HEADER OXIDOREDUCTASE 11-JUL-16 5KTK TITLE KETOREDUCTASE FROM MODULE 3 OF THE BACILLAENE SYNTHASE FROM BACILLUS TITLE 2 SUBTILIS 168 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE SYNTHASE PKSJ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: PKSJ, PKSK, BSU17180; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS BACILLAENE POLYKETIDE KETOREDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.T.WAGNER,D.C.GAY,A.T.KEATINGE-CLAY REVDAT 4 04-OCT-23 5KTK 1 REMARK REVDAT 3 25-DEC-19 5KTK 1 REMARK REVDAT 2 20-SEP-17 5KTK 1 REMARK REVDAT 1 07-SEP-16 5KTK 0 JRNL AUTH D.T.WAGNER,D.C.GAY,A.T.KEATINGE-CLAY JRNL TITL KETOREDUCTASE FROM MODULE 3 OF THE BACILLAENE SYNTHASE FROM JRNL TITL 2 BACILLUS SUBTILIS 168 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 34894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1819 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2277 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3560 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3686 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3468 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5001 ; 1.602 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7974 ; 3.699 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 6.137 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;35.931 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 625 ;13.112 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;12.925 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 556 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4135 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 857 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1805 ; 3.506 ; 2.194 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1804 ; 3.507 ; 2.193 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2251 ; 4.930 ; 3.269 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2252 ; 4.929 ; 3.270 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1881 ; 4.569 ; 2.733 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1882 ; 4.567 ; 2.733 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2751 ; 6.591 ; 3.887 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4095 ; 9.033 ;26.775 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4059 ; 9.036 ;26.504 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5KTK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37725 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 71.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4J1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9 MG/ML PKSKR3, 150 MM NACL, 10MM REMARK 280 HEPES, PH 7.5 WITH 1 UL CRYSTALLIZATION BUFFER (SODIUM CITRATE, REMARK 280 0.1 M HEPES PH7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.04900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.14900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.43450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.14900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.04900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.43450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 VAL A 9 REMARK 465 ASN A 10 REMARK 465 ALA A 11 REMARK 465 ILE A 12 REMARK 465 GLU A 13 REMARK 465 ILE A 69 REMARK 465 GLU A 70 REMARK 465 ASN A 71 REMARK 465 ASP A 72 REMARK 465 LYS A 207 REMARK 465 ALA A 208 REMARK 465 THR A 209 REMARK 465 GLU A 210 REMARK 465 ARG A 474 REMARK 465 ARG A 475 REMARK 465 LYS A 476 REMARK 465 PRO A 477 REMARK 