000000 0.00000 SCALE2 0.000000 0.006727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010184 0.00000