465 HIS A 478 REMARK 465 GLU A 479 REMARK 465 GLY A 480 REMARK 465 GLY A 481 REMARK 465 LEU A 482 REMARK 465 GLN A 483 REMARK 465 GLU A 484 REMARK 465 ALA A 485 REMARK 465 ALA A 486 REMARK 465 LEU A 487 REMARK 465 GLN A 488 REMARK 465 SER A 489 REMARK 465 PRO A 490 REMARK 465 PRO A 491 REMARK 465 ALA A 492 REMARK 465 ARG A 493 REMARK 465 ASP A 494 REMARK 465 ILE A 495 REMARK 465 GLU A 496 REMARK 465 GLU A 497 REMARK 465 ALA A 498 REMARK 465 ASP A 499 REMARK 465 GLU A 500 REMARK 465 VAL A 501 REMARK 465 SER A 502 REMARK 465 LYS A 503 REMARK 465 CYS A 504 REMARK 465 ASP A 505 REMARK 465 GLY A 506 REMARK 465 LEU A 507 REMARK 465 LEU A 508 REMARK 465 SER A 509 REMARK 465 GLU A 510 REMARK 465 THR A 511 REMARK 465 GLN A 512 REMARK 465 SER A 513 REMARK 465 TRP A 514 REMARK 465 LEU A 515 REMARK 465 ILE A 516 REMARK 465 ASP A 517 REMARK 465 LEU A 518 REMARK 465 PHE A 519 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 462 O THR A 464 2.03 REMARK 500 OE1 GLN A 463 O HOH A 701 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD2 LEU A 271 NE2 GLN A 463 1455 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 140 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 140 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 THR A 464 CB - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 THR A 464 N - CA - C ANGL. DEV. = -34.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 -75.45 -70.47 REMARK 500 ASP A 75 44.89 -102.22 REMARK 500 ASP A 93 79.64 62.86 REMARK 500 LYS A 284 2.66 -68.88 REMARK 500 VAL A 348 -79.62 -115.91 REMARK 500 SER A 370 -159.23 -90.37 REMARK 500 GLN A 383 55.33 -150.72 REMARK 500 GLU A 421 -75.93 -108.23 REMARK 500 VAL A 422 48.25 30.44 REMARK 500 ASN A 465 44.82 78.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 855 DISTANCE = 6.86 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 601 DBREF 5KTK A 1 519 UNP P40806 PKSJ_BACSU 3954 4472 SEQRES 1 A 519 SER GLU ARG ASP LYS LYS GLU LEU VAL ASN ALA ILE GLU SEQRES 2 A 519 ASP ARG ALA ALA CYS PHE LEU THR LYS GLN TRP SER LEU SEQRES 3 A 519 SER PRO ILE GLY SER ALA VAL PRO GLY THR ARG THR VAL SEQRES 4 A 519 ALA ILE LEU CYS CYS GLN GLU THR ALA ASP LEU ALA ALA SEQRES 5 A 519 GLU VAL SER SER TYR PHE PRO ASN HIS LEU LEU ILE ASP SEQRES 6 A 519 VAL SER ARG ILE GLU ASN ASP GLN SER ASP ILE ASP TRP SEQRES 7 A 519 LYS GLU PHE ASP GLY LEU VAL ASP VAL ILE GLY CYS GLY SEQRES 8 A 519 TRP ASP ASP GLU GLY ARG LEU ASP TRP ILE GLU TRP VAL SEQRES 9 A 519 GLN ARG LEU VAL GLU PHE GLY HIS LYS GLU GLY LEU ARG SEQRES 10 A 519 LEU LEU CYS VAL THR LYS GLY LEU GLU SER PHE GLN ASN SEQRES 11 A 519 THR SER VAL ARG MET ALA GLY ALA SER ARG ALA GLY LEU SEQRES 12 A 519 TYR ARG MET LEU GLN CYS GLU TYR SER HIS LEU ILE SER SEQRES 13 A 519 ARG HIS MET ASP ALA GLU GLU VAL THR ASP HIS ARG ARG SEQRES 14 A 519 LEU ALA LYS LEU ILE ALA ASP GLU PHE TYR SER ASP SER SEQRES 15 A 519 TYR ASP ALA GLU VAL CYS TYR ARG ASP GLY LEU ARG TYR SEQRES 16 A 519 GLN ALA PHE LEU LYS ALA HIS PRO GLU THR GLY LYS ALA SEQRES 17 A 519 THR GLU GLN SER ALA VAL PHE PRO LYS ASP HIS VAL LEU SEQRES 18 A 519 LEU ILE THR GLY GLY THR ARG GLY ILE GLY LEU LEU CYS SEQRES 19 A 519 ALA ARG HIS PHE ALA GLU CYS TYR GLY VAL LYS LYS LEU SEQRES 20 A 519 VAL LEU THR GLY ARG GLU GLN LEU PRO PRO ARG GLU GLU SEQRES 21 A 519 TRP ALA ARG PHE LYS THR SER ASN THR SER LEU ALA GLU SEQRES 22 A 519 LYS ILE GLN ALA VAL ARG GLU LEU GLU ALA LYS GLY VAL SEQRES 23 A 519 GLN VAL GLU MET LEU SER LEU THR LEU SER ASP ASP ALA SEQRES 24 A 519 GLN VAL GLU GLN THR LEU GLN HIS ILE LYS ARG THR LEU SEQRES 25 A 519 GLY PRO ILE GLY GLY VAL ILE HIS CYS ALA GLY LEU THR SEQRES 26 A 519 ASP MET ASP THR LEU ALA PHE ILE ARG LYS THR SER ASP SEQRES 27 A 519 ASP ILE GLN ARG VAL LEU GLU PRO LYS VAL SER GLY LEU SEQRES 28 A 519 THR THR LEU TYR ARG HIS VAL CYS ASN GLU PRO LEU GLN SEQRES 29 A 519 PHE PHE VAL LEU PHE SER SER VAL SER ALA ILE ILE PRO SEQRES 30 A 519 GLU LEU SER ALA GLY GLN ALA ASP TYR ALA MET ALA ASN SEQRES 31 A 519 SER TYR MET ASP TYR PHE ALA GLU ALA HIS GLN LYS HIS SEQRES 32 A 519 ALA PRO ILE ILE SER VAL GLN TRP PRO ASN TRP LYS GLU SEQRES 33 A 519 THR GLY MET GLY GLU VAL THR ASN GLN ALA TYR ARG ASP SEQRES 34 A 519 SER GLY LEU LEU SER ILE THR ASN SER GLU GLY LEU ARG SEQRES 35 A 519 PHE LEU ASP GLN ILE VAL SER LYS LYS PHE GLY PRO VAL SEQRES 36 A 519 VAL LEU PRO ALA MET ALA ASN GLN THR ASN TRP GLU PRO SEQRES 37 A 519 GLU LEU LEU MET LYS ARG ARG LYS PRO HIS GLU GLY GLY SEQRES 38 A 519 LEU GLN GLU ALA ALA LEU GLN SER PRO PRO ALA ARG ASP SEQRES 39 A 519 ILE GLU GLU ALA ASP GLU VAL SER LYS CYS ASP GLY LEU SEQRES 40 A 519 LEU SER GLU THR GLN SER TRP LEU ILE ASP LEU PHE HET NDP A 601 48 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 HOH *155(H2 O) HELIX 1 AA1 CYS A 44 GLU A 46 5 3 HELIX 2 AA2 THR A 47 SER A 56 1 10 HELIX 3 AA3 ASP A 77 LYS A 79 5 3 HELIX 4 AA4 ILE A 88 GLY A 91 5 4 HELIX 5 AA5 ASP A 99 GLY A 111 1 13 HELIX 6 AA6 GLY A 137 TYR A 151 1 15 HELIX 7 AA7 ASP A 166 TYR A 179 1 14 HELIX 8 AA8 ARG A 228 TYR A 242 1 15 HELIX 9 AA9 PRO A 257 LYS A 265 5 9 HELIX 10 AB1 THR A 269 LYS A 284 1 16 HELIX 11 AB2 ASP A 297 LEU A 312 1 16 HELIX 12 AB3 ALA A 331 LYS A 335 5 5 HELIX 13 AB4 THR A 336 GLU A 345 1 10 HELIX 14 AB5 VAL A 348 CYS A 359 1 12 HELIX 15 AB6 SER A 373 ILE A 375 5 3 HELIX 16 AB7 ILE A 376 ALA A 381 1 6 HELIX 17 AB8 GLN A 383 GLN A 401 1 19 HELIX 18 AB9 ASN A 424 GLY A 431 1 8 HELIX 19 AC1 THR A 436 LYS A 450 1 15 HELIX 20 AC2 GLU A 467 LEU A 471 5 5 SHEET 1 AA115 HIS A 61 ASP A 65 0 SHEET 2 AA115 THR A 38 CYS A 43 1 N ILE A 41 O LEU A 62 SHEET 3 AA115 PHE A 81 ASP A 86 1 O VAL A 85 N ALA A 40 SHEET 4 AA115 LEU A 116 LYS A 123 1 O LEU A 119 N ASP A 86 SHEET 5 AA115 LEU A 154 ALA A 161 1 O MET A 159 N CYS A 120 SHEET 6 AA115 GLU A 186 ARG A 190 1 O VAL A 187 N HIS A 158 SHEET 7 AA115 LEU A 193 ALA A 201 -1 O TYR A 195 N CYS A 188 SHEET 8 AA115 ALA A 16 LEU A 26 -1 N GLN A 23 O PHE A 198 SHEET 9 AA115 VAL A 455 ALA A 461 -1 O LEU A 457 N LEU A 20 SHEET 10 AA115 ILE A 406 TRP A 411 1 N GLN A 410 O VAL A 456 SHEET 11 AA115 PHE A 366 SER A 371 1 N LEU A 368 O ILE A 407 SHEET 12 AA115 ILE A 315 HIS A 320 1 N HIS A 320 O VAL A 367 SHEET 13 AA115 VAL A 220 THR A 224 1 N LEU A 222 O GLY A 317 SHEET 14 AA115 LYS A 246 GLY A 251 1 O VAL A 248 N ILE A 223 SHEET 15 AA115 GLN A 287 SER A 292 1 O GLU A 289 N LEU A 249 SITE 1 AC1 30 GLY A 225 THR A 227 ARG A 228 GLY A 229 SITE 2 AC1 30 ILE A 230 GLY A 251 ARG A 252 GLU A 253 SITE 3 AC1 30 LYS A 274 CYS A 321 ALA A 322 GLY A 323 SITE 4 AC1 30 LEU A 324 GLU A 345 PRO A 346 LYS A 347 SITE 5 AC1 30 PHE A 369 SER A 370 TYR A 386 TRP A 411 SITE 6 AC1 30 PRO A 412 ASN A 413 TRP A 414 GLY A 418 SITE 7 AC1 30 MET A 419 HOH A 731 HOH A 743 HOH A 760 SITE 8 AC1 30 HOH A 761 HOH A 820 CRYST1 46.098 84.869 134.298 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021693 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011783 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007446 0.00